Wall clock time and date at job start Tue Mar 31 2020 22:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34477 * 126.16939 * 2 1 4 4 C 1.30251 * 108.70029 * 179.97438 * 3 2 1 5 5 O 1.33962 * 108.76183 * 359.72785 * 4 3 2 6 6 C 1.34330 * 126.16360 * 179.97438 * 2 1 3 7 7 C 1.50702 * 126.44516 * 0.02562 * 6 2 1 8 8 N 1.46904 * 109.47014 * 89.99996 * 7 6 2 9 9 C 1.46899 * 111.00241 * 180.02562 * 8 7 6 10 10 H 1.08997 * 110.88409 * 37.42496 * 9 8 7 11 11 C 1.55156 * 111.00839 * 161.35341 * 9 8 7 12 12 C 1.54327 * 103.02221 * 153.38068 * 11 9 8 13 13 H 1.09005 * 109.99076 * 218.66730 * 12 11 9 14 14 C 1.52994 * 109.78079 * 97.49705 * 12 11 9 15 15 N 1.47022 * 107.26447 * 338.13784 * 12 11 9 16 16 C 1.34780 * 125.64445 * 178.85381 * 15 12 11 17 17 O 1.21280 * 120.00423 * 359.71250 * 16 15 12 18 18 C 1.50701 * 119.99795 * 179.71926 * 16 15 12 19 19 S 1.81002 * 109.47156 * 179.97438 * 18 16 15 20 20 C 1.76193 * 100.00049 * 180.02562 * 19 18 16 21 21 H 1.08005 * 120.00026 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00056 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99640 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00053 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47361 * 89.99587 * 24 22 20 26 26 H 1.48497 * 109.47059 * 210.00081 * 24 22 20 27 27 H 1.48507 * 109.47001 * 329.99878 * 24 22 20 28 28 C 1.47417 * 108.70718 * 358.58681 * 15 12 11 29 29 H 1.08997 * 109.47300 * 270.00744 * 1 2 3 30 30 H 1.09004 * 109.46870 * 30.00568 * 1 2 3 31 31 H 1.09003 * 109.47281 * 150.00178 * 1 2 3 32 32 H 1.08006 * 125.61273 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.47127 * 330.00593 * 7 6 2 34 34 H 1.08999 * 109.47697 * 209.99917 * 7 6 2 35 35 H 1.00903 * 111.00245 * 303.95855 * 8 7 6 36 36 H 1.09000 * 110.71517 * 271.94460 * 11 9 8 37 37 H 1.09003 * 110.71734 * 35.02772 * 11 9 8 38 38 H 1.08995 * 109.47193 * 300.80255 * 14 12 11 39 39 H 1.09004 * 109.46931 * 60.80688 * 14 12 11 40 40 H 1.09006 * 109.47131 * 180.80442 * 14 12 11 41 41 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 42 42 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 43 43 H 0.97010 * 119.99946 * 180.02562 * 23 22 20 44 44 H 1.09003 * 110.36926 * 143.19213 * 28 15 12 45 45 H 1.08999 * 110.36739 * 265.51711 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3007 1.0856 0.0000 4 6 3.5431 0.6946 0.0006 5 8 3.5733 -0.6447 0.0069 6 6 2.2997 -1.0845 0.0005 7 6 1.8492 -2.5226 0.0006 8 7 1.7034 -2.9901 -1.3844 9 6 1.2639 -4.3913 -1.4236 10 1 0.5503 -4.5971 -0.6259 11 6 0.6673 -4.7485 -2.8106 12 6 0.9122 -6.2688 -2.9134 13 1 1.1947 -6.5327 -3.9326 14 6 -0.3543 -7.0258 -2.5088 15 7 2.0078 -6.5977 -1.9898 16 6 2.5069 -7.8303 -1.7705 17 8 2.0438 -8.7853 -2.3573 18 6 3.6404 -8.0218 -0.7961 19 16 4.0825 -9.7755 -0.7218 20 6 5.3911 -9.7115 0.4562 21 1 5.6831 -8.7657 0.8882 22 6 6.0476 -10.8766 0.8282 23 7 5.6922 -12.0291 0.3012 24 14 7.4355 -10.8087 2.0765 25 1 6.8808 -10.9797 3.4433 26 1 8.4066 -11.8967 1.7967 27 1 8.1226 -9.4955 1.9820 28 6 2.4743 -5.3552 -1.3481 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 4.4066 1.3434 0.0011 33 1 0.8911 -2.6032 0.5140 34 1 2.5897 -3.1353 0.5148 35 1 1.0702 -2.3983 -1.9011 36 1 -0.3990 -4.5243 -2.8410 37 1 1.1939 -4.2193 -3.6048 38 1 -0.6253 -6.7607 -1.4869 39 1 -1.1686 -6.7574 -3.1820 40 1 -0.1714 -8.0987 -2.5695 41 1 4.5036 -7.4428 -1.1244 42 1 3.3307 -7.6834 0.1927 43 1 6.1507 -12.8435 0.5614 44 1 2.7453 -5.5433 -0.3092 45 1 3.3228 -4.9420 -1.8935 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486101259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:39 Heat of formation + Delta-G solvation = -7.889410 kcal Electronic energy + Delta-G solvation = -26551.437093 eV Core-core repulsion = 22696.938068 eV Total energy + Delta-G solvation = -3854.499025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.69495 -40.16778 -37.86133 -35.90735 -35.38967 -32.43916 -32.39434 -32.12788 -29.98897 -28.76452 -27.88561 -26.00324 -25.49463 -25.31788 -22.64785 -22.27705 -21.16440 -20.87165 -19.09592 -17.76185 -17.51173 -17.11959 -16.64246 -16.39049 -15.97773 -15.42707 -14.95044 -14.80690 -14.75081 -14.65792 -14.05259 -13.91239 -13.72608 -13.54828 -13.46509 -13.10194 -13.02756 -12.83365 -12.59931 -12.54818 -12.37831 -12.03104 -11.76013 -11.38962 -11.33911 -11.24259 -11.06585 -11.01524 -10.88711 -10.81532 -10.75873 -9.81402 -9.38040 -9.20726 -9.06589 -8.96869 -8.50761 -8.23261 -6.50106 -6.21615 -3.92093 1.03828 2.26020 2.38601 2.87291 3.06838 3.22234 3.25062 3.30070 3.52115 3.73856 3.80040 4.09694 4.20338 4.31070 4.38393 4.40799 4.61571 4.71692 4.90530 5.01011 5.07380 5.10629 5.11929 5.13334 5.13587 5.26291 5.30960 5.41785 5.49727 5.55290 5.56348 5.61167 5.68194 5.69077 5.74016 5.89489 5.94092 6.01661 6.14217 6.26494 6.40704 6.55351 6.75388 7.33726 7.59590 7.68394 8.35308 8.57364 9.23704 10.85805 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011112 B = 0.002541 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.182264 B =11015.676734 C =13205.463263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.011 4.011 3 N -0.489 5.489 4 C 0.175 3.825 5 O -0.192 6.192 6 C -0.037 4.037 7 C 0.141 3.859 8 N -0.673 5.673 9 C 0.073 3.927 10 H 0.067 0.933 11 C -0.127 4.127 12 C 0.139 3.861 13 H 0.076 0.924 14 C -0.164 4.164 15 N -0.622 5.622 16 C 0.550 3.450 17 O -0.513 6.513 18 C -0.147 4.147 19 S -0.060 6.060 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.112 3.888 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.250 0.750 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.349 0.651 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.268 0.732 44 H 0.075 0.925 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.506 25.667 -2.125 28.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.132 4.132 3 N -0.218 5.218 4 C -0.052 4.052 5 O -0.078 6.078 6 C -0.091 4.091 7 C 0.012 3.988 8 N -0.306 5.306 9 C -0.037 4.037 10 H 0.085 0.915 11 C -0.165 4.165 12 C 0.035 3.965 13 H 0.094 0.906 14 C -0.222 4.222 15 N -0.360 5.360 16 C 0.339 3.661 17 O -0.387 6.387 18 C -0.298 4.298 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.012 4.012 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.265 0.735 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.168 0.832 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.610 24.381 -3.061 27.177 hybrid contribution 1.006 0.851 1.807 2.236 sum -10.604 25.232 -1.254 27.399 Atomic orbital electron populations 1.20123 0.86589 1.03258 1.02981 1.21547 0.97926 0.87718 1.05977 1.70360 1.01461 1.31685 1.18291 1.28045 0.97516 0.79426 1.00212 1.84473 1.29971 1.24423 1.68901 1.22955 0.80993 0.97229 1.07915 1.20331 1.00803 0.86684 0.91012 1.60320 1.55374 1.02661 1.12281 1.22681 0.95804 0.87349 0.97876 0.91525 1.22869 1.01564 0.95251 0.96824 1.21406 0.87676 0.93165 0.94211 0.90578 1.22172 0.96134 1.02851 1.01076 1.48531 1.36433 1.06618 1.44446 1.19989 0.83121 0.80575 0.82406 1.90691 1.60072 1.38718 1.49196 1.23519 0.98263 1.08033 0.99940 1.85381 1.44421 0.96525 1.57048 1.22855 1.20553 0.96566 1.28292 0.90964 1.24991 0.97413 0.94539 0.96652 1.70020 1.40481 0.98282 1.41493 0.86170 0.80725 0.78003 0.80611 1.20288 1.20745 1.19676 1.22231 0.96617 0.83700 0.98698 0.90622 0.90371 0.91078 0.73462 0.91257 0.88445 0.83154 0.89921 0.89552 0.92747 0.92066 0.90507 0.89309 0.89456 0.92194 0.90678 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.05 36.01 0.36 -0.05 16 2 C -0.01 -0.10 7.11 -82.81 -0.59 -0.68 16 3 N -0.49 -4.74 11.29 -11.18 -0.13 -4.87 16 4 C 0.17 1.33 13.23 52.09 0.69 2.02 16 5 O -0.19 -1.81 10.77 5.39 0.06 -1.76 16 6 C -0.04 -0.32 6.90 -35.69 -0.25 -0.56 16 7 C 0.14 0.96 5.71 -4.97 -0.03 0.93 16 8 N -0.67 -4.67 6.36 -105.72 -0.67 -5.35 16 9 C 0.07 0.57 3.32 -65.56 -0.22 0.35 16 10 H 0.07 0.49 7.92 -51.93 -0.41 0.08 16 11 C -0.13 -0.96 5.95 -24.90 -0.15 -1.10 16 12 C 0.14 1.60 3.51 -66.95 -0.23 1.37 16 13 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 14 C -0.16 -1.89 9.05 37.15 0.34 -1.55 16 15 N -0.62 -8.81 3.08 -163.01 -0.50 -9.32 16 16 C 0.55 10.54 7.65 -10.98 -0.08 10.46 16 17 O -0.51 -11.66 14.75 5.56 0.08 -11.58 16 18 C -0.15 -3.03 5.16 36.01 0.19 -2.84 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.53 -15.26 9.50 30.94 0.29 -14.96 16 21 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 24 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 C 0.11 1.22 6.34 -2.53 -0.02 1.21 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.27 7.79 -51.93 -0.40 -0.13 16 32 H 0.25 0.70 8.06 -52.48 -0.42 0.27 16 33 H 0.07 0.35 7.74 -51.93 -0.40 -0.05 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.35 1.99 8.52 -39.29 -0.33 1.66 16 36 H 0.08 0.47 7.83 -51.93 -0.41 0.06 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.08 1.15 6.74 -51.93 -0.35 0.80 16 41 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 42 H 0.09 1.67 7.85 -51.91 -0.41 1.26 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.07 0.82 7.48 -51.93 -0.39 0.43 16 45 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 389.22 15.07 5.87 5.87 Total: -1.00 -36.45 389.22 -8.47 -44.91 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.88 Total: -1.58 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 0.21 Total: -3.42 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: -0.57 Total: -45.00 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.14 Total: -13.34 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.45 -8.47 -44.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486101259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.022 kcal (2) G-P(sol) polarization free energy of solvation -36.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds