Wall clock time and date at job start Tue Mar 31 2020 22:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37477 * 123.34663 * 2 1 4 4 C 1.33820 * 115.09618 * 179.77198 * 3 2 1 5 5 S 1.70614 * 110.95643 * 0.48597 * 4 3 2 6 6 C 1.36645 * 123.35392 * 180.29945 * 2 1 3 7 7 C 1.46585 * 125.45675 * 359.97438 * 6 2 1 8 8 O 1.21701 * 120.00042 * 350.17514 * 7 6 2 9 9 N 1.34777 * 119.99922 * 170.17471 * 7 6 2 10 10 C 1.46499 * 119.99773 * 0.68590 * 9 7 6 11 11 C 1.46501 * 120.00096 * 180.68430 * 9 7 6 12 12 C 1.53000 * 109.47138 * 89.99824 * 11 9 7 13 13 H 1.08993 * 109.46680 * 65.00496 * 12 11 9 14 14 C 1.53001 * 109.46812 * 184.99838 * 12 11 9 15 15 N 1.46902 * 109.47295 * 305.00165 * 12 11 9 16 16 C 1.46901 * 110.99658 * 154.99820 * 15 12 11 17 17 C 1.50703 * 109.46396 * 179.97438 * 16 15 12 18 18 O 1.21293 * 120.00465 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99358 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99892 * 179.97438 * 19 17 16 21 21 H 1.08005 * 119.99658 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99951 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99592 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00269 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47190 * 89.99719 * 24 22 20 26 26 H 1.48505 * 109.47166 * 210.00272 * 24 22 20 27 27 H 1.48507 * 109.47013 * 329.99600 * 24 22 20 28 28 H 1.09007 * 109.46633 * 269.70380 * 1 2 3 29 29 H 1.08998 * 109.47279 * 29.70036 * 1 2 3 30 30 H 1.09000 * 109.47015 * 149.70657 * 1 2 3 31 31 H 1.08001 * 122.45002 * 0.02562 * 3 2 1 32 32 H 1.08002 * 124.52193 * 180.21943 * 4 3 2 33 33 H 1.08996 * 109.47671 * 83.48575 * 10 9 7 34 34 H 1.09006 * 109.46763 * 203.47971 * 10 9 7 35 35 H 1.09002 * 109.47349 * 323.47967 * 10 9 7 36 36 H 1.08998 * 109.47412 * 210.00229 * 11 9 7 37 37 H 1.09005 * 109.46796 * 330.00130 * 11 9 7 38 38 H 1.09006 * 109.46823 * 60.00650 * 14 12 11 39 39 H 1.09000 * 109.46937 * 180.02562 * 14 12 11 40 40 H 1.08994 * 109.47777 * 300.00216 * 14 12 11 41 41 H 1.00903 * 110.99624 * 31.04281 * 15 12 11 42 42 H 1.08997 * 109.47061 * 300.00001 * 16 15 12 43 43 H 1.08999 * 109.47018 * 60.00207 * 16 15 12 44 44 H 0.97006 * 120.00260 * 0.02562 * 19 17 16 45 45 H 0.97006 * 120.00154 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2627 1.1484 0.0000 4 6 3.5871 0.9564 0.0048 5 16 3.9624 -0.7079 -0.0038 6 6 2.2583 -1.1414 -0.0060 7 6 1.7285 -2.5081 -0.0126 8 8 0.5403 -2.7010 0.1668 9 7 2.5572 -3.5511 -0.2173 10 6 3.9898 -3.3199 -0.4182 11 6 2.0253 -4.9160 -0.2388 12 6 1.6234 -5.2842 -1.6684 13 1 2.5114 -5.3108 -2.2999 14 6 0.9540 -6.6600 -1.6716 15 7 0.6836 -4.2811 -2.1867 16 6 0.7262 -4.2286 -3.6541 17 6 -0.2491 -3.1913 -4.1480 18 8 -0.9139 -2.5579 -3.3555 19 7 -0.3819 -2.9669 -5.4703 20 6 -1.2696 -2.0237 -5.9197 21 1 -1.8621 -1.4602 -5.2141 22 6 -1.4069 -1.7927 -7.2830 23 7 -2.2574 -0.8882 -7.7137 24 14 -0.3826 -2.7677 -8.5034 25 1 -1.1147 -4.0002 -8.8908 26 1 -0.1316 -1.9407 -9.7111 27 1 0.9129 -3.1371 -7.8785 28 1 -0.3633 -0.0053 1.0277 29 1 -0.3634 0.8926 -0.5092 30 1 -0.3633 -0.8873 -0.5184 31 1 1.8200 2.1335 0.0004 32 1 4.3205 1.7492 0.0089 33 1 4.4816 -3.2234 0.5497 34 1 4.4206 -4.1604 -0.9624 35 1 4.1332 -2.4040 -0.9915 36 1 2.7890 -5.6092 0.1139 37 1 1.1522 -4.9760 0.4110 38 1 0.0660 -6.6334 -1.0400 39 1 0.6681 -6.9226 -2.6901 40 1 1.6513 -7.4043 -1.2870 41 1 0.8672 -3.3731 -1.7868 42 1 1.7328 -3.9654 -3.9792 43 1 0.4563 -5.2033 -4.0606 44 1 0.1500 -3.4732 -6.1041 45 1 -2.3531 -0.7266 -8.6654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485842344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:23 Heat of formation + Delta-G solvation = -16.607725 kcal Electronic energy + Delta-G solvation = -28117.375344 eV Core-core repulsion = 24262.498265 eV Total energy + Delta-G solvation = -3854.877080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.37439 -38.47034 -38.01395 -36.50495 -35.08703 -33.84596 -31.64848 -31.27767 -30.70537 -28.58898 -27.67071 -26.49100 -25.69329 -23.74779 -23.34696 -21.29891 -20.14872 -19.30455 -18.46509 -18.32025 -18.06644 -16.60939 -16.21646 -16.02891 -15.55985 -15.16279 -15.07671 -14.88228 -14.54796 -13.90201 -13.70740 -13.63517 -13.30162 -13.24041 -13.11597 -12.99677 -12.70957 -12.56467 -12.20106 -12.12658 -12.01501 -11.96668 -11.90991 -11.66697 -11.48155 -11.37629 -11.17603 -10.91567 -10.70164 -10.54896 -9.91228 -9.80326 -9.49518 -8.96297 -8.82424 -8.44254 -8.33609 -8.10634 -7.97587 -6.24471 -3.75039 0.48408 1.42843 1.82894 2.36509 2.75178 3.06022 3.10614 3.17932 3.18266 3.84152 4.14838 4.19102 4.44974 4.68156 4.79359 4.83395 4.88842 5.04746 5.19251 5.21433 5.23681 5.28395 5.30933 5.35134 5.40509 5.65260 5.67962 5.73820 5.77311 5.90240 5.91715 5.99884 6.00795 6.01804 6.11787 6.22267 6.37160 6.44422 6.71748 7.14054 7.29270 7.66252 7.79311 8.11322 8.22661 8.68235 9.02984 9.50218 9.92735 10.89019 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010424 B = 0.003875 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.414194 B = 7224.670710 C = 8637.044369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.005 4.005 3 C -0.147 4.147 4 C -0.251 4.251 5 S 0.198 5.802 6 C -0.281 4.281 7 C 0.582 3.418 8 O -0.489 6.489 9 N -0.623 5.623 10 C 0.062 3.938 11 C 0.116 3.884 12 C 0.065 3.935 13 H 0.040 0.960 14 C -0.138 4.138 15 N -0.658 5.658 16 C 0.047 3.953 17 C 0.451 3.549 18 O -0.554 6.554 19 N -0.595 5.595 20 C -0.301 4.301 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.884 5.884 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.271 1.271 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.142 0.858 32 H 0.163 0.837 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.355 0.645 42 H 0.037 0.963 43 H 0.085 0.915 44 H 0.369 0.631 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.787 -5.183 15.841 25.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.020 4.020 3 C -0.178 4.178 4 C -0.388 4.388 5 S 0.467 5.533 6 C -0.400 4.400 7 C 0.371 3.629 8 O -0.364 6.364 9 N -0.359 5.359 10 C -0.083 4.083 11 C -0.007 4.007 12 C -0.046 4.046 13 H 0.058 0.942 14 C -0.196 4.196 15 N -0.296 5.296 16 C -0.086 4.086 17 C 0.236 3.764 18 O -0.435 6.435 19 N -0.235 5.235 20 C -0.430 4.430 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.525 5.525 24 Si 0.705 3.295 25 H -0.196 1.196 26 H -0.203 1.203 27 H -0.196 1.196 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.159 0.841 32 H 0.180 0.820 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.180 0.820 42 H 0.055 0.945 43 H 0.104 0.896 44 H 0.201 0.799 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.432 -5.898 16.355 25.338 hybrid contribution 0.603 0.862 -1.548 1.872 sum 19.036 -5.036 14.807 24.637 Atomic orbital electron populations 1.20772 0.88138 1.04934 1.02756 1.19619 0.98206 0.90390 0.93759 1.19968 0.92660 0.99722 1.05424 1.25750 1.00697 1.04420 1.07929 1.83242 1.04626 0.96261 1.69211 1.24292 0.96837 0.97208 1.21667 1.17041 0.85926 0.82878 0.77038 1.90931 1.14071 1.84231 1.47199 1.47722 1.07907 1.06891 1.73345 1.22036 0.81267 1.02722 1.02302 1.21780 1.00373 0.80980 0.97531 1.21954 0.93637 0.94154 0.94870 0.94246 1.21744 1.00888 0.94286 1.02689 1.60202 1.52626 1.12359 1.04448 1.21772 0.97269 0.99830 0.89775 1.19747 0.87020 0.86779 0.82849 1.90591 1.47739 1.50891 1.54282 1.42211 1.38682 1.36974 1.05618 1.19437 1.16497 1.14144 0.92887 0.86306 1.25013 0.97287 0.97080 0.96838 1.69625 1.35203 1.32445 1.15191 0.86686 0.80332 0.80605 0.81831 1.19632 1.20271 1.19646 0.90694 0.91411 0.88180 0.84076 0.81955 0.91490 0.89353 0.90463 0.89742 0.88457 0.91497 0.92334 0.92833 0.82037 0.94489 0.89642 0.79856 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 9.44 36.01 0.34 -1.34 16 2 C 0.00 -0.07 5.90 -105.47 -0.62 -0.69 16 3 C -0.15 -1.77 9.97 -41.41 -0.41 -2.19 16 4 C -0.25 -2.56 10.92 29.18 0.32 -2.24 16 5 S 0.20 1.92 17.92 -107.50 -1.93 -0.01 16 6 C -0.28 -3.94 6.22 -36.79 -0.23 -4.16 16 7 C 0.58 8.91 5.94 -12.89 -0.08 8.83 16 8 O -0.49 -9.21 12.63 5.19 0.07 -9.14 16 9 N -0.62 -7.35 2.66 -183.16 -0.49 -7.83 16 10 C 0.06 0.50 8.92 59.85 0.53 1.03 16 11 C 0.12 1.27 5.17 -4.04 -0.02 1.25 16 12 C 0.07 0.82 2.95 -67.71 -0.20 0.62 16 13 H 0.04 0.45 7.80 -51.93 -0.40 0.05 16 14 C -0.14 -1.53 9.41 37.16 0.35 -1.18 16 15 N -0.66 -11.74 5.83 -107.99 -0.63 -12.36 16 16 C 0.05 0.86 5.97 -4.97 -0.03 0.83 16 17 C 0.45 11.00 7.82 -10.98 -0.09 10.91 16 18 O -0.55 -15.91 15.78 5.55 0.09 -15.82 16 19 N -0.59 -14.88 5.09 -10.96 -0.06 -14.94 16 20 C -0.30 -8.81 10.16 -14.93 -0.15 -8.96 16 21 H 0.12 3.97 7.39 -52.48 -0.39 3.58 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -26.44 13.96 55.50 0.77 -25.67 16 24 Si 0.88 19.93 27.74 -169.99 -4.71 15.21 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -5.62 6.52 56.52 0.37 -5.25 16 28 H 0.07 1.05 8.14 -51.92 -0.42 0.62 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.10 1.95 6.28 -51.93 -0.33 1.62 16 31 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.07 0.42 7.77 -51.93 -0.40 0.01 16 34 H 0.09 0.52 8.02 -51.93 -0.42 0.10 16 35 H 0.08 0.67 4.62 -23.39 -0.11 0.57 16 36 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 37 H 0.10 1.24 7.41 -51.93 -0.38 0.86 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.35 6.95 4.19 -39.29 -0.16 6.78 16 42 H 0.04 0.61 8.05 -51.93 -0.42 0.19 16 43 H 0.09 1.40 7.44 -51.93 -0.39 1.02 16 44 H 0.37 8.13 5.76 -40.82 -0.24 7.89 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 373.89 15.07 5.63 5.63 Total: -1.00 -36.38 373.89 -7.78 -44.16 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: -6.15 Total: 17.01 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -0.38 Total: 3.75 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -0.40 Total: -60.80 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: 0.15 Total: -24.96 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.71 Total: 15.21 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -1.93 Total: -0.01 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.38 -7.78 -44.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485842344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.554 kcal (2) G-P(sol) polarization free energy of solvation -36.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds