Wall clock time and date at job start Tue Mar 31 2020 22:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34476 * 126.16368 * 2 1 4 4 C 1.30256 * 108.70226 * 180.17533 * 3 2 1 5 5 O 1.33970 * 108.75661 * 359.57317 * 4 3 2 6 6 C 1.34324 * 126.16544 * 179.70967 * 2 1 3 7 7 C 1.50700 * 126.44813 * 359.97438 * 6 2 1 8 8 N 1.46895 * 109.47196 * 89.99670 * 7 6 2 9 9 C 1.46905 * 110.99909 * 180.02562 * 8 7 6 10 10 H 1.08991 * 110.64281 * 328.14618 * 9 8 7 11 11 C 1.55159 * 110.71962 * 205.00434 * 9 8 7 12 12 C 1.54910 * 101.58113 * 206.13873 * 11 9 8 13 13 H 1.09003 * 110.36349 * 278.17200 * 12 11 9 14 14 C 1.52992 * 110.37031 * 155.84695 * 12 11 9 15 15 N 1.47426 * 104.83549 * 37.00693 * 12 11 9 16 16 C 1.34776 * 125.64937 * 155.91052 * 15 12 11 17 17 O 1.21270 * 120.00136 * 0.02562 * 16 15 12 18 18 C 1.50706 * 119.99556 * 180.02562 * 16 15 12 19 19 S 1.81004 * 109.46608 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99823 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00129 * 359.97438 * 20 19 18 22 22 C 1.38795 * 119.99853 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99862 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 120.00198 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47241 * 89.99950 * 24 22 20 26 26 H 1.48499 * 109.47440 * 210.00293 * 24 22 20 27 27 H 1.48506 * 109.47278 * 330.00123 * 24 22 20 28 28 C 1.47030 * 108.70144 * 335.87550 * 15 12 11 29 29 H 1.09007 * 109.46735 * 270.29643 * 1 2 3 30 30 H 1.09002 * 109.47358 * 30.28846 * 1 2 3 31 31 H 1.08997 * 109.47092 * 150.29921 * 1 2 3 32 32 H 1.08002 * 125.62520 * 179.84540 * 4 3 2 33 33 H 1.08999 * 109.47601 * 210.00197 * 7 6 2 34 34 H 1.09003 * 109.46799 * 330.00019 * 7 6 2 35 35 H 1.00893 * 111.00396 * 303.95811 * 8 7 6 36 36 H 1.09001 * 111.00313 * 324.20415 * 11 9 8 37 37 H 1.08996 * 111.00675 * 88.02662 * 11 9 8 38 38 H 1.09006 * 109.47251 * 59.99762 * 14 12 11 39 39 H 1.09003 * 109.47467 * 179.97438 * 14 12 11 40 40 H 1.09003 * 109.47457 * 299.99841 * 14 12 11 41 41 H 1.08992 * 109.47144 * 299.99482 * 18 16 15 42 42 H 1.08995 * 109.46888 * 60.00314 * 18 16 15 43 43 H 0.97005 * 120.00052 * 180.02562 * 23 22 20 44 44 H 1.09002 * 109.88036 * 241.64237 * 28 15 12 45 45 H 1.08993 * 109.88261 * 120.47858 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5431 0.6948 -0.0038 5 8 3.5734 -0.6445 0.0032 6 6 2.2997 -1.0844 0.0055 7 6 1.8494 -2.5225 0.0133 8 7 1.7025 -2.9972 -1.3690 9 6 1.2630 -4.3986 -1.4006 10 1 1.6550 -4.9436 -0.5420 11 6 1.6943 -5.0794 -2.7264 12 6 0.6258 -6.1923 -2.8664 13 1 0.8954 -7.0557 -2.2580 14 6 0.4708 -6.6003 -4.3328 15 7 -0.6211 -5.5833 -2.3687 16 6 -1.8697 -5.9682 -2.6992 17 8 -2.0362 -6.8908 -3.4685 18 6 -3.0590 -5.2520 -2.1126 19 16 -4.5831 -5.9968 -2.7438 20 6 -5.7766 -4.9952 -1.9209 21 1 -5.4543 -4.2041 -1.2601 22 6 -7.1309 -5.2238 -2.1210 23 7 -8.0225 -4.4759 -1.5058 24 14 -7.6884 -6.5927 -3.2632 25 1 -7.8441 -7.8505 -2.4893 26 1 -8.9893 -6.2254 -3.8780 27 1 -6.6749 -6.7904 -4.3304 28 6 -0.2768 -4.4869 -1.4515 29 1 -0.3633 0.0053 1.0277 30 1 -0.3634 0.8874 -0.5183 31 1 -0.3633 -0.8926 -0.5092 32 1 4.4066 1.3435 -0.0071 33 1 2.5902 -3.1325 0.5302 34 1 0.8916 -2.6005 0.5279 35 1 1.0689 -2.4081 -1.8882 36 1 1.6408 -4.3796 -3.5604 37 1 2.6938 -5.5053 -2.6399 38 1 1.4235 -6.9732 -4.7089 39 1 -0.2831 -7.3833 -4.4143 40 1 0.1618 -5.7355 -4.9199 41 1 -3.0356 -5.3384 -1.0264 42 1 -3.0246 -4.1997 -2.3943 43 1 -8.9690 -4.6359 -1.6453 44 1 -0.6691 -4.6988 -0.4569 45 1 -0.6899 -3.5492 -1.8232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486101258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:35 Heat of formation + Delta-G solvation = -33.569071 kcal Electronic energy + Delta-G solvation = -26752.957905 eV Core-core repulsion = 22897.345326 eV Total energy + Delta-G solvation = -3855.612579 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.27638 -41.34041 -39.03532 -36.62343 -36.02593 -34.68649 -33.44120 -32.98589 -30.79721 -30.21798 -28.50557 -27.86427 -26.71156 -25.86084 -23.38462 -23.14906 -22.00554 -21.64038 -20.46580 -19.48109 -18.31695 -17.94695 -17.77673 -17.42180 -17.11962 -16.75458 -16.39177 -15.98247 -15.79313 -15.66677 -15.09476 -14.93685 -14.84587 -14.49427 -14.20514 -14.15080 -14.05178 -13.81963 -13.48593 -13.44499 -13.33890 -13.11278 -13.06618 -12.97662 -12.89658 -12.62031 -12.40834 -12.04280 -11.98532 -11.88389 -11.74118 -11.44915 -11.18381 -10.72111 -10.55035 -9.84410 -9.70231 -9.44045 -9.01710 -8.52913 -6.23810 0.46752 0.95617 1.30136 1.44441 1.52316 1.53987 1.68426 1.86365 2.04397 2.23694 2.66423 2.85482 3.05979 3.33664 3.44168 3.48491 3.83332 3.87366 3.89329 4.00823 4.11649 4.15716 4.24132 4.27593 4.37098 4.42946 4.46968 4.62296 4.65678 4.69452 4.71427 4.76474 4.81739 4.93911 5.03794 5.05965 5.17333 5.23592 5.27898 5.42736 5.56001 5.69412 5.85141 6.09815 6.16889 6.38851 6.76838 6.92408 7.10564 8.59463 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012122 B = 0.002670 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.267580 B =10483.713734 C =12535.483063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.026 4.026 3 N -0.528 5.528 4 C 0.182 3.818 5 O -0.206 6.206 6 C -0.048 4.048 7 C 0.143 3.857 8 N -0.673 5.673 9 C 0.092 3.908 10 H 0.120 0.880 11 C -0.103 4.103 12 C 0.129 3.871 13 H 0.085 0.915 14 C -0.158 4.158 15 N -0.610 5.610 16 C 0.547 3.453 17 O -0.553 6.553 18 C -0.103 4.103 19 S -0.174 6.174 20 C -0.527 4.527 21 H 0.062 0.938 22 C 0.046 3.954 23 N -0.917 5.917 24 Si 0.913 3.087 25 H -0.262 1.262 26 H -0.259 1.259 27 H -0.237 1.237 28 C 0.064 3.936 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.290 0.710 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.348 0.652 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.052 0.948 40 H 0.042 0.958 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.277 0.723 44 H 0.082 0.918 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.383 5.445 3.838 29.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.145 4.145 3 N -0.257 5.257 4 C -0.044 4.044 5 O -0.092 6.092 6 C -0.101 4.101 7 C 0.015 3.985 8 N -0.304 5.304 9 C -0.019 4.019 10 H 0.138 0.862 11 C -0.142 4.142 12 C 0.027 3.973 13 H 0.103 0.897 14 C -0.216 4.216 15 N -0.346 5.346 16 C 0.335 3.665 17 O -0.431 6.431 18 C -0.254 4.254 19 S 0.053 5.947 20 C -0.674 4.674 21 H 0.080 0.920 22 C -0.159 4.159 23 N -0.555 5.555 24 Si 0.735 3.265 25 H -0.187 1.187 26 H -0.184 1.184 27 H -0.161 1.161 28 C -0.061 4.061 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.305 0.695 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.168 0.832 36 H 0.095 0.905 37 H 0.128 0.872 38 H 0.104 0.896 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 28.402 4.572 2.673 28.892 hybrid contribution -1.475 0.629 0.897 1.837 sum 26.927 5.201 3.570 27.656 Atomic orbital electron populations 1.20202 0.85793 1.03761 1.03528 1.21888 0.98718 0.88006 1.05924 1.70371 1.02811 1.32731 1.19828 1.28992 0.98030 0.79319 0.98044 1.84453 1.30205 1.25103 1.69435 1.23243 0.80714 0.97937 1.08200 1.20426 1.01658 0.85549 0.90903 1.60592 1.54816 1.02460 1.12559 1.22614 0.89723 0.89302 1.00221 0.86248 1.22825 0.98357 0.95749 0.97259 1.22153 0.82672 0.96951 0.95545 0.89704 1.22046 1.02814 1.01717 0.94991 1.48404 1.04318 1.35180 1.46656 1.19585 0.83175 0.83041 0.80711 1.90654 1.85243 1.30677 1.36521 1.23221 0.94173 1.03445 1.04541 1.84717 0.98616 1.48236 1.63165 1.22429 0.93336 1.20017 1.31668 0.91963 1.25545 0.95687 0.98139 0.96555 1.70012 1.02270 1.40150 1.43019 0.85886 0.79955 0.79755 0.80904 1.18651 1.18352 1.16115 1.23148 0.98612 0.90184 0.94119 0.90021 0.91151 0.89664 0.69515 0.87481 0.89810 0.83162 0.90533 0.87209 0.89589 0.92912 0.93913 0.87416 0.87608 0.91349 0.89957 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.05 71.24 0.72 -0.43 16 2 C -0.03 -0.47 7.11 41.26 0.29 -0.17 16 3 N -0.53 -10.48 11.29 -304.07 -3.43 -13.91 16 4 C 0.18 2.42 13.23 130.48 1.73 4.14 16 5 O -0.21 -3.25 10.78 -3.77 -0.04 -3.29 16 6 C -0.05 -0.73 6.90 24.79 0.17 -0.56 16 7 C 0.14 1.43 5.71 85.56 0.49 1.92 16 8 N -0.67 -7.24 6.37 -489.45 -3.12 -10.36 16 9 C 0.09 0.95 3.28 46.10 0.15 1.10 16 10 H 0.12 0.85 7.82 -2.39 -0.02 0.83 16 11 C -0.10 -1.26 6.19 31.99 0.20 -1.06 16 12 C 0.13 2.45 3.77 45.46 0.17 2.63 16 13 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 14 C -0.16 -3.60 8.59 71.98 0.62 -2.98 16 15 N -0.61 -14.58 3.24 -788.15 -2.56 -17.14 16 16 C 0.55 18.90 7.65 87.66 0.67 19.57 16 17 O -0.55 -23.25 13.58 -3.00 -0.04 -23.29 16 18 C -0.10 -3.88 5.35 71.24 0.38 -3.50 16 19 S -0.17 -8.76 18.55 -56.49 -1.05 -9.81 16 20 C -0.53 -30.45 10.04 67.95 0.68 -29.77 16 21 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 22 C 0.05 2.70 5.50 84.86 0.47 3.17 16 23 N -0.92 -55.55 13.97 21.65 0.30 -55.25 16 24 Si 0.91 44.87 27.74 68.60 1.90 46.77 16 25 H -0.26 -12.54 7.11 99.48 0.71 -11.84 16 26 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.24 -11.66 6.74 99.48 0.67 -10.99 16 28 C 0.06 1.00 6.21 86.73 0.54 1.54 16 29 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.02 7.79 -2.39 -0.02 1.00 16 32 H 0.29 0.65 8.06 -2.91 -0.02 0.63 16 33 H 0.11 0.85 8.08 -2.39 -0.02 0.83 16 34 H 0.08 0.65 7.80 -2.39 -0.02 0.63 16 35 H 0.35 4.13 8.03 -89.70 -0.72 3.41 16 36 H 0.08 1.08 8.06 -2.39 -0.02 1.06 16 37 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.05 1.60 6.10 -2.39 -0.01 1.58 16 40 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 42 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 43 H 0.28 15.53 8.31 -92.70 -0.77 14.76 16 44 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.07 1.13 7.49 -2.39 -0.02 1.11 16 Total: -1.00 -78.94 384.88 -0.52 -79.46 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.24 Total: 11.21 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 7.27 Total: -4.40 kcal Atomic # 7 Polarization: -87.85 SS G_CDS: -8.81 Total: -96.66 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.08 Total: -26.58 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.90 Total: 46.77 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.05 Total: -9.81 kcal Total: -78.94 -0.52 -79.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486101258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.890 kcal (2) G-P(sol) polarization free energy of solvation -78.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds