Wall clock time and date at job start Tue Mar 31 2020 22:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35454 * 128.00936 * 2 1 4 4 O 1.34043 * 106.44913 * 179.97438 * 3 2 1 5 5 N 1.20932 * 111.56455 * 359.70219 * 4 3 2 6 6 C 1.30172 * 111.60085 * 0.49077 * 5 4 3 7 7 C 1.50706 * 126.79770 * 179.79289 * 6 5 4 8 8 N 1.46895 * 109.47226 * 269.68511 * 7 6 5 9 9 C 1.46900 * 110.99990 * 180.02562 * 8 7 6 10 10 H 1.09002 * 112.84869 * 25.33402 * 9 8 7 11 11 C 1.53786 * 113.61608 * 156.52978 * 9 8 7 12 12 C 1.53783 * 87.08050 * 140.06254 * 11 9 8 13 13 H 1.08993 * 113.61424 * 220.01734 * 12 11 9 14 14 C 1.53005 * 113.61139 * 89.20025 * 12 11 9 15 15 N 1.46495 * 109.46741 * 174.99756 * 14 12 11 16 16 C 1.34780 * 119.99845 * 180.02562 * 15 14 12 17 17 O 1.21291 * 119.99715 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00463 * 179.97438 * 16 15 14 19 19 S 1.81000 * 109.47474 * 179.97438 * 18 16 15 20 20 C 1.76199 * 100.00019 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00181 * 0.02562 * 20 19 18 22 22 C 1.38800 * 120.00054 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99576 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00026 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47229 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46873 * 120.00497 * 24 22 20 27 27 H 1.48497 * 109.47177 * 240.00138 * 24 22 20 28 28 C 1.53781 * 113.61428 * 254.13870 * 9 8 7 29 29 H 1.09004 * 109.47117 * 270.04608 * 1 2 3 30 30 H 1.09003 * 109.47149 * 30.04113 * 1 2 3 31 31 H 1.09001 * 109.47674 * 150.04454 * 1 2 3 32 32 H 1.07995 * 126.77683 * 359.94101 * 3 2 1 33 33 H 1.09000 * 109.46553 * 149.68797 * 7 6 5 34 34 H 1.08994 * 109.47173 * 29.69230 * 7 6 5 35 35 H 1.00904 * 110.99967 * 56.04919 * 8 7 6 36 36 H 1.08992 * 113.61675 * 254.61513 * 11 9 8 37 37 H 1.09000 * 113.60973 * 25.51800 * 11 9 8 38 38 H 1.08994 * 109.47390 * 295.00239 * 14 12 11 39 39 H 1.09006 * 109.46643 * 55.00304 * 14 12 11 40 40 H 0.97000 * 120.00343 * 0.02562 * 15 14 12 41 41 H 1.08994 * 109.47277 * 300.00306 * 18 16 15 42 42 H 1.09007 * 109.46780 * 59.99838 * 18 16 15 43 43 H 0.97004 * 119.99536 * 180.02562 * 23 22 20 44 44 H 1.08999 * 113.61567 * 334.48132 * 28 9 8 45 45 H 1.08998 * 113.61196 * 105.38486 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5877 0.5747 0.0006 5 7 3.5878 -0.6346 0.0068 6 6 2.3775 -1.1140 0.0007 7 6 1.9826 -2.5684 0.0010 8 7 1.8548 -3.0414 -1.3838 9 6 1.4695 -4.4584 -1.4227 10 1 0.9368 -4.7769 -0.5266 11 6 0.7760 -4.8726 -2.7313 12 6 1.5819 -6.1799 -2.6526 13 1 1.9599 -6.5186 -3.6171 14 6 0.8766 -7.2883 -1.8684 15 7 1.6634 -8.5213 -1.9509 16 6 1.2327 -9.6382 -1.3315 17 8 0.1940 -9.6223 -0.7054 18 6 2.0416 -10.9068 -1.4168 19 16 1.2074 -12.2180 -0.4890 20 6 2.3375 -13.5443 -0.7502 21 1 3.2277 -13.3868 -1.3412 22 6 2.0844 -14.7912 -0.1955 23 7 0.9997 -14.9830 0.5252 24 14 3.2829 -16.1971 -0.4719 25 1 4.4143 -15.7256 -1.3101 26 1 3.8008 -16.6705 0.8370 27 1 2.5867 -17.3128 -1.1615 28 6 2.6186 -5.3985 -1.8231 29 1 -0.3633 0.0008 1.0277 30 1 -0.3633 0.8896 -0.5145 31 1 -0.3634 -0.8904 -0.5131 32 1 2.0576 2.1094 -0.0009 33 1 1.0283 -2.6855 0.5145 34 1 2.7460 -3.1520 0.5154 35 1 2.7075 -2.8839 -1.8998 36 1 -0.2996 -5.0158 -2.6292 37 1 1.0417 -4.2466 -3.5832 38 1 0.7783 -6.9891 -0.8249 39 1 -0.1130 -7.4598 -2.2920 40 1 2.4943 -8.5340 -2.4513 41 1 2.1398 -11.2057 -2.4603 42 1 3.0314 -10.7357 -0.9932 43 1 0.8230 -15.8543 0.9131 44 1 3.3871 -4.9162 -2.4272 45 1 3.0294 -5.9661 -0.9882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488811280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:11 Heat of formation + Delta-G solvation = 37.884597 kcal Electronic energy + Delta-G solvation = -25288.092741 eV Core-core repulsion = 21435.578626 eV Total energy + Delta-G solvation = -3852.514115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.33504 -40.15928 -38.79651 -36.41290 -34.60545 -33.59099 -32.43135 -32.28125 -29.79260 -28.56832 -27.47730 -26.02226 -25.77317 -25.34501 -22.86355 -22.08184 -21.54972 -20.38294 -19.33879 -17.99475 -17.88919 -17.73281 -16.65648 -16.26867 -16.00812 -15.65053 -15.39920 -15.11573 -14.80726 -14.39119 -13.98524 -13.93998 -13.80325 -13.67360 -13.52559 -13.20948 -13.00485 -12.70718 -12.68796 -12.59607 -12.45606 -12.19476 -11.71954 -11.48816 -11.39905 -11.07338 -11.02180 -10.78240 -10.75300 -10.65426 -10.33981 -9.80766 -9.77097 -9.39681 -9.08065 -8.87478 -8.84871 -8.23373 -6.50189 -6.22151 -3.92555 1.08357 1.73775 2.85738 3.03263 3.10228 3.21313 3.28041 3.32770 3.57215 3.69943 3.90249 4.06594 4.18932 4.20141 4.33959 4.43767 4.48595 4.55876 4.72965 4.86725 4.96934 5.09104 5.13162 5.14845 5.17393 5.21214 5.25084 5.36399 5.38964 5.42621 5.44126 5.58218 5.64728 5.70554 5.76116 5.78971 5.83180 5.90099 6.01845 6.14048 6.54195 6.62859 6.84841 7.59642 7.71633 7.84996 8.35162 8.61726 9.23386 10.85361 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026272 B = 0.001503 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.514747 B =18625.247211 C =18861.100949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.183 4.183 3 C -0.070 4.070 4 O 0.100 5.900 5 N -0.361 5.361 6 C 0.020 3.980 7 C 0.136 3.864 8 N -0.671 5.671 9 C 0.065 3.935 10 H 0.102 0.898 11 C -0.115 4.115 12 C -0.122 4.122 13 H 0.086 0.914 14 C 0.139 3.861 15 N -0.738 5.738 16 C 0.531 3.469 17 O -0.519 6.519 18 C -0.153 4.153 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C -0.165 4.165 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.215 0.785 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.345 0.655 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.084 0.916 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.774 33.246 -5.267 33.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.187 4.187 3 C -0.152 4.152 4 O 0.034 5.966 5 N -0.065 5.065 6 C -0.139 4.139 7 C 0.007 3.993 8 N -0.303 5.303 9 C -0.045 4.045 10 H 0.120 0.880 11 C -0.154 4.154 12 C -0.142 4.142 13 H 0.104 0.896 14 C 0.015 3.985 15 N -0.392 5.392 16 C 0.317 3.683 17 O -0.393 6.393 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.205 1.205 28 C -0.204 4.204 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.232 0.768 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.164 0.836 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.102 0.898 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.496 32.837 -4.147 33.101 hybrid contribution 2.449 -1.065 -0.891 2.815 sum 2.944 31.772 -5.037 32.303 Atomic orbital electron populations 1.20127 0.87207 1.03718 1.02594 1.21326 0.98833 0.91342 1.07177 1.25788 0.83142 1.01225 1.05004 1.84821 1.29182 1.15434 1.67212 1.73866 1.22475 0.91488 1.18653 1.23410 0.88483 0.98435 1.03576 1.20217 1.01509 0.86394 0.91213 1.60458 1.39770 1.18143 1.11893 1.23168 0.96919 0.85230 0.99169 0.87969 1.23024 0.99874 0.94713 0.97740 1.22484 0.97612 0.94508 0.99578 0.89557 1.21068 0.94690 0.82789 0.99940 1.45988 1.27000 1.10337 1.55912 1.20311 0.85832 0.84144 0.78012 1.90703 1.23712 1.84477 1.40420 1.23529 1.03164 0.97715 1.05997 1.85393 1.31788 1.00758 1.65494 1.22915 1.10077 0.96852 1.38512 0.90879 1.24995 0.95914 0.98174 0.94514 1.70033 1.24739 1.23816 1.31695 0.86112 0.80263 0.80947 0.78144 1.19630 1.20570 1.20549 1.23794 0.97095 0.99058 1.00495 0.90970 0.91087 0.90179 0.76838 0.88592 0.93086 0.83555 0.90667 0.89301 0.91618 0.91230 0.76832 0.89227 0.89281 0.92239 0.89772 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.37 36.00 0.37 0.02 16 2 C -0.18 -1.22 6.32 -104.42 -0.66 -1.88 16 3 C -0.07 -0.39 12.26 29.74 0.36 -0.02 16 4 O 0.10 0.84 11.20 17.17 0.19 1.03 16 5 N -0.36 -3.62 12.07 33.42 0.40 -3.22 16 6 C 0.02 0.17 6.84 -82.10 -0.56 -0.39 16 7 C 0.14 1.03 6.04 -4.98 -0.03 1.00 16 8 N -0.67 -4.89 6.60 -107.13 -0.71 -5.60 16 9 C 0.07 0.47 3.81 -66.90 -0.26 0.21 16 10 H 0.10 0.78 7.46 -51.93 -0.39 0.39 16 11 C -0.11 -0.81 7.47 -25.92 -0.19 -1.00 16 12 C -0.12 -0.95 3.94 -89.66 -0.35 -1.31 16 13 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 14 C 0.14 1.55 5.36 -4.04 -0.02 1.53 16 15 N -0.74 -9.67 5.56 -60.29 -0.33 -10.00 16 16 C 0.53 9.90 7.85 -10.99 -0.09 9.81 16 17 O -0.52 -11.81 15.86 5.55 0.09 -11.73 16 18 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 20 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 24 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 C -0.17 -1.21 7.26 -25.78 -0.19 -1.40 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.22 0.26 8.06 -52.49 -0.42 -0.17 16 33 H 0.10 0.63 8.13 -51.93 -0.42 0.21 16 34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.35 2.60 8.20 -39.29 -0.32 2.27 16 36 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.79 7.39 -51.93 -0.38 0.40 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.40 4.10 8.47 -40.82 -0.35 3.75 16 41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.08 0.56 7.83 -51.93 -0.41 0.16 16 45 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 LS Contribution 395.78 15.07 5.96 5.96 Total: -1.00 -35.65 395.78 -8.97 -44.62 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.88 Total: 1.18 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -1.19 Total: -9.33 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.09 Total: -44.32 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.28 Total: -10.69 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.65 -8.97 -44.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488811280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.508 kcal (2) G-P(sol) polarization free energy of solvation -35.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds