Wall clock time and date at job start Tue Mar 31 2020 22:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34476 * 126.16368 * 2 1 4 4 C 1.30256 * 108.70226 * 180.17533 * 3 2 1 5 5 O 1.33970 * 108.75661 * 359.57317 * 4 3 2 6 6 C 1.34324 * 126.16544 * 179.70967 * 2 1 3 7 7 C 1.50700 * 126.44813 * 359.97438 * 6 2 1 8 8 N 1.46895 * 109.47196 * 89.99670 * 7 6 2 9 9 C 1.46905 * 110.99909 * 180.02562 * 8 7 6 10 10 H 1.08991 * 110.64281 * 328.14618 * 9 8 7 11 11 C 1.55159 * 110.71962 * 205.00434 * 9 8 7 12 12 C 1.54910 * 101.58113 * 206.13873 * 11 9 8 13 13 H 1.09003 * 110.36349 * 278.17200 * 12 11 9 14 14 C 1.52992 * 110.37031 * 155.84695 * 12 11 9 15 15 N 1.47426 * 104.83549 * 37.00693 * 12 11 9 16 16 C 1.34776 * 125.64937 * 155.91052 * 15 12 11 17 17 O 1.21270 * 120.00136 * 0.02562 * 16 15 12 18 18 C 1.50706 * 119.99556 * 180.02562 * 16 15 12 19 19 S 1.81004 * 109.46608 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99823 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00129 * 359.97438 * 20 19 18 22 22 C 1.38795 * 119.99853 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99862 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 120.00198 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47241 * 89.99950 * 24 22 20 26 26 H 1.48499 * 109.47440 * 210.00293 * 24 22 20 27 27 H 1.48506 * 109.47278 * 330.00123 * 24 22 20 28 28 C 1.47030 * 108.70144 * 335.87550 * 15 12 11 29 29 H 1.09007 * 109.46735 * 270.29643 * 1 2 3 30 30 H 1.09002 * 109.47358 * 30.28846 * 1 2 3 31 31 H 1.08997 * 109.47092 * 150.29921 * 1 2 3 32 32 H 1.08002 * 125.62520 * 179.84540 * 4 3 2 33 33 H 1.08999 * 109.47601 * 210.00197 * 7 6 2 34 34 H 1.09003 * 109.46799 * 330.00019 * 7 6 2 35 35 H 1.00893 * 111.00396 * 303.95811 * 8 7 6 36 36 H 1.09001 * 111.00313 * 324.20415 * 11 9 8 37 37 H 1.08996 * 111.00675 * 88.02662 * 11 9 8 38 38 H 1.09006 * 109.47251 * 59.99762 * 14 12 11 39 39 H 1.09003 * 109.47467 * 179.97438 * 14 12 11 40 40 H 1.09003 * 109.47457 * 299.99841 * 14 12 11 41 41 H 1.08992 * 109.47144 * 299.99482 * 18 16 15 42 42 H 1.08995 * 109.46888 * 60.00314 * 18 16 15 43 43 H 0.97005 * 120.00052 * 180.02562 * 23 22 20 44 44 H 1.09002 * 109.88036 * 241.64237 * 28 15 12 45 45 H 1.08993 * 109.88261 * 120.47858 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5431 0.6948 -0.0038 5 8 3.5734 -0.6445 0.0032 6 6 2.2997 -1.0844 0.0055 7 6 1.8494 -2.5225 0.0133 8 7 1.7025 -2.9972 -1.3690 9 6 1.2630 -4.3986 -1.4006 10 1 1.6550 -4.9436 -0.5420 11 6 1.6943 -5.0794 -2.7264 12 6 0.6258 -6.1923 -2.8664 13 1 0.8954 -7.0557 -2.2580 14 6 0.4708 -6.6003 -4.3328 15 7 -0.6211 -5.5833 -2.3687 16 6 -1.8697 -5.9682 -2.6992 17 8 -2.0362 -6.8908 -3.4685 18 6 -3.0590 -5.2520 -2.1126 19 16 -4.5831 -5.9968 -2.7438 20 6 -5.7766 -4.9952 -1.9209 21 1 -5.4543 -4.2041 -1.2601 22 6 -7.1309 -5.2238 -2.1210 23 7 -8.0225 -4.4759 -1.5058 24 14 -7.6884 -6.5927 -3.2632 25 1 -7.8441 -7.8505 -2.4893 26 1 -8.9893 -6.2254 -3.8780 27 1 -6.6749 -6.7904 -4.3304 28 6 -0.2768 -4.4869 -1.4515 29 1 -0.3633 0.0053 1.0277 30 1 -0.3634 0.8874 -0.5183 31 1 -0.3633 -0.8926 -0.5092 32 1 4.4066 1.3435 -0.0071 33 1 2.5902 -3.1325 0.5302 34 1 0.8916 -2.6005 0.5279 35 1 1.0689 -2.4081 -1.8882 36 1 1.6408 -4.3796 -3.5604 37 1 2.6938 -5.5053 -2.6399 38 1 1.4235 -6.9732 -4.7089 39 1 -0.2831 -7.3833 -4.4143 40 1 0.1618 -5.7355 -4.9199 41 1 -3.0356 -5.3384 -1.0264 42 1 -3.0246 -4.1997 -2.3943 43 1 -8.9690 -4.6359 -1.6453 44 1 -0.6691 -4.6988 -0.4569 45 1 -0.6899 -3.5492 -1.8232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486101258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:36 Heat of formation + Delta-G solvation = -6.120851 kcal Electronic energy + Delta-G solvation = -26751.767661 eV Core-core repulsion = 22897.345326 eV Total energy + Delta-G solvation = -3854.422335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.67113 -40.30736 -37.99903 -35.87181 -35.36720 -32.47861 -32.38865 -32.26779 -30.06780 -28.86504 -27.86504 -25.89592 -25.63787 -25.26212 -22.58316 -22.36725 -21.35944 -21.00155 -19.11672 -17.65944 -17.61651 -17.20274 -16.93389 -16.35590 -16.04168 -15.23488 -15.10135 -15.04592 -14.95078 -14.44426 -14.22745 -13.74914 -13.59743 -13.55052 -13.41673 -13.16243 -12.91755 -12.85299 -12.77706 -12.38973 -12.30031 -12.19703 -11.96700 -11.70219 -11.33260 -11.29321 -11.21194 -11.03373 -11.02184 -10.79849 -10.63205 -9.88002 -9.42724 -9.17186 -9.03240 -8.91869 -8.61436 -8.53479 -6.95467 -6.31905 -4.03936 1.05493 2.29936 2.39597 2.63368 2.90144 3.13181 3.30877 3.48117 3.53751 3.68111 3.81871 4.12506 4.23989 4.30834 4.40619 4.45070 4.58495 4.69969 4.74781 4.87483 4.93560 5.01594 5.07234 5.13405 5.20962 5.28530 5.30562 5.33899 5.38265 5.39052 5.59514 5.61853 5.64743 5.70790 5.73913 5.75475 5.94912 6.00422 6.07399 6.22111 6.39214 6.54114 6.73455 7.36932 7.53916 7.91067 8.37968 8.41445 9.14285 10.77309 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012122 B = 0.002670 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.267580 B =10483.713734 C =12535.483063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.004 4.004 3 N -0.486 5.486 4 C 0.172 3.828 5 O -0.196 6.196 6 C -0.043 4.043 7 C 0.141 3.859 8 N -0.672 5.672 9 C 0.077 3.923 10 H 0.099 0.901 11 C -0.115 4.115 12 C 0.135 3.865 13 H 0.074 0.926 14 C -0.162 4.162 15 N -0.619 5.619 16 C 0.549 3.451 17 O -0.511 6.511 18 C -0.119 4.119 19 S -0.141 6.141 20 C -0.521 4.521 21 H 0.087 0.913 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.074 3.926 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.249 0.751 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.350 0.650 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.055 0.945 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.271 0.729 44 H 0.071 0.929 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.808 5.760 3.499 26.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.125 4.125 3 N -0.216 5.216 4 C -0.054 4.054 5 O -0.082 6.082 6 C -0.097 4.097 7 C 0.012 3.988 8 N -0.304 5.304 9 C -0.033 4.033 10 H 0.117 0.883 11 C -0.154 4.154 12 C 0.031 3.969 13 H 0.092 0.908 14 C -0.220 4.220 15 N -0.357 5.357 16 C 0.337 3.663 17 O -0.386 6.386 18 C -0.269 4.269 19 S 0.086 5.914 20 C -0.669 4.669 21 H 0.105 0.895 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.052 4.052 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.265 0.735 33 H 0.113 0.887 34 H 0.090 0.910 35 H 0.170 0.830 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.074 0.926 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 25.792 4.855 2.309 26.347 hybrid contribution -0.867 0.406 0.939 1.341 sum 24.926 5.261 3.248 25.681 Atomic orbital electron populations 1.20178 0.86257 1.03656 1.03275 1.21619 0.98071 0.87626 1.05160 1.70379 1.01436 1.31759 1.17991 1.28035 0.97567 0.79383 1.00438 1.84440 1.30018 1.24467 1.69243 1.22934 0.80937 0.97249 1.08538 1.20322 1.00752 0.86604 0.91111 1.60607 1.55024 1.02618 1.12178 1.22675 0.91760 0.89017 0.99876 0.88333 1.22883 0.98451 0.96964 0.97063 1.21898 0.83119 0.95451 0.96392 0.90819 1.22124 1.02557 1.03380 0.93913 1.48456 1.05180 1.34911 1.47162 1.19944 0.82118 0.83416 0.80828 1.90656 1.84424 1.28901 1.34591 1.23269 0.96510 1.03206 1.03919 1.84794 0.96003 1.47893 1.62752 1.22292 0.92144 1.20334 1.32094 0.89453 1.24709 0.95468 0.95986 0.95129 1.69936 1.01658 1.38535 1.41534 0.86737 0.80022 0.82398 0.82717 1.19194 1.19915 1.15907 1.22801 0.96502 0.91360 0.94510 0.90376 0.90153 0.90864 0.73497 0.88674 0.91026 0.82988 0.89923 0.89554 0.92303 0.89471 0.92566 0.88794 0.88772 0.91909 0.91053 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.05 36.01 0.36 -0.24 16 2 C 0.00 -0.04 7.11 -82.82 -0.59 -0.63 16 3 N -0.49 -5.04 11.29 -11.18 -0.13 -5.16 16 4 C 0.17 1.30 13.23 52.09 0.69 1.99 16 5 O -0.20 -1.74 10.78 5.35 0.06 -1.69 16 6 C -0.04 -0.37 6.90 -35.69 -0.25 -0.62 16 7 C 0.14 0.91 5.71 -4.98 -0.03 0.88 16 8 N -0.67 -4.68 6.37 -106.06 -0.68 -5.35 16 9 C 0.08 0.54 3.28 -65.87 -0.22 0.33 16 10 H 0.10 0.59 7.82 -51.93 -0.41 0.19 16 11 C -0.11 -0.90 6.19 -24.58 -0.15 -1.05 16 12 C 0.13 1.44 3.77 -66.42 -0.25 1.19 16 13 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 14 C -0.16 -1.93 8.59 37.15 0.32 -1.61 16 15 N -0.62 -7.97 3.24 -163.04 -0.53 -8.50 16 16 C 0.55 9.66 7.65 -10.98 -0.08 9.57 16 17 O -0.51 -10.67 13.58 5.57 0.08 -10.60 16 18 C -0.12 -2.27 5.35 36.01 0.19 -2.08 16 19 S -0.14 -3.53 18.55 -107.50 -1.99 -5.52 16 20 C -0.52 -14.83 10.04 30.94 0.31 -14.51 16 21 H 0.09 2.59 8.03 -52.49 -0.42 2.16 16 22 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 23 N -0.88 -26.35 13.97 55.49 0.78 -25.57 16 24 Si 0.86 21.63 27.74 -169.99 -4.71 16.91 16 25 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 27 H -0.24 -5.93 6.74 56.52 0.38 -5.54 16 28 C 0.07 0.68 6.21 -3.06 -0.02 0.66 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.48 7.79 -51.93 -0.40 0.08 16 32 H 0.25 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.09 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.07 0.39 7.80 -51.93 -0.40 -0.02 16 35 H 0.35 2.52 8.03 -39.30 -0.32 2.20 16 36 H 0.08 0.71 8.06 -51.93 -0.42 0.29 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 1.31 6.10 -51.93 -0.32 1.00 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 42 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.62 7.49 -51.93 -0.39 0.23 16 LS Contribution 384.88 15.07 5.80 5.80 Total: -1.00 -35.49 384.88 -8.02 -43.51 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.88 Total: -0.40 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 0.19 Total: -3.43 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: -0.56 Total: -44.59 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.13 Total: -12.28 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.91 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.49 -8.02 -43.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486101258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.386 kcal (2) G-P(sol) polarization free energy of solvation -35.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds