Wall clock time and date at job start Tue Mar 31 2020 22:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34477 * 126.16939 * 2 1 4 4 C 1.30251 * 108.70029 * 179.97438 * 3 2 1 5 5 O 1.33962 * 108.76183 * 359.72785 * 4 3 2 6 6 C 1.34330 * 126.16360 * 179.97438 * 2 1 3 7 7 C 1.50702 * 126.44516 * 0.02562 * 6 2 1 8 8 N 1.46904 * 109.47014 * 89.99996 * 7 6 2 9 9 C 1.46899 * 111.00241 * 180.02562 * 8 7 6 10 10 H 1.08997 * 110.88409 * 37.42496 * 9 8 7 11 11 C 1.55156 * 111.00839 * 161.35341 * 9 8 7 12 12 C 1.54327 * 103.02221 * 153.38068 * 11 9 8 13 13 H 1.09005 * 109.99076 * 218.66730 * 12 11 9 14 14 C 1.52994 * 109.78079 * 97.49705 * 12 11 9 15 15 N 1.47022 * 107.26447 * 338.13784 * 12 11 9 16 16 C 1.34780 * 125.64445 * 178.85381 * 15 12 11 17 17 O 1.21280 * 120.00423 * 359.71250 * 16 15 12 18 18 C 1.50701 * 119.99795 * 179.71926 * 16 15 12 19 19 S 1.81002 * 109.47156 * 179.97438 * 18 16 15 20 20 C 1.76193 * 100.00049 * 180.02562 * 19 18 16 21 21 H 1.08005 * 120.00026 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00056 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99640 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00053 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47361 * 89.99587 * 24 22 20 26 26 H 1.48497 * 109.47059 * 210.00081 * 24 22 20 27 27 H 1.48507 * 109.47001 * 329.99878 * 24 22 20 28 28 C 1.47417 * 108.70718 * 358.58681 * 15 12 11 29 29 H 1.08997 * 109.47300 * 270.00744 * 1 2 3 30 30 H 1.09004 * 109.46870 * 30.00568 * 1 2 3 31 31 H 1.09003 * 109.47281 * 150.00178 * 1 2 3 32 32 H 1.08006 * 125.61273 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.47127 * 330.00593 * 7 6 2 34 34 H 1.08999 * 109.47697 * 209.99917 * 7 6 2 35 35 H 1.00903 * 111.00245 * 303.95855 * 8 7 6 36 36 H 1.09000 * 110.71517 * 271.94460 * 11 9 8 37 37 H 1.09003 * 110.71734 * 35.02772 * 11 9 8 38 38 H 1.08995 * 109.47193 * 300.80255 * 14 12 11 39 39 H 1.09004 * 109.46931 * 60.80688 * 14 12 11 40 40 H 1.09006 * 109.47131 * 180.80442 * 14 12 11 41 41 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 42 42 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 43 43 H 0.97010 * 119.99946 * 180.02562 * 23 22 20 44 44 H 1.09003 * 110.36926 * 143.19213 * 28 15 12 45 45 H 1.08999 * 110.36739 * 265.51711 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3007 1.0856 0.0000 4 6 3.5431 0.6946 0.0006 5 8 3.5733 -0.6447 0.0069 6 6 2.2997 -1.0845 0.0005 7 6 1.8492 -2.5226 0.0006 8 7 1.7034 -2.9901 -1.3844 9 6 1.2639 -4.3913 -1.4236 10 1 0.5503 -4.5971 -0.6259 11 6 0.6673 -4.7485 -2.8106 12 6 0.9122 -6.2688 -2.9134 13 1 1.1947 -6.5327 -3.9326 14 6 -0.3543 -7.0258 -2.5088 15 7 2.0078 -6.5977 -1.9898 16 6 2.5069 -7.8303 -1.7705 17 8 2.0438 -8.7853 -2.3573 18 6 3.6404 -8.0218 -0.7961 19 16 4.0825 -9.7755 -0.7218 20 6 5.3911 -9.7115 0.4562 21 1 5.6831 -8.7657 0.8882 22 6 6.0476 -10.8766 0.8282 23 7 5.6922 -12.0291 0.3012 24 14 7.4355 -10.8087 2.0765 25 1 6.8808 -10.9797 3.4433 26 1 8.4066 -11.8967 1.7967 27 1 8.1226 -9.4955 1.9820 28 6 2.4743 -5.3552 -1.3481 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 4.4066 1.3434 0.0011 33 1 0.8911 -2.6032 0.5140 34 1 2.5897 -3.1353 0.5148 35 1 1.0702 -2.3983 -1.9011 36 1 -0.3990 -4.5243 -2.8410 37 1 1.1939 -4.2193 -3.6048 38 1 -0.6253 -6.7607 -1.4869 39 1 -1.1686 -6.7574 -3.1820 40 1 -0.1714 -8.0987 -2.5695 41 1 4.5036 -7.4428 -1.1244 42 1 3.3307 -7.6834 0.1927 43 1 6.1507 -12.8435 0.5614 44 1 2.7453 -5.5433 -0.3092 45 1 3.3228 -4.9420 -1.8935 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486101259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:38 Heat of formation + Delta-G solvation = -36.216924 kcal Electronic energy + Delta-G solvation = -26552.665466 eV Core-core repulsion = 22696.938068 eV Total energy + Delta-G solvation = -3855.727398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.27470 -41.29061 -39.00975 -36.67463 -36.01884 -34.60079 -33.43750 -32.89384 -30.68999 -30.22929 -28.48151 -27.67661 -26.87314 -25.90979 -23.46565 -23.07940 -21.76503 -21.62218 -20.41342 -19.57732 -18.21942 -17.97183 -17.67689 -17.25279 -16.89689 -16.69814 -16.58459 -16.12032 -15.83392 -15.47296 -15.26942 -14.83090 -14.63007 -14.30350 -14.16838 -14.12060 -14.09927 -13.98720 -13.66746 -13.35115 -13.17966 -13.10734 -12.98916 -12.90137 -12.87224 -12.60050 -12.08492 -12.03180 -11.96535 -11.74250 -11.65482 -11.45980 -11.15495 -10.87968 -10.30140 -9.79798 -9.70185 -9.48908 -8.69199 -8.35939 -6.14493 0.47264 1.22871 1.41565 1.43722 1.55119 1.56902 1.69030 1.87758 2.06588 2.26075 2.98100 3.02239 3.28319 3.34978 3.40774 3.56958 3.79610 3.90230 3.91281 4.03730 4.14790 4.20172 4.24855 4.37603 4.39732 4.42738 4.45633 4.62476 4.68846 4.72822 4.75423 4.83503 4.86517 4.91811 4.98432 5.07637 5.09571 5.19784 5.31209 5.40116 5.45169 5.51076 5.84640 6.18349 6.29339 6.40654 6.76982 7.05105 7.13418 8.73340 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011112 B = 0.002541 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.182264 B =11015.676734 C =13205.463263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.021 4.021 3 N -0.524 5.524 4 C 0.179 3.821 5 O -0.212 6.212 6 C -0.051 4.051 7 C 0.144 3.856 8 N -0.676 5.676 9 C 0.089 3.911 10 H 0.081 0.919 11 C -0.110 4.110 12 C 0.129 3.871 13 H 0.064 0.936 14 C -0.159 4.159 15 N -0.612 5.612 16 C 0.548 3.452 17 O -0.560 6.560 18 C -0.121 4.121 19 S -0.148 6.148 20 C -0.546 4.546 21 H 0.081 0.919 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.259 1.259 28 C 0.101 3.899 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.286 0.714 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.360 0.640 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.033 0.967 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.272 0.728 44 H 0.076 0.924 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.935 28.590 -1.256 31.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.141 4.141 3 N -0.253 5.253 4 C -0.047 4.047 5 O -0.098 6.098 6 C -0.105 4.105 7 C 0.015 3.985 8 N -0.311 5.311 9 C -0.022 4.022 10 H 0.099 0.901 11 C -0.148 4.148 12 C 0.026 3.974 13 H 0.082 0.918 14 C -0.217 4.217 15 N -0.347 5.347 16 C 0.336 3.664 17 O -0.438 6.438 18 C -0.272 4.272 19 S 0.079 5.921 20 C -0.694 4.694 21 H 0.099 0.901 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.192 1.192 26 H -0.202 1.202 27 H -0.183 1.183 28 C -0.022 4.022 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.301 0.699 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.181 0.819 36 H 0.132 0.868 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.110 0.890 40 H 0.052 0.948 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.071 27.379 -2.199 30.002 hybrid contribution 1.100 0.094 1.476 1.843 sum -10.971 27.473 -0.723 29.591 Atomic orbital electron populations 1.20232 0.84847 1.04170 1.03655 1.22011 0.99178 0.87469 1.05462 1.70383 1.02538 1.32625 1.19795 1.28945 0.98214 0.79227 0.98331 1.84473 1.30700 1.25292 1.69318 1.23245 0.80734 0.97937 1.08550 1.20371 1.01573 0.85593 0.90935 1.60177 1.55939 1.02226 1.12725 1.22499 0.94096 0.87101 0.98478 0.90120 1.22822 1.03686 0.91496 0.96826 1.21705 0.86583 0.96229 0.92852 0.91809 1.22115 0.97073 1.00048 1.02418 1.48449 1.36247 1.05902 1.44131 1.19685 0.82886 0.81808 0.82063 1.90675 1.61451 1.40709 1.50960 1.23317 0.99543 1.02651 1.01673 1.85543 1.45265 1.03542 1.57711 1.23174 1.20650 0.97239 1.28312 0.90087 1.26134 1.00280 0.93906 0.98799 1.70182 1.42092 0.99189 1.43234 0.84949 0.76850 0.78566 0.77592 1.19177 1.20219 1.18259 1.22509 0.98330 0.82968 0.98376 0.89997 0.90669 0.88960 0.69922 0.89053 0.89303 0.81850 0.86754 0.88795 0.91943 0.89039 0.94801 0.88133 0.87748 0.91948 0.90534 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.05 71.24 0.72 0.08 16 2 C -0.02 -0.33 7.11 41.26 0.29 -0.03 16 3 N -0.52 -9.47 11.29 -304.07 -3.43 -12.90 16 4 C 0.18 2.45 13.23 130.48 1.73 4.17 16 5 O -0.21 -3.70 10.77 -3.62 -0.04 -3.74 16 6 C -0.05 -0.78 6.90 24.79 0.17 -0.61 16 7 C 0.14 1.57 5.71 85.56 0.49 2.06 16 8 N -0.68 -7.12 6.36 -488.39 -3.11 -10.23 16 9 C 0.09 1.06 3.32 46.31 0.15 1.22 16 10 H 0.08 0.82 7.92 -2.39 -0.02 0.80 16 11 C -0.11 -1.25 5.95 31.78 0.19 -1.06 16 12 C 0.13 2.76 3.51 45.34 0.16 2.92 16 13 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 14 C -0.16 -3.43 9.05 71.98 0.65 -2.78 16 15 N -0.61 -16.81 3.08 -788.05 -2.43 -19.24 16 16 C 0.55 21.35 7.65 87.66 0.67 22.02 16 17 O -0.56 -26.67 14.75 -3.03 -0.04 -26.71 16 18 C -0.12 -5.03 5.16 71.24 0.37 -4.66 16 19 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 20 C -0.55 -31.58 9.50 67.96 0.65 -30.93 16 21 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 22 C 0.01 0.78 5.49 84.86 0.47 1.25 16 23 N -0.91 -56.33 13.22 21.65 0.29 -56.04 16 24 Si 1.00 43.88 29.55 68.60 2.03 45.91 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 28 C 0.10 2.01 6.34 86.86 0.55 2.56 16 29 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.09 0.39 7.79 -2.39 -0.02 0.37 16 32 H 0.29 0.98 8.06 -2.91 -0.02 0.95 16 33 H 0.09 0.59 7.74 -2.39 -0.02 0.58 16 34 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.36 2.68 8.52 -89.69 -0.76 1.92 16 36 H 0.11 0.68 7.83 -2.39 -0.02 0.66 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.03 1.03 6.74 -2.38 -0.02 1.02 16 41 H 0.10 3.91 8.14 -2.39 -0.02 3.89 16 42 H 0.10 3.95 7.85 -2.40 -0.02 3.93 16 43 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 44 H 0.08 1.52 7.48 -2.39 -0.02 1.50 16 45 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -83.65 389.22 -0.41 -84.06 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.24 Total: 12.22 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 7.25 Total: -3.79 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -8.68 Total: -98.41 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.08 Total: -30.45 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -83.65 -0.41 -84.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486101259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.845 kcal (2) G-P(sol) polarization free energy of solvation -83.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds