Wall clock time and date at job start Tue Mar 31 2020 22:45:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50691 * 1
3 3 C 1.35454 * 128.00936 * 2 1
4 4 O 1.34043 * 106.44913 * 179.97438 * 3 2 1
5 5 N 1.20932 * 111.56455 * 359.70219 * 4 3 2
6 6 C 1.30172 * 111.60085 * 0.49077 * 5 4 3
7 7 C 1.50706 * 126.79770 * 179.79289 * 6 5 4
8 8 N 1.46895 * 109.47226 * 269.68511 * 7 6 5
9 9 C 1.46900 * 110.99990 * 180.02562 * 8 7 6
10 10 H 1.09002 * 112.84869 * 25.33402 * 9 8 7
11 11 C 1.53786 * 113.61608 * 156.52978 * 9 8 7
12 12 C 1.53783 * 87.08050 * 140.06254 * 11 9 8
13 13 H 1.08993 * 113.61424 * 220.01734 * 12 11 9
14 14 C 1.53005 * 113.61139 * 89.20025 * 12 11 9
15 15 N 1.46495 * 109.46741 * 174.99756 * 14 12 11
16 16 C 1.34780 * 119.99845 * 180.02562 * 15 14 12
17 17 O 1.21291 * 119.99715 * 359.97438 * 16 15 14
18 18 C 1.50696 * 120.00463 * 179.97438 * 16 15 14
19 19 S 1.81000 * 109.47474 * 179.97438 * 18 16 15
20 20 C 1.76199 * 100.00019 * 180.02562 * 19 18 16
21 21 H 1.08000 * 120.00181 * 0.02562 * 20 19 18
22 22 C 1.38800 * 120.00054 * 179.97438 * 20 19 18
23 23 N 1.31633 * 119.99576 * 0.02562 * 22 20 19
24 24 Si 1.86797 * 120.00026 * 180.02562 * 22 20 19
25 25 H 1.48493 * 109.47229 * 0.02562 * 24 22 20
26 26 H 1.48504 * 109.46873 * 120.00497 * 24 22 20
27 27 H 1.48497 * 109.47177 * 240.00138 * 24 22 20
28 28 C 1.53781 * 113.61428 * 254.13870 * 9 8 7
29 29 H 1.09004 * 109.47117 * 270.04608 * 1 2 3
30 30 H 1.09003 * 109.47149 * 30.04113 * 1 2 3
31 31 H 1.09001 * 109.47674 * 150.04454 * 1 2 3
32 32 H 1.07995 * 126.77683 * 359.94101 * 3 2 1
33 33 H 1.09000 * 109.46553 * 149.68797 * 7 6 5
34 34 H 1.08994 * 109.47173 * 29.69230 * 7 6 5
35 35 H 1.00904 * 110.99967 * 56.04919 * 8 7 6
36 36 H 1.08992 * 113.61675 * 254.61513 * 11 9 8
37 37 H 1.09000 * 113.60973 * 25.51800 * 11 9 8
38 38 H 1.08994 * 109.47390 * 295.00239 * 14 12 11
39 39 H 1.09006 * 109.46643 * 55.00304 * 14 12 11
40 40 H 0.97000 * 120.00343 * 0.02562 * 15 14 12
41 41 H 1.08994 * 109.47277 * 300.00306 * 18 16 15
42 42 H 1.09007 * 109.46780 * 59.99838 * 18 16 15
43 43 H 0.97004 * 119.99536 * 180.02562 * 23 22 20
44 44 H 1.08999 * 113.61567 * 334.48132 * 28 9 8
45 45 H 1.08998 * 113.61196 * 105.38486 * 28 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.3410 1.0673 0.0000
4 8 3.5877 0.5747 0.0006
5 7 3.5878 -0.6346 0.0068
6 6 2.3775 -1.1140 0.0007
7 6 1.9826 -2.5684 0.0010
8 7 1.8548 -3.0414 -1.3838
9 6 1.4695 -4.4584 -1.4227
10 1 0.9368 -4.7769 -0.5266
11 6 0.7760 -4.8726 -2.7313
12 6 1.5819 -6.1799 -2.6526
13 1 1.9599 -6.5186 -3.6171
14 6 0.8766 -7.2883 -1.8684
15 7 1.6634 -8.5213 -1.9509
16 6 1.2327 -9.6382 -1.3315
17 8 0.1940 -9.6223 -0.7054
18 6 2.0416 -10.9068 -1.4168
19 16 1.2074 -12.2180 -0.4890
20 6 2.3375 -13.5443 -0.7502
21 1 3.2277 -13.3868 -1.3412
22 6 2.0844 -14.7912 -0.1955
23 7 0.9997 -14.9830 0.5252
24 14 3.2829 -16.1971 -0.4719
25 1 4.4143 -15.7256 -1.3101
26 1 3.8008 -16.6705 0.8370
27 1 2.5867 -17.3128 -1.1615
28 6 2.6186 -5.3985 -1.8231
29 1 -0.3633 0.0008 1.0277
30 1 -0.3633 0.8896 -0.5145
31 1 -0.3634 -0.8904 -0.5131
32 1 2.0576 2.1094 -0.0009
33 1 1.0283 -2.6855 0.5145
34 1 2.7460 -3.1520 0.5154
35 1 2.7075 -2.8839 -1.8998
36 1 -0.2996 -5.0158 -2.6292
37 1 1.0417 -4.2466 -3.5832
38 1 0.7783 -6.9891 -0.8249
39 1 -0.1130 -7.4598 -2.2920
40 1 2.4943 -8.5340 -2.4513
41 1 2.1398 -11.2057 -2.4603
42 1 3.0314 -10.7357 -0.9932
43 1 0.8230 -15.8543 0.9131
44 1 3.3871 -4.9162 -2.4272
45 1 3.0294 -5.9661 -0.9882
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001488811280.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:45:11
Heat of formation + Delta-G solvation = 37.884597 kcal
Electronic energy + Delta-G solvation = -25288.092741 eV
Core-core repulsion = 21435.578626 eV
Total energy + Delta-G solvation = -3852.514115 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-45.33504 -40.15928 -38.79651 -36.41290 -34.60545 -33.59099 -32.43135 -32.28125
-29.79260 -28.56832 -27.47730 -26.02226 -25.77317 -25.34501 -22.86355 -22.08184
-21.54972 -20.38294 -19.33879 -17.99475 -17.88919 -17.73281 -16.65648 -16.26867
-16.00812 -15.65053 -15.39920 -15.11573 -14.80726 -14.39119 -13.98524 -13.93998
-13.80325 -13.67360 -13.52559 -13.20948 -13.00485 -12.70718 -12.68796 -12.59607
-12.45606 -12.19476 -11.71954 -11.48816 -11.39905 -11.07338 -11.02180 -10.78240
-10.75300 -10.65426 -10.33981 -9.80766 -9.77097 -9.39681 -9.08065 -8.87478
-8.84871 -8.23373 -6.50189 -6.22151 -3.92555 1.08357 1.73775 2.85738
3.03263 3.10228 3.21313 3.28041 3.32770 3.57215 3.69943 3.90249
4.06594 4.18932 4.20141 4.33959 4.43767 4.48595 4.55876 4.72965
4.86725 4.96934 5.09104 5.13162 5.14845 5.17393 5.21214 5.25084
5.36399 5.38964 5.42621 5.44126 5.58218 5.64728 5.70554 5.76116
5.78971 5.83180 5.90099 6.01845 6.14048 6.54195 6.62859 6.84841
7.59642 7.71633 7.84996 8.35162 8.61726 9.23386 10.85361
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.026272 B = 0.001503 C = 0.001484
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1065.514747 B =18625.247211 C =18861.100949
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C -0.183 4.183
3 C -0.070 4.070
4 O 0.100 5.900
5 N -0.361 5.361
6 C 0.020 3.980
7 C 0.136 3.864
8 N -0.671 5.671
9 C 0.065 3.935
10 H 0.102 0.898
11 C -0.115 4.115
12 C -0.122 4.122
13 H 0.086 0.914
14 C 0.139 3.861
15 N -0.738 5.738
16 C 0.531 3.469
17 O -0.519 6.519
18 C -0.153 4.153
19 S -0.061 6.061
20 C -0.535 4.535
21 H 0.073 0.927
22 C 0.073 3.927
23 N -0.867 5.867
24 Si 0.919 3.081
25 H -0.272 1.272
26 H -0.280 1.280
27 H -0.280 1.280
28 C -0.165 4.165
29 H 0.072 0.928
30 H 0.070 0.930
31 H 0.079 0.921
32 H 0.215 0.785
33 H 0.096 0.904
34 H 0.051 0.949
35 H 0.345 0.655
36 H 0.075 0.925
37 H 0.088 0.912
38 H 0.066 0.934
39 H 0.069 0.931
40 H 0.398 0.602
41 H 0.089 0.911
42 H 0.089 0.911
43 H 0.268 0.732
44 H 0.084 0.916
45 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.774 33.246 -5.267 33.707
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.187 4.187
3 C -0.152 4.152
4 O 0.034 5.966
5 N -0.065 5.065
6 C -0.139 4.139
7 C 0.007 3.993
8 N -0.303 5.303
9 C -0.045 4.045
10 H 0.120 0.880
11 C -0.154 4.154
12 C -0.142 4.142
13 H 0.104 0.896
14 C 0.015 3.985
15 N -0.392 5.392
16 C 0.317 3.683
17 O -0.393 6.393
18 C -0.304 4.304
19 S 0.166 5.834
20 C -0.684 4.684
21 H 0.091 0.909
22 C -0.136 4.136
23 N -0.503 5.503
24 Si 0.745 3.255
25 H -0.196 1.196
26 H -0.206 1.206
27 H -0.205 1.205
28 C -0.204 4.204
29 H 0.090 0.910
30 H 0.089 0.911
31 H 0.098 0.902
32 H 0.232 0.768
33 H 0.114 0.886
34 H 0.069 0.931
35 H 0.164 0.836
36 H 0.093 0.907
37 H 0.107 0.893
38 H 0.084 0.916
39 H 0.088 0.912
40 H 0.232 0.768
41 H 0.108 0.892
42 H 0.107 0.893
43 H 0.078 0.922
44 H 0.102 0.898
45 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 0.496 32.837 -4.147 33.101
hybrid contribution 2.449 -1.065 -0.891 2.815
sum 2.944 31.772 -5.037 32.303
Atomic orbital electron populations
1.20127 0.87207 1.03718 1.02594 1.21326 0.98833 0.91342 1.07177
1.25788 0.83142 1.01225 1.05004 1.84821 1.29182 1.15434 1.67212
1.73866 1.22475 0.91488 1.18653 1.23410 0.88483 0.98435 1.03576
1.20217 1.01509 0.86394 0.91213 1.60458 1.39770 1.18143 1.11893
1.23168 0.96919 0.85230 0.99169 0.87969 1.23024 0.99874 0.94713
0.97740 1.22484 0.97612 0.94508 0.99578 0.89557 1.21068 0.94690
0.82789 0.99940 1.45988 1.27000 1.10337 1.55912 1.20311 0.85832
0.84144 0.78012 1.90703 1.23712 1.84477 1.40420 1.23529 1.03164
0.97715 1.05997 1.85393 1.31788 1.00758 1.65494 1.22915 1.10077
0.96852 1.38512 0.90879 1.24995 0.95914 0.98174 0.94514 1.70033
1.24739 1.23816 1.31695 0.86112 0.80263 0.80947 0.78144 1.19630
1.20570 1.20549 1.23794 0.97095 0.99058 1.00495 0.90970 0.91087
0.90179 0.76838 0.88592 0.93086 0.83555 0.90667 0.89301 0.91618
0.91230 0.76832 0.89227 0.89281 0.92239 0.89772 0.90922
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.36 10.37 36.00 0.37 0.02 16
2 C -0.18 -1.22 6.32 -104.42 -0.66 -1.88 16
3 C -0.07 -0.39 12.26 29.74 0.36 -0.02 16
4 O 0.10 0.84 11.20 17.17 0.19 1.03 16
5 N -0.36 -3.62 12.07 33.42 0.40 -3.22 16
6 C 0.02 0.17 6.84 -82.10 -0.56 -0.39 16
7 C 0.14 1.03 6.04 -4.98 -0.03 1.00 16
8 N -0.67 -4.89 6.60 -107.13 -0.71 -5.60 16
9 C 0.07 0.47 3.81 -66.90 -0.26 0.21 16
10 H 0.10 0.78 7.46 -51.93 -0.39 0.39 16
11 C -0.11 -0.81 7.47 -25.92 -0.19 -1.00 16
12 C -0.12 -0.95 3.94 -89.66 -0.35 -1.31 16
13 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16
14 C 0.14 1.55 5.36 -4.04 -0.02 1.53 16
15 N -0.74 -9.67 5.56 -60.29 -0.33 -10.00 16
16 C 0.53 9.90 7.85 -10.99 -0.09 9.81 16
17 O -0.52 -11.81 15.86 5.55 0.09 -11.73 16
18 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16
19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16
20 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16
21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16
22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16
23 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16
24 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16
25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16
26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
28 C -0.17 -1.21 7.26 -25.78 -0.19 -1.40 16
29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16
30 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16
31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16
32 H 0.22 0.26 8.06 -52.49 -0.42 -0.17 16
33 H 0.10 0.63 8.13 -51.93 -0.42 0.21 16
34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16
35 H 0.35 2.60 8.20 -39.29 -0.32 2.27 16
36 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16
37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16
38 H 0.07 0.79 7.39 -51.93 -0.38 0.40 16
39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
40 H 0.40 4.10 8.47 -40.82 -0.35 3.75 16
41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16
42 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16
43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16
44 H 0.08 0.56 7.83 -51.93 -0.41 0.16 16
45 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16
LS Contribution 395.78 15.07 5.96 5.96
Total: -1.00 -35.65 395.78 -8.97 -44.62
By element:
Atomic # 1 Polarization: 8.06 SS G_CDS: -6.88 Total: 1.18 kcal
Atomic # 6 Polarization: -8.14 SS G_CDS: -1.19 Total: -9.33 kcal
Atomic # 7 Polarization: -44.41 SS G_CDS: 0.09 Total: -44.32 kcal
Atomic # 8 Polarization: -10.97 SS G_CDS: 0.28 Total: -10.69 kcal
Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal
Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal
Total LS contribution 5.96 Total: 5.96 kcal
Total: -35.65 -8.97 -44.62 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001488811280.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.508 kcal
(2) G-P(sol) polarization free energy of solvation -35.654 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.853 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.623 kcal
(6) G-S(sol) free energy of system = (1) + (5) 37.885 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds