Wall clock time and date at job start Tue Mar 31 2020 22:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37477 * 123.34663 * 2 1 4 4 C 1.33820 * 115.09618 * 179.77198 * 3 2 1 5 5 S 1.70614 * 110.95643 * 0.48597 * 4 3 2 6 6 C 1.36645 * 123.35392 * 180.29945 * 2 1 3 7 7 C 1.46585 * 125.45675 * 359.97438 * 6 2 1 8 8 O 1.21701 * 120.00042 * 350.17514 * 7 6 2 9 9 N 1.34777 * 119.99922 * 170.17471 * 7 6 2 10 10 C 1.46499 * 119.99773 * 0.68590 * 9 7 6 11 11 C 1.46501 * 120.00096 * 180.68430 * 9 7 6 12 12 C 1.53000 * 109.47138 * 89.99824 * 11 9 7 13 13 H 1.08993 * 109.46680 * 65.00496 * 12 11 9 14 14 C 1.53001 * 109.46812 * 184.99838 * 12 11 9 15 15 N 1.46902 * 109.47295 * 305.00165 * 12 11 9 16 16 C 1.46901 * 110.99658 * 154.99820 * 15 12 11 17 17 C 1.50703 * 109.46396 * 179.97438 * 16 15 12 18 18 O 1.21293 * 120.00465 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99358 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99892 * 179.97438 * 19 17 16 21 21 H 1.08005 * 119.99658 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99951 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99592 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00269 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47190 * 89.99719 * 24 22 20 26 26 H 1.48505 * 109.47166 * 210.00272 * 24 22 20 27 27 H 1.48507 * 109.47013 * 329.99600 * 24 22 20 28 28 H 1.09007 * 109.46633 * 269.70380 * 1 2 3 29 29 H 1.08998 * 109.47279 * 29.70036 * 1 2 3 30 30 H 1.09000 * 109.47015 * 149.70657 * 1 2 3 31 31 H 1.08001 * 122.45002 * 0.02562 * 3 2 1 32 32 H 1.08002 * 124.52193 * 180.21943 * 4 3 2 33 33 H 1.08996 * 109.47671 * 83.48575 * 10 9 7 34 34 H 1.09006 * 109.46763 * 203.47971 * 10 9 7 35 35 H 1.09002 * 109.47349 * 323.47967 * 10 9 7 36 36 H 1.08998 * 109.47412 * 210.00229 * 11 9 7 37 37 H 1.09005 * 109.46796 * 330.00130 * 11 9 7 38 38 H 1.09006 * 109.46823 * 60.00650 * 14 12 11 39 39 H 1.09000 * 109.46937 * 180.02562 * 14 12 11 40 40 H 1.08994 * 109.47777 * 300.00216 * 14 12 11 41 41 H 1.00903 * 110.99624 * 31.04281 * 15 12 11 42 42 H 1.08997 * 109.47061 * 300.00001 * 16 15 12 43 43 H 1.08999 * 109.47018 * 60.00207 * 16 15 12 44 44 H 0.97006 * 120.00260 * 0.02562 * 19 17 16 45 45 H 0.97006 * 120.00154 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2627 1.1484 0.0000 4 6 3.5871 0.9564 0.0048 5 16 3.9624 -0.7079 -0.0038 6 6 2.2583 -1.1414 -0.0060 7 6 1.7285 -2.5081 -0.0126 8 8 0.5403 -2.7010 0.1668 9 7 2.5572 -3.5511 -0.2173 10 6 3.9898 -3.3199 -0.4182 11 6 2.0253 -4.9160 -0.2388 12 6 1.6234 -5.2842 -1.6684 13 1 2.5114 -5.3108 -2.2999 14 6 0.9540 -6.6600 -1.6716 15 7 0.6836 -4.2811 -2.1867 16 6 0.7262 -4.2286 -3.6541 17 6 -0.2491 -3.1913 -4.1480 18 8 -0.9139 -2.5579 -3.3555 19 7 -0.3819 -2.9669 -5.4703 20 6 -1.2696 -2.0237 -5.9197 21 1 -1.8621 -1.4602 -5.2141 22 6 -1.4069 -1.7927 -7.2830 23 7 -2.2574 -0.8882 -7.7137 24 14 -0.3826 -2.7677 -8.5034 25 1 -1.1147 -4.0002 -8.8908 26 1 -0.1316 -1.9407 -9.7111 27 1 0.9129 -3.1371 -7.8785 28 1 -0.3633 -0.0053 1.0277 29 1 -0.3634 0.8926 -0.5092 30 1 -0.3633 -0.8873 -0.5184 31 1 1.8200 2.1335 0.0004 32 1 4.3205 1.7492 0.0089 33 1 4.4816 -3.2234 0.5497 34 1 4.4206 -4.1604 -0.9624 35 1 4.1332 -2.4040 -0.9915 36 1 2.7890 -5.6092 0.1139 37 1 1.1522 -4.9760 0.4110 38 1 0.0660 -6.6334 -1.0400 39 1 0.6681 -6.9226 -2.6901 40 1 1.6513 -7.4043 -1.2870 41 1 0.8672 -3.3731 -1.7868 42 1 1.7328 -3.9654 -3.9792 43 1 0.4563 -5.2033 -4.0606 44 1 0.1500 -3.4732 -6.1041 45 1 -2.3531 -0.7266 -8.6654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485842344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:22 Heat of formation + Delta-G solvation = -45.254235 kcal Electronic energy + Delta-G solvation = -28118.617550 eV Core-core repulsion = 24262.498265 eV Total energy + Delta-G solvation = -3856.119285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.40909 -40.27319 -39.07845 -37.67133 -36.27296 -35.85744 -33.78016 -32.48808 -31.76407 -29.63998 -28.48474 -28.14124 -26.67102 -25.54865 -24.31229 -22.28898 -21.34277 -21.10314 -20.32159 -19.34573 -19.09212 -18.02306 -17.39425 -17.14884 -16.81889 -16.69392 -16.36688 -15.99495 -15.92810 -15.44912 -15.03613 -14.69602 -14.59899 -14.37673 -14.25961 -14.25812 -14.16951 -13.86177 -13.58679 -13.40417 -13.19635 -13.04738 -12.97925 -12.93888 -12.68221 -12.55771 -12.44176 -12.39784 -11.98850 -11.96180 -11.53670 -11.51085 -10.93425 -10.44864 -10.26614 -9.94668 -9.67991 -9.25946 -9.18090 -8.42797 -6.03902 -0.47293 0.53585 0.98446 1.27178 1.33854 1.39392 1.42454 1.87101 1.93003 2.14374 2.21417 2.73423 3.12604 3.39385 3.56891 3.90461 3.97071 4.04068 4.11388 4.22107 4.25359 4.32977 4.37406 4.39750 4.50074 4.53238 4.54923 4.60680 4.69283 4.75184 4.87508 4.96834 5.00110 5.06023 5.09523 5.33888 5.40068 5.47095 5.51715 5.55688 5.90033 6.12841 6.21661 6.45829 6.58670 6.86346 7.08528 7.37021 7.95342 8.75305 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010424 B = 0.003875 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.414194 B = 7224.670710 C = 8637.044369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.035 4.035 3 C -0.170 4.170 4 C -0.248 4.248 5 S 0.294 5.706 6 C -0.320 4.320 7 C 0.571 3.429 8 O -0.544 6.544 9 N -0.617 5.617 10 C 0.052 3.948 11 C 0.116 3.884 12 C 0.063 3.937 13 H 0.067 0.933 14 C -0.134 4.134 15 N -0.688 5.688 16 C 0.061 3.939 17 C 0.443 3.557 18 O -0.609 6.609 19 N -0.590 5.590 20 C -0.329 4.329 21 H 0.050 0.950 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.967 3.033 25 H -0.256 1.256 26 H -0.272 1.272 27 H -0.232 1.232 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.150 0.850 32 H 0.196 0.804 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.070 0.930 36 H 0.134 0.866 37 H 0.068 0.932 38 H 0.043 0.957 39 H 0.053 0.947 40 H 0.091 0.909 41 H 0.343 0.657 42 H 0.069 0.931 43 H 0.114 0.886 44 H 0.389 0.611 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.496 -7.844 14.883 29.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.051 4.051 3 C -0.200 4.200 4 C -0.385 4.385 5 S 0.564 5.436 6 C -0.440 4.440 7 C 0.361 3.639 8 O -0.423 6.423 9 N -0.351 5.351 10 C -0.092 4.092 11 C -0.006 4.006 12 C -0.047 4.047 13 H 0.085 0.915 14 C -0.192 4.192 15 N -0.327 5.327 16 C -0.072 4.072 17 C 0.231 3.769 18 O -0.493 6.493 19 N -0.232 5.232 20 C -0.459 4.459 21 H 0.069 0.931 22 C -0.213 4.213 23 N -0.575 5.575 24 Si 0.787 3.213 25 H -0.180 1.180 26 H -0.197 1.197 27 H -0.155 1.155 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.168 0.832 32 H 0.214 0.786 33 H 0.109 0.891 34 H 0.140 0.860 35 H 0.088 0.912 36 H 0.152 0.848 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.166 0.834 42 H 0.087 0.913 43 H 0.131 0.869 44 H 0.225 0.775 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 24.205 -8.603 15.404 29.953 hybrid contribution -1.174 1.726 -1.157 2.386 sum 23.032 -6.877 14.247 27.942 Atomic orbital electron populations 1.20562 0.90415 1.02466 1.02429 1.19684 0.97330 0.92168 0.95926 1.20002 0.93535 0.99295 1.07191 1.26279 1.00473 1.06384 1.05381 1.82731 0.99724 0.94657 1.66520 1.24521 1.00364 0.96579 1.22501 1.17416 0.85708 0.84159 0.76664 1.90895 1.16473 1.85148 1.49827 1.47816 1.09169 1.06330 1.71771 1.22378 0.78948 1.03778 1.04075 1.21901 1.01004 0.81469 0.96247 1.22169 0.93592 0.93127 0.95831 0.91547 1.21739 1.00911 0.94406 1.02145 1.60219 1.55601 1.12910 1.03931 1.21696 0.96491 0.98436 0.90538 1.21057 0.86891 0.86853 0.82101 1.90581 1.49992 1.53054 1.55687 1.42006 1.38322 1.36444 1.06453 1.18989 1.18180 1.15941 0.92748 0.93146 1.26135 0.98447 0.97989 0.98749 1.69813 1.37063 1.34333 1.16329 0.85342 0.79508 0.78694 0.77804 1.18028 1.19664 1.15550 0.90180 0.91405 0.92879 0.83236 0.78639 0.89090 0.85960 0.91220 0.84806 0.91309 0.93750 0.92817 0.89017 0.83419 0.91329 0.86860 0.77520 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.59 9.44 71.24 0.67 -2.91 16 2 C -0.04 -1.10 5.90 -20.42 -0.12 -1.22 16 3 C -0.17 -4.14 9.97 21.09 0.21 -3.93 16 4 C -0.25 -4.48 10.92 66.81 0.73 -3.75 16 5 S 0.29 4.88 17.92 -56.49 -1.01 3.87 16 6 C -0.32 -9.16 6.22 24.08 0.15 -9.01 16 7 C 0.57 18.12 5.94 86.42 0.51 18.64 16 8 O -0.54 -22.52 12.63 -4.35 -0.05 -22.58 16 9 N -0.62 -13.48 2.66 -851.60 -2.27 -15.74 16 10 C 0.05 0.61 8.92 127.77 1.14 1.75 16 11 C 0.12 2.28 5.17 86.38 0.45 2.73 16 12 C 0.06 1.42 2.95 44.92 0.13 1.55 16 13 H 0.07 1.18 7.80 -2.39 -0.02 1.16 16 14 C -0.13 -2.61 9.41 71.98 0.68 -1.93 16 15 N -0.69 -24.47 5.83 -495.58 -2.89 -27.36 16 16 C 0.06 2.15 5.97 85.56 0.51 2.66 16 17 C 0.44 22.28 7.82 87.66 0.69 22.96 16 18 O -0.61 -37.79 15.78 -3.07 -0.05 -37.84 16 19 N -0.59 -29.86 5.09 -306.97 -1.56 -31.43 16 20 C -0.33 -20.34 10.16 84.04 0.85 -19.49 16 21 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 22 C -0.01 -0.85 5.50 84.93 0.47 -0.38 16 23 N -0.93 -58.07 13.96 21.66 0.30 -57.77 16 24 Si 0.97 39.99 27.74 68.60 1.90 41.89 16 25 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 27 H -0.23 -8.10 6.52 99.48 0.65 -7.45 16 28 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.05 2.40 6.28 -2.39 -0.01 2.39 16 31 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 32 H 0.20 2.14 8.06 -2.91 -0.02 2.12 16 33 H 0.09 0.68 7.77 -2.39 -0.02 0.66 16 34 H 0.12 0.67 8.02 -2.38 -0.02 0.66 16 35 H 0.07 0.94 4.62 -20.53 -0.09 0.85 16 36 H 0.13 1.30 8.07 -2.39 -0.02 1.28 16 37 H 0.07 1.78 7.41 -2.38 -0.02 1.76 16 38 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.05 1.09 7.45 -2.39 -0.02 1.08 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.34 13.90 4.19 -89.69 -0.38 13.52 16 42 H 0.07 2.00 8.05 -2.39 -0.02 1.98 16 43 H 0.11 3.37 7.44 -2.39 -0.02 3.35 16 44 H 0.39 16.24 5.76 -92.70 -0.53 15.71 16 45 H 0.28 15.79 8.31 -92.70 -0.77 15.02 16 Total: -1.00 -92.47 373.89 1.42 -91.05 By element: Atomic # 1 Polarization: 48.27 SS G_CDS: -0.02 Total: 48.25 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 7.07 Total: 7.66 kcal Atomic # 7 Polarization: -125.88 SS G_CDS: -6.41 Total: -132.30 kcal Atomic # 8 Polarization: -60.31 SS G_CDS: -0.10 Total: -60.42 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 1.90 Total: 41.89 kcal Atomic # 16 Polarization: 4.88 SS G_CDS: -1.01 Total: 3.87 kcal Total: -92.47 1.42 -91.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485842344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.793 kcal (2) G-P(sol) polarization free energy of solvation -92.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds