Wall clock time and date at job start Tue Mar 31 2020 22:45:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50691 * 1
3 3 C 1.35454 * 128.00936 * 2 1
4 4 O 1.34043 * 106.44913 * 179.97438 * 3 2 1
5 5 N 1.20932 * 111.56455 * 359.70219 * 4 3 2
6 6 C 1.30172 * 111.60085 * 0.49077 * 5 4 3
7 7 C 1.50706 * 126.79770 * 179.79289 * 6 5 4
8 8 N 1.46895 * 109.47226 * 269.68511 * 7 6 5
9 9 C 1.46900 * 110.99990 * 180.02562 * 8 7 6
10 10 H 1.09002 * 112.84869 * 25.33402 * 9 8 7
11 11 C 1.53786 * 113.61608 * 156.52978 * 9 8 7
12 12 C 1.53783 * 87.08050 * 140.06254 * 11 9 8
13 13 H 1.08993 * 113.61424 * 220.01734 * 12 11 9
14 14 C 1.53005 * 113.61139 * 89.20025 * 12 11 9
15 15 N 1.46495 * 109.46741 * 174.99756 * 14 12 11
16 16 C 1.34780 * 119.99845 * 180.02562 * 15 14 12
17 17 O 1.21291 * 119.99715 * 359.97438 * 16 15 14
18 18 C 1.50696 * 120.00463 * 179.97438 * 16 15 14
19 19 S 1.81000 * 109.47474 * 179.97438 * 18 16 15
20 20 C 1.76199 * 100.00019 * 180.02562 * 19 18 16
21 21 H 1.08000 * 120.00181 * 0.02562 * 20 19 18
22 22 C 1.38800 * 120.00054 * 179.97438 * 20 19 18
23 23 N 1.31633 * 119.99576 * 0.02562 * 22 20 19
24 24 Si 1.86797 * 120.00026 * 180.02562 * 22 20 19
25 25 H 1.48493 * 109.47229 * 0.02562 * 24 22 20
26 26 H 1.48504 * 109.46873 * 120.00497 * 24 22 20
27 27 H 1.48497 * 109.47177 * 240.00138 * 24 22 20
28 28 C 1.53781 * 113.61428 * 254.13870 * 9 8 7
29 29 H 1.09004 * 109.47117 * 270.04608 * 1 2 3
30 30 H 1.09003 * 109.47149 * 30.04113 * 1 2 3
31 31 H 1.09001 * 109.47674 * 150.04454 * 1 2 3
32 32 H 1.07995 * 126.77683 * 359.94101 * 3 2 1
33 33 H 1.09000 * 109.46553 * 149.68797 * 7 6 5
34 34 H 1.08994 * 109.47173 * 29.69230 * 7 6 5
35 35 H 1.00904 * 110.99967 * 56.04919 * 8 7 6
36 36 H 1.08992 * 113.61675 * 254.61513 * 11 9 8
37 37 H 1.09000 * 113.60973 * 25.51800 * 11 9 8
38 38 H 1.08994 * 109.47390 * 295.00239 * 14 12 11
39 39 H 1.09006 * 109.46643 * 55.00304 * 14 12 11
40 40 H 0.97000 * 120.00343 * 0.02562 * 15 14 12
41 41 H 1.08994 * 109.47277 * 300.00306 * 18 16 15
42 42 H 1.09007 * 109.46780 * 59.99838 * 18 16 15
43 43 H 0.97004 * 119.99536 * 180.02562 * 23 22 20
44 44 H 1.08999 * 113.61567 * 334.48132 * 28 9 8
45 45 H 1.08998 * 113.61196 * 105.38486 * 28 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.3410 1.0673 0.0000
4 8 3.5877 0.5747 0.0006
5 7 3.5878 -0.6346 0.0068
6 6 2.3775 -1.1140 0.0007
7 6 1.9826 -2.5684 0.0010
8 7 1.8548 -3.0414 -1.3838
9 6 1.4695 -4.4584 -1.4227
10 1 0.9368 -4.7769 -0.5266
11 6 0.7760 -4.8726 -2.7313
12 6 1.5819 -6.1799 -2.6526
13 1 1.9599 -6.5186 -3.6171
14 6 0.8766 -7.2883 -1.8684
15 7 1.6634 -8.5213 -1.9509
16 6 1.2327 -9.6382 -1.3315
17 8 0.1940 -9.6223 -0.7054
18 6 2.0416 -10.9068 -1.4168
19 16 1.2074 -12.2180 -0.4890
20 6 2.3375 -13.5443 -0.7502
21 1 3.2277 -13.3868 -1.3412
22 6 2.0844 -14.7912 -0.1955
23 7 0.9997 -14.9830 0.5252
24 14 3.2829 -16.1971 -0.4719
25 1 4.4143 -15.7256 -1.3101
26 1 3.8008 -16.6705 0.8370
27 1 2.5867 -17.3128 -1.1615
28 6 2.6186 -5.3985 -1.8231
29 1 -0.3633 0.0008 1.0277
30 1 -0.3633 0.8896 -0.5145
31 1 -0.3634 -0.8904 -0.5131
32 1 2.0576 2.1094 -0.0009
33 1 1.0283 -2.6855 0.5145
34 1 2.7460 -3.1520 0.5154
35 1 2.7075 -2.8839 -1.8998
36 1 -0.2996 -5.0158 -2.6292
37 1 1.0417 -4.2466 -3.5832
38 1 0.7783 -6.9891 -0.8249
39 1 -0.1130 -7.4598 -2.2920
40 1 2.4943 -8.5340 -2.4513
41 1 2.1398 -11.2057 -2.4603
42 1 3.0314 -10.7357 -0.9932
43 1 0.8230 -15.8543 0.9131
44 1 3.3871 -4.9162 -2.4272
45 1 3.0294 -5.9661 -0.9882
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001488811280.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:45:11
Heat of formation + Delta-G solvation = 12.096351 kcal
Electronic energy + Delta-G solvation = -25289.211004 eV
Core-core repulsion = 21435.578626 eV
Total energy + Delta-G solvation = -3853.632377 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-45.90609 -41.04557 -40.03271 -37.04636 -35.57600 -34.59438 -34.36453 -32.90552
-31.24809 -29.01385 -28.35863 -27.65487 -26.63629 -26.43537 -23.55819 -22.61144
-22.07304 -21.78023 -20.25032 -19.59711 -18.59347 -18.39188 -17.74914 -17.53929
-16.89217 -16.81176 -16.62517 -16.36699 -15.99645 -15.70142 -15.15529 -14.87555
-14.60469 -14.46738 -14.25376 -14.15113 -14.02519 -13.77115 -13.48848 -13.27176
-13.23175 -13.16837 -12.97101 -12.92195 -12.70758 -12.61912 -12.13077 -12.02415
-11.70744 -11.42176 -11.30378 -11.16613 -11.01640 -10.87010 -10.28281 -10.23008
-10.10358 -9.44859 -8.67623 -8.35711 -6.13797 0.59006 1.20302 1.26608
1.40867 1.46714 1.57939 1.60579 2.25175 2.29687 2.44415 2.98605
3.01847 3.30557 3.33811 3.50220 3.58160 3.67224 3.74153 3.93639
4.03499 4.05203 4.25363 4.27712 4.29312 4.39237 4.45414 4.50112
4.55474 4.68497 4.80044 4.83764 4.85972 4.86866 4.93326 5.00636
5.04622 5.09903 5.16702 5.31368 5.39820 5.41345 5.47797 5.94662
6.19228 6.25313 6.50680 7.05796 7.24067 7.32060 8.73824
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.026272 B = 0.001503 C = 0.001484
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1065.514747 B =18625.247211 C =18861.100949
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C -0.199 4.199
3 C -0.057 4.057
4 O 0.088 5.912
5 N -0.396 5.396
6 C 0.007 3.993
7 C 0.139 3.861
8 N -0.667 5.667
9 C 0.064 3.936
10 H 0.096 0.904
11 C -0.106 4.106
12 C -0.112 4.112
13 H 0.101 0.899
14 C 0.138 3.862
15 N -0.711 5.711
16 C 0.532 3.468
17 O -0.567 6.567
18 C -0.130 4.130
19 S -0.152 6.152
20 C -0.547 4.547
21 H 0.083 0.917
22 C 0.013 3.987
23 N -0.911 5.911
24 Si 1.000 3.000
25 H -0.257 1.257
26 H -0.274 1.274
27 H -0.273 1.273
28 C -0.159 4.159
29 H 0.078 0.922
30 H 0.088 0.912
31 H 0.071 0.929
32 H 0.257 0.743
33 H 0.102 0.898
34 H 0.040 0.960
35 H 0.345 0.655
36 H 0.073 0.927
37 H 0.099 0.901
38 H 0.057 0.943
39 H 0.062 0.938
40 H 0.416 0.584
41 H 0.110 0.890
42 H 0.108 0.892
43 H 0.271 0.729
44 H 0.096 0.904
45 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.080 34.745 -6.886 35.555
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.203 4.203
3 C -0.137 4.137
4 O 0.023 5.977
5 N -0.102 5.102
6 C -0.152 4.152
7 C 0.009 3.991
8 N -0.298 5.298
9 C -0.046 4.046
10 H 0.114 0.886
11 C -0.145 4.145
12 C -0.132 4.132
13 H 0.119 0.881
14 C 0.015 3.985
15 N -0.365 5.365
16 C 0.318 3.682
17 O -0.446 6.446
18 C -0.281 4.281
19 S 0.075 5.925
20 C -0.695 4.695
21 H 0.101 0.899
22 C -0.191 4.191
23 N -0.548 5.548
24 Si 0.821 3.179
25 H -0.181 1.181
26 H -0.199 1.199
27 H -0.199 1.199
28 C -0.198 4.198
29 H 0.097 0.903
30 H 0.107 0.893
31 H 0.090 0.910
32 H 0.273 0.727
33 H 0.121 0.879
34 H 0.058 0.942
35 H 0.164 0.836
36 H 0.092 0.908
37 H 0.117 0.883
38 H 0.075 0.925
39 H 0.080 0.920
40 H 0.253 0.747
41 H 0.128 0.872
42 H 0.127 0.873
43 H 0.080 0.920
44 H 0.114 0.886
45 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 1.837 34.388 -5.803 34.922
hybrid contribution 2.024 -1.353 -0.413 2.469
sum 3.861 33.035 -6.216 33.836
Atomic orbital electron populations
1.20154 0.85738 1.04161 1.03164 1.21663 0.99905 0.90999 1.07719
1.26582 0.81744 1.02781 1.02639 1.84770 1.30642 1.14978 1.67346
1.73857 1.23517 0.92357 1.20493 1.23683 0.88765 0.99202 1.03520
1.20196 1.01409 0.86138 0.91316 1.60466 1.39649 1.18044 1.11660
1.23159 0.96961 0.85247 0.99185 0.88635 1.22990 0.99690 0.94022
0.97806 1.22343 0.97655 0.93589 0.99595 0.88058 1.21194 0.94617
0.82608 1.00111 1.45745 1.27372 1.09367 1.53988 1.20067 0.85040
0.84922 0.78169 1.90692 1.25737 1.85236 1.42927 1.23375 1.03111
0.95845 1.05783 1.85570 1.34577 1.04383 1.67965 1.23247 1.10229
0.97286 1.38702 0.89919 1.26130 0.97844 1.01265 0.93889 1.70193
1.26958 1.24733 1.32882 0.84895 0.77800 0.76809 0.78373 1.18061
1.19950 1.19866 1.23776 0.97193 0.98765 1.00116 0.90306 0.89304
0.91050 0.72726 0.87934 0.94218 0.83635 0.90783 0.88255 0.92511
0.91964 0.74725 0.87165 0.87331 0.91979 0.88550 0.92091
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.55 10.37 71.23 0.74 0.19 16
2 C -0.20 -2.39 6.32 -19.74 -0.12 -2.52 16
3 C -0.06 -0.52 12.26 67.18 0.82 0.30 16
4 O 0.09 1.42 11.20 71.60 0.80 2.22 16
5 N -0.40 -7.96 12.07 -49.55 -0.60 -8.56 16
6 C 0.01 0.12 6.84 43.58 0.30 0.42 16
7 C 0.14 2.09 6.04 85.56 0.52 2.61 16
8 N -0.67 -9.18 6.60 -492.85 -3.25 -12.43 16
9 C 0.06 0.86 3.81 45.44 0.17 1.03 16
10 H 0.10 1.42 7.46 -2.39 -0.02 1.40 16
11 C -0.11 -1.29 7.47 31.12 0.23 -1.06 16
12 C -0.11 -1.51 3.94 -10.17 -0.04 -1.55 16
13 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16
14 C 0.14 2.92 5.36 86.38 0.46 3.38 16
15 N -0.71 -17.48 5.56 -463.05 -2.57 -20.05 16
16 C 0.53 19.59 7.85 87.66 0.69 20.28 16
17 O -0.57 -26.40 15.86 -3.06 -0.05 -26.45 16
18 C -0.13 -5.15 6.16 71.23 0.44 -4.71 16
19 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16
20 C -0.55 -31.37 9.50 67.95 0.65 -30.73 16
21 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16
22 C 0.01 0.77 5.49 84.86 0.47 1.23 16
23 N -0.91 -56.17 13.22 21.65 0.29 -55.88 16
24 Si 1.00 43.73 29.55 68.60 2.03 45.75 16
25 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16
26 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16
27 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16
28 C -0.16 -2.07 7.26 31.21 0.23 -1.85 16
29 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16
30 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16
31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16
32 H 0.26 -0.25 8.06 -2.91 -0.02 -0.27 16
33 H 0.10 1.35 8.13 -2.39 -0.02 1.33 16
34 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16
35 H 0.34 4.86 8.20 -89.69 -0.74 4.13 16
36 H 0.07 0.95 8.10 -2.39 -0.02 0.93 16
37 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16
38 H 0.06 1.34 7.39 -2.39 -0.02 1.32 16
39 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16
40 H 0.42 7.40 8.47 -92.71 -0.79 6.61 16
41 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16
42 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16
43 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16
44 H 0.10 1.07 7.83 -2.39 -0.02 1.05 16
45 H 0.06 0.96 8.11 -2.39 -0.02 0.94 16
Total: -1.00 -80.25 395.78 0.52 -79.73
By element:
Atomic # 1 Polarization: 18.80 SS G_CDS: -0.50 Total: 18.30 kcal
Atomic # 6 Polarization: -18.51 SS G_CDS: 5.55 Total: -12.96 kcal
Atomic # 7 Polarization: -90.78 SS G_CDS: -6.14 Total: -96.92 kcal
Atomic # 8 Polarization: -24.99 SS G_CDS: 0.75 Total: -24.23 kcal
Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal
Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal
Total: -80.25 0.52 -79.73 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001488811280.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 91.825 kcal
(2) G-P(sol) polarization free energy of solvation -80.251 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.574 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.522 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.729 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.096 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds