Wall clock time and date at job start Tue Mar 31 2020 22:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35454 * 128.00936 * 2 1 4 4 O 1.34043 * 106.44913 * 179.97438 * 3 2 1 5 5 N 1.20932 * 111.56455 * 359.70219 * 4 3 2 6 6 C 1.30172 * 111.60085 * 0.49077 * 5 4 3 7 7 C 1.50706 * 126.79770 * 179.79289 * 6 5 4 8 8 N 1.46895 * 109.47226 * 269.68511 * 7 6 5 9 9 C 1.46900 * 110.99990 * 180.02562 * 8 7 6 10 10 H 1.09002 * 112.84869 * 25.33402 * 9 8 7 11 11 C 1.53786 * 113.61608 * 156.52978 * 9 8 7 12 12 C 1.53783 * 87.08050 * 140.06254 * 11 9 8 13 13 H 1.08993 * 113.61424 * 220.01734 * 12 11 9 14 14 C 1.53005 * 113.61139 * 89.20025 * 12 11 9 15 15 N 1.46495 * 109.46741 * 174.99756 * 14 12 11 16 16 C 1.34780 * 119.99845 * 180.02562 * 15 14 12 17 17 O 1.21291 * 119.99715 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00463 * 179.97438 * 16 15 14 19 19 S 1.81000 * 109.47474 * 179.97438 * 18 16 15 20 20 C 1.76199 * 100.00019 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00181 * 0.02562 * 20 19 18 22 22 C 1.38800 * 120.00054 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99576 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00026 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47229 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46873 * 120.00497 * 24 22 20 27 27 H 1.48497 * 109.47177 * 240.00138 * 24 22 20 28 28 C 1.53781 * 113.61428 * 254.13870 * 9 8 7 29 29 H 1.09004 * 109.47117 * 270.04608 * 1 2 3 30 30 H 1.09003 * 109.47149 * 30.04113 * 1 2 3 31 31 H 1.09001 * 109.47674 * 150.04454 * 1 2 3 32 32 H 1.07995 * 126.77683 * 359.94101 * 3 2 1 33 33 H 1.09000 * 109.46553 * 149.68797 * 7 6 5 34 34 H 1.08994 * 109.47173 * 29.69230 * 7 6 5 35 35 H 1.00904 * 110.99967 * 56.04919 * 8 7 6 36 36 H 1.08992 * 113.61675 * 254.61513 * 11 9 8 37 37 H 1.09000 * 113.60973 * 25.51800 * 11 9 8 38 38 H 1.08994 * 109.47390 * 295.00239 * 14 12 11 39 39 H 1.09006 * 109.46643 * 55.00304 * 14 12 11 40 40 H 0.97000 * 120.00343 * 0.02562 * 15 14 12 41 41 H 1.08994 * 109.47277 * 300.00306 * 18 16 15 42 42 H 1.09007 * 109.46780 * 59.99838 * 18 16 15 43 43 H 0.97004 * 119.99536 * 180.02562 * 23 22 20 44 44 H 1.08999 * 113.61567 * 334.48132 * 28 9 8 45 45 H 1.08998 * 113.61196 * 105.38486 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5877 0.5747 0.0006 5 7 3.5878 -0.6346 0.0068 6 6 2.3775 -1.1140 0.0007 7 6 1.9826 -2.5684 0.0010 8 7 1.8548 -3.0414 -1.3838 9 6 1.4695 -4.4584 -1.4227 10 1 0.9368 -4.7769 -0.5266 11 6 0.7760 -4.8726 -2.7313 12 6 1.5819 -6.1799 -2.6526 13 1 1.9599 -6.5186 -3.6171 14 6 0.8766 -7.2883 -1.8684 15 7 1.6634 -8.5213 -1.9509 16 6 1.2327 -9.6382 -1.3315 17 8 0.1940 -9.6223 -0.7054 18 6 2.0416 -10.9068 -1.4168 19 16 1.2074 -12.2180 -0.4890 20 6 2.3375 -13.5443 -0.7502 21 1 3.2277 -13.3868 -1.3412 22 6 2.0844 -14.7912 -0.1955 23 7 0.9997 -14.9830 0.5252 24 14 3.2829 -16.1971 -0.4719 25 1 4.4143 -15.7256 -1.3101 26 1 3.8008 -16.6705 0.8370 27 1 2.5867 -17.3128 -1.1615 28 6 2.6186 -5.3985 -1.8231 29 1 -0.3633 0.0008 1.0277 30 1 -0.3633 0.8896 -0.5145 31 1 -0.3634 -0.8904 -0.5131 32 1 2.0576 2.1094 -0.0009 33 1 1.0283 -2.6855 0.5145 34 1 2.7460 -3.1520 0.5154 35 1 2.7075 -2.8839 -1.8998 36 1 -0.2996 -5.0158 -2.6292 37 1 1.0417 -4.2466 -3.5832 38 1 0.7783 -6.9891 -0.8249 39 1 -0.1130 -7.4598 -2.2920 40 1 2.4943 -8.5340 -2.4513 41 1 2.1398 -11.2057 -2.4603 42 1 3.0314 -10.7357 -0.9932 43 1 0.8230 -15.8543 0.9131 44 1 3.3871 -4.9162 -2.4272 45 1 3.0294 -5.9661 -0.9882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488811280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:11 Heat of formation + Delta-G solvation = 12.096351 kcal Electronic energy + Delta-G solvation = -25289.211004 eV Core-core repulsion = 21435.578626 eV Total energy + Delta-G solvation = -3853.632377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.90609 -41.04557 -40.03271 -37.04636 -35.57600 -34.59438 -34.36453 -32.90552 -31.24809 -29.01385 -28.35863 -27.65487 -26.63629 -26.43537 -23.55819 -22.61144 -22.07304 -21.78023 -20.25032 -19.59711 -18.59347 -18.39188 -17.74914 -17.53929 -16.89217 -16.81176 -16.62517 -16.36699 -15.99645 -15.70142 -15.15529 -14.87555 -14.60469 -14.46738 -14.25376 -14.15113 -14.02519 -13.77115 -13.48848 -13.27176 -13.23175 -13.16837 -12.97101 -12.92195 -12.70758 -12.61912 -12.13077 -12.02415 -11.70744 -11.42176 -11.30378 -11.16613 -11.01640 -10.87010 -10.28281 -10.23008 -10.10358 -9.44859 -8.67623 -8.35711 -6.13797 0.59006 1.20302 1.26608 1.40867 1.46714 1.57939 1.60579 2.25175 2.29687 2.44415 2.98605 3.01847 3.30557 3.33811 3.50220 3.58160 3.67224 3.74153 3.93639 4.03499 4.05203 4.25363 4.27712 4.29312 4.39237 4.45414 4.50112 4.55474 4.68497 4.80044 4.83764 4.85972 4.86866 4.93326 5.00636 5.04622 5.09903 5.16702 5.31368 5.39820 5.41345 5.47797 5.94662 6.19228 6.25313 6.50680 7.05796 7.24067 7.32060 8.73824 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026272 B = 0.001503 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.514747 B =18625.247211 C =18861.100949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.199 4.199 3 C -0.057 4.057 4 O 0.088 5.912 5 N -0.396 5.396 6 C 0.007 3.993 7 C 0.139 3.861 8 N -0.667 5.667 9 C 0.064 3.936 10 H 0.096 0.904 11 C -0.106 4.106 12 C -0.112 4.112 13 H 0.101 0.899 14 C 0.138 3.862 15 N -0.711 5.711 16 C 0.532 3.468 17 O -0.567 6.567 18 C -0.130 4.130 19 S -0.152 6.152 20 C -0.547 4.547 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.257 1.257 26 H -0.274 1.274 27 H -0.273 1.273 28 C -0.159 4.159 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.257 0.743 33 H 0.102 0.898 34 H 0.040 0.960 35 H 0.345 0.655 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.416 0.584 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.096 0.904 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.080 34.745 -6.886 35.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.203 4.203 3 C -0.137 4.137 4 O 0.023 5.977 5 N -0.102 5.102 6 C -0.152 4.152 7 C 0.009 3.991 8 N -0.298 5.298 9 C -0.046 4.046 10 H 0.114 0.886 11 C -0.145 4.145 12 C -0.132 4.132 13 H 0.119 0.881 14 C 0.015 3.985 15 N -0.365 5.365 16 C 0.318 3.682 17 O -0.446 6.446 18 C -0.281 4.281 19 S 0.075 5.925 20 C -0.695 4.695 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.181 1.181 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.198 4.198 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.273 0.727 33 H 0.121 0.879 34 H 0.058 0.942 35 H 0.164 0.836 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.253 0.747 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.114 0.886 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.837 34.388 -5.803 34.922 hybrid contribution 2.024 -1.353 -0.413 2.469 sum 3.861 33.035 -6.216 33.836 Atomic orbital electron populations 1.20154 0.85738 1.04161 1.03164 1.21663 0.99905 0.90999 1.07719 1.26582 0.81744 1.02781 1.02639 1.84770 1.30642 1.14978 1.67346 1.73857 1.23517 0.92357 1.20493 1.23683 0.88765 0.99202 1.03520 1.20196 1.01409 0.86138 0.91316 1.60466 1.39649 1.18044 1.11660 1.23159 0.96961 0.85247 0.99185 0.88635 1.22990 0.99690 0.94022 0.97806 1.22343 0.97655 0.93589 0.99595 0.88058 1.21194 0.94617 0.82608 1.00111 1.45745 1.27372 1.09367 1.53988 1.20067 0.85040 0.84922 0.78169 1.90692 1.25737 1.85236 1.42927 1.23375 1.03111 0.95845 1.05783 1.85570 1.34577 1.04383 1.67965 1.23247 1.10229 0.97286 1.38702 0.89919 1.26130 0.97844 1.01265 0.93889 1.70193 1.26958 1.24733 1.32882 0.84895 0.77800 0.76809 0.78373 1.18061 1.19950 1.19866 1.23776 0.97193 0.98765 1.00116 0.90306 0.89304 0.91050 0.72726 0.87934 0.94218 0.83635 0.90783 0.88255 0.92511 0.91964 0.74725 0.87165 0.87331 0.91979 0.88550 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.37 71.23 0.74 0.19 16 2 C -0.20 -2.39 6.32 -19.74 -0.12 -2.52 16 3 C -0.06 -0.52 12.26 67.18 0.82 0.30 16 4 O 0.09 1.42 11.20 71.60 0.80 2.22 16 5 N -0.40 -7.96 12.07 -49.55 -0.60 -8.56 16 6 C 0.01 0.12 6.84 43.58 0.30 0.42 16 7 C 0.14 2.09 6.04 85.56 0.52 2.61 16 8 N -0.67 -9.18 6.60 -492.85 -3.25 -12.43 16 9 C 0.06 0.86 3.81 45.44 0.17 1.03 16 10 H 0.10 1.42 7.46 -2.39 -0.02 1.40 16 11 C -0.11 -1.29 7.47 31.12 0.23 -1.06 16 12 C -0.11 -1.51 3.94 -10.17 -0.04 -1.55 16 13 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 14 C 0.14 2.92 5.36 86.38 0.46 3.38 16 15 N -0.71 -17.48 5.56 -463.05 -2.57 -20.05 16 16 C 0.53 19.59 7.85 87.66 0.69 20.28 16 17 O -0.57 -26.40 15.86 -3.06 -0.05 -26.45 16 18 C -0.13 -5.15 6.16 71.23 0.44 -4.71 16 19 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 20 C -0.55 -31.37 9.50 67.95 0.65 -30.73 16 21 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 22 C 0.01 0.77 5.49 84.86 0.47 1.23 16 23 N -0.91 -56.17 13.22 21.65 0.29 -55.88 16 24 Si 1.00 43.73 29.55 68.60 2.03 45.75 16 25 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 28 C -0.16 -2.07 7.26 31.21 0.23 -1.85 16 29 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.26 -0.25 8.06 -2.91 -0.02 -0.27 16 33 H 0.10 1.35 8.13 -2.39 -0.02 1.33 16 34 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.34 4.86 8.20 -89.69 -0.74 4.13 16 36 H 0.07 0.95 8.10 -2.39 -0.02 0.93 16 37 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 1.34 7.39 -2.39 -0.02 1.32 16 39 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.42 7.40 8.47 -92.71 -0.79 6.61 16 41 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 42 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 43 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 44 H 0.10 1.07 7.83 -2.39 -0.02 1.05 16 45 H 0.06 0.96 8.11 -2.39 -0.02 0.94 16 Total: -1.00 -80.25 395.78 0.52 -79.73 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -0.50 Total: 18.30 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 5.55 Total: -12.96 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -6.14 Total: -96.92 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: 0.75 Total: -24.23 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -80.25 0.52 -79.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488811280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.825 kcal (2) G-P(sol) polarization free energy of solvation -80.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds