Wall clock time and date at job start Tue Mar 31 2020 22:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29026 * 124.91765 * 2 1 4 4 C 1.31788 * 117.12731 * 180.22991 * 3 2 1 5 5 C 1.50700 * 122.74923 * 179.75057 * 4 3 2 6 6 C 1.50697 * 109.46617 * 269.70075 * 5 4 3 7 7 O 1.21283 * 120.00521 * 359.73030 * 6 5 4 8 8 N 1.34784 * 119.99774 * 180.02562 * 6 5 4 9 9 C 1.47155 * 120.97959 * 359.44589 * 8 6 5 10 10 C 1.53711 * 108.16066 * 129.43454 * 9 8 6 11 11 O 1.42957 * 109.14846 * 52.53443 * 10 9 8 12 12 C 1.42964 * 114.16916 * 297.28738 * 11 10 9 13 13 H 1.09005 * 109.51603 * 302.66187 * 12 11 10 14 14 C 1.52995 * 109.51559 * 182.50425 * 12 11 10 15 15 N 1.46505 * 109.46947 * 65.25536 * 14 12 11 16 16 C 1.36940 * 119.99913 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99835 * 359.97438 * 16 15 14 18 18 C 1.38806 * 119.99816 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00109 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 120.00135 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.47210 * 89.99898 * 20 18 16 22 22 H 1.48502 * 109.47042 * 210.00066 * 20 18 16 23 23 H 1.48496 * 109.46845 * 329.99877 * 20 18 16 24 24 C 1.47144 * 120.98313 * 179.72821 * 8 6 5 25 25 C 1.33635 * 114.49743 * 359.47509 * 4 3 2 26 26 C 1.50695 * 126.03802 * 180.27622 * 25 4 3 27 27 S 1.70977 * 124.91729 * 179.68717 * 2 1 3 28 28 H 1.09001 * 109.47241 * 180.28745 * 1 2 3 29 29 H 1.08997 * 109.47459 * 300.28263 * 1 2 3 30 30 H 1.09001 * 109.47478 * 60.28550 * 1 2 3 31 31 H 1.09001 * 109.46798 * 149.70966 * 5 4 3 32 32 H 1.08993 * 109.47546 * 29.70518 * 5 4 3 33 33 H 1.09001 * 109.67933 * 249.21236 * 9 8 6 34 34 H 1.09001 * 109.67870 * 9.76449 * 9 8 6 35 35 H 1.09004 * 109.65064 * 292.57197 * 10 9 8 36 36 H 1.08997 * 109.48489 * 172.39865 * 10 9 8 37 37 H 1.08993 * 109.47501 * 185.25600 * 14 12 11 38 38 H 1.09002 * 109.47092 * 305.26217 * 14 12 11 39 39 H 0.96994 * 119.99976 * 359.97438 * 15 14 12 40 40 H 0.97004 * 120.00273 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.68443 * 350.23792 * 24 8 6 42 42 H 1.09000 * 109.68322 * 110.78592 * 24 8 6 43 43 H 1.08994 * 109.47795 * 89.99912 * 26 25 4 44 44 H 1.09010 * 109.47264 * 210.00181 * 26 25 4 45 45 H 1.09005 * 109.47088 * 329.99377 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0047 5 6 4.5307 2.0246 -0.0108 6 6 4.8572 2.3986 -1.4337 7 8 4.3488 1.7914 -2.3523 8 7 5.7189 3.4040 -1.6854 9 6 6.3439 4.1586 -0.5875 10 6 7.8608 4.1939 -0.8331 11 8 8.1106 4.6746 -2.1561 12 6 7.5846 3.8403 -3.1911 13 1 7.9956 2.8355 -3.0930 14 6 7.9644 4.4181 -4.5559 15 7 9.4189 4.3618 -4.7223 16 6 9.9947 4.8271 -5.8743 17 1 9.3766 5.2352 -6.6603 18 6 11.3727 4.7733 -6.0322 19 7 11.9262 5.2200 -7.1396 20 14 12.4418 4.0668 -4.6729 21 1 12.6099 2.6065 -4.8838 22 1 13.7719 4.7266 -4.6958 23 1 11.7933 4.3057 -3.3585 24 6 6.0577 3.7833 -3.0661 25 6 3.9354 -0.4006 0.0022 26 6 5.3574 -0.8993 0.0050 27 16 2.4856 -1.4020 0.0077 28 1 -0.3634 -1.0276 0.0052 29 1 -0.3634 0.5182 0.8874 30 1 -0.3634 0.5094 -0.8925 31 1 5.4432 1.7250 0.5046 32 1 4.0905 2.8819 0.4984 33 1 5.9485 5.1742 -0.5686 34 1 6.1358 3.6654 0.3620 35 1 8.2728 3.1904 -0.7265 36 1 8.3310 4.8594 -0.1091 37 1 7.4859 3.8356 -5.3430 38 1 7.6316 5.4542 -4.6171 39 1 9.9740 3.9956 -4.0162 40 1 12.8892 5.1821 -7.2501 41 1 5.6602 3.0415 -3.7588 42 1 5.6341 4.7618 -3.2925 43 1 5.7002 -1.0141 1.0333 44 1 5.4057 -1.8623 -0.5037 45 1 5.9949 -0.1826 -0.5127 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484679991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:40 Heat of formation + Delta-G solvation = -44.213726 kcal Electronic energy + Delta-G solvation = -27137.902113 eV Core-core repulsion = 23281.827948 eV Total energy + Delta-G solvation = -3856.074166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.74460 -40.75753 -39.38551 -36.83374 -35.78837 -34.89550 -34.02054 -32.46131 -31.43395 -30.81682 -29.31238 -27.38089 -26.01042 -24.76530 -24.17381 -23.51952 -22.42760 -20.56014 -19.80076 -19.69476 -18.92227 -18.43836 -17.74035 -17.15058 -16.73633 -16.62522 -16.17624 -16.02907 -15.76573 -15.71904 -15.21073 -14.80306 -14.61458 -14.49730 -14.42041 -14.26852 -14.18592 -14.08773 -13.77058 -13.65861 -13.21370 -13.11051 -13.05051 -12.88092 -12.83098 -12.60735 -12.33779 -12.09495 -12.04691 -11.85060 -11.67636 -11.22668 -11.01883 -10.95997 -10.62512 -10.16773 -9.66352 -9.55508 -9.33146 -8.03577 -5.37738 -0.28733 0.36876 0.71025 1.37401 1.41279 1.47907 1.49644 1.51088 1.98218 2.48447 2.72022 3.09906 3.27972 3.37251 3.50560 3.77453 3.85882 3.90622 3.97911 4.04372 4.04606 4.09920 4.24741 4.31462 4.37846 4.41978 4.47251 4.56857 4.64045 4.64670 4.65502 4.74737 4.84970 4.87764 4.89532 4.93222 5.04422 5.06703 5.22185 5.27336 5.72474 6.17845 6.21494 6.24710 6.76463 7.01488 7.05557 7.80156 8.00965 9.17689 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021436 B = 0.002291 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.914529 B =12219.165716 C =12369.304152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.031 3.969 3 N -0.495 5.495 4 C 0.057 3.943 5 C -0.058 4.058 6 C 0.519 3.481 7 O -0.577 6.577 8 N -0.614 5.614 9 C 0.072 3.928 10 C 0.036 3.964 11 O -0.389 6.389 12 C 0.088 3.912 13 H 0.060 0.940 14 C 0.162 3.838 15 N -0.752 5.752 16 C -0.237 4.237 17 H 0.057 0.943 18 C -0.065 4.065 19 N -0.983 5.983 20 Si 0.958 3.042 21 H -0.277 1.277 22 H -0.293 1.293 23 H -0.252 1.252 24 C 0.094 3.906 25 C -0.222 4.222 26 C -0.076 4.076 27 S 0.139 5.861 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.143 0.857 32 H 0.129 0.871 33 H 0.090 0.910 34 H 0.132 0.868 35 H 0.061 0.939 36 H 0.131 0.869 37 H 0.046 0.954 38 H 0.033 0.967 39 H 0.368 0.632 40 H 0.259 0.741 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.254 -13.097 26.655 36.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.247 4.247 3 N -0.211 5.211 4 C -0.074 4.074 5 C -0.100 4.100 6 C 0.309 3.691 7 O -0.456 6.456 8 N -0.347 5.347 9 C -0.050 4.050 10 C -0.041 4.041 11 O -0.308 6.308 12 C 0.029 3.971 13 H 0.078 0.922 14 C 0.035 3.965 15 N -0.398 5.398 16 C -0.368 4.368 17 H 0.075 0.925 18 C -0.256 4.256 19 N -0.633 5.633 20 Si 0.785 3.215 21 H -0.203 1.203 22 H -0.220 1.220 23 H -0.176 1.176 24 C -0.029 4.029 25 C -0.343 4.343 26 C -0.135 4.135 27 S 0.395 5.605 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.160 0.840 32 H 0.146 0.854 33 H 0.108 0.892 34 H 0.150 0.850 35 H 0.079 0.921 36 H 0.149 0.851 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.201 0.799 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.121 0.879 44 H 0.095 0.905 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.952 -13.725 25.954 36.659 hybrid contribution 1.314 0.485 -0.189 1.414 sum -20.638 -13.240 25.764 35.567 Atomic orbital electron populations 1.20556 0.83094 1.05008 1.04806 1.27433 1.03044 0.90901 1.03306 1.65990 1.05015 1.33081 1.16982 1.19587 0.89962 0.93695 1.04167 1.20278 0.99225 0.97318 0.93152 1.20982 0.77566 0.78547 0.92027 1.90705 1.53109 1.53602 1.48218 1.48228 1.44819 1.34221 1.07467 1.22864 0.93269 0.98338 0.90523 1.23377 0.94947 1.01514 0.84286 1.88091 1.78162 1.49519 1.15062 1.22455 0.92455 0.93995 0.88196 0.92234 1.20732 0.83993 0.98800 0.92951 1.42544 1.03109 1.76147 1.18025 1.19040 0.91211 1.32395 0.94171 0.92472 1.25540 0.97945 1.02242 0.99904 1.69889 1.10680 1.54345 1.28415 0.85358 0.77962 0.78109 0.80107 1.20310 1.21962 1.17622 1.22026 0.94493 1.02123 0.84294 1.25989 1.01815 0.95755 1.10775 1.20346 0.87186 1.01772 1.04226 1.83696 0.96720 1.11705 1.68373 0.88157 0.88361 0.89625 0.83973 0.85354 0.89184 0.84981 0.92116 0.85128 0.93615 0.94907 0.79909 0.93247 0.89438 0.89957 0.87917 0.90541 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.47 71.23 0.75 -0.09 16 2 C 0.03 0.58 7.39 88.52 0.65 1.24 16 3 N -0.50 -11.73 10.53 -179.41 -1.89 -13.62 16 4 C 0.06 1.23 5.23 41.52 0.22 1.44 16 5 C -0.06 -0.94 4.01 29.10 0.12 -0.82 16 6 C 0.52 12.52 7.70 87.65 0.68 13.19 16 7 O -0.58 -19.57 15.50 -3.04 -0.05 -19.62 16 8 N -0.61 -13.34 3.01 -816.53 -2.46 -15.80 16 9 C 0.07 0.98 6.57 86.49 0.57 1.55 16 10 C 0.04 0.63 7.00 72.22 0.51 1.14 16 11 O -0.39 -11.56 10.33 -148.98 -1.54 -13.10 16 12 C 0.09 2.72 2.81 30.69 0.09 2.81 16 13 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 14 C 0.16 6.42 5.93 86.38 0.51 6.94 16 15 N -0.75 -36.81 5.36 -343.46 -1.84 -38.65 16 16 C -0.24 -14.03 10.47 84.03 0.88 -13.15 16 17 H 0.06 3.68 8.06 -2.91 -0.02 3.65 16 18 C -0.06 -3.93 5.50 84.86 0.47 -3.46 16 19 N -0.98 -64.22 13.97 21.65 0.30 -63.92 16 20 Si 0.96 46.43 27.74 68.60 1.90 48.33 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 22 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 23 H -0.25 -11.14 6.52 99.48 0.65 -10.49 16 24 C 0.09 2.56 5.92 86.36 0.51 3.07 16 25 C -0.22 -4.18 6.59 24.64 0.16 -4.01 16 26 C -0.08 -1.02 9.81 71.23 0.70 -0.32 16 27 S 0.14 2.29 23.17 -56.49 -1.31 0.98 16 28 H 0.10 0.64 8.12 -2.39 -0.02 0.62 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.14 1.27 6.89 -2.39 -0.02 1.25 16 32 H 0.13 1.62 8.00 -2.39 -0.02 1.61 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.13 0.75 6.05 -2.39 -0.01 0.74 16 35 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.37 17.27 5.53 -92.71 -0.51 16.76 16 40 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 41 H 0.09 2.65 7.08 -2.38 -0.02 2.63 16 42 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.07 1.06 7.43 -2.38 -0.02 1.04 16 Total: -1.00 -84.50 380.78 0.36 -84.14 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.44 Total: 21.75 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 6.80 Total: 9.52 kcal Atomic # 7 Polarization: -126.11 SS G_CDS: -5.89 Total: -132.00 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -1.59 Total: -32.72 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.90 Total: 48.33 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.31 Total: 0.98 kcal Total: -84.50 0.36 -84.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484679991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.931 kcal (2) G-P(sol) polarization free energy of solvation -84.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds