Wall clock time and date at job start Tue Mar 31 2020 22:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34032 * 126.77671 * 2 1 4 4 N 1.20916 * 111.56844 * 180.02562 * 3 2 1 5 5 C 1.30174 * 111.60336 * 359.74326 * 4 3 2 6 6 C 1.35451 * 126.77664 * 179.97438 * 2 1 3 7 7 C 1.50706 * 128.00522 * 359.96530 * 6 2 1 8 8 N 1.46898 * 109.46877 * 80.00115 * 7 6 2 9 9 C 1.46907 * 110.99938 * 179.97438 * 8 7 6 10 10 C 1.53780 * 113.61230 * 254.13761 * 9 8 7 11 11 C 1.53964 * 87.01587 * 220.04594 * 10 9 8 12 12 C 1.52998 * 113.66278 * 139.93458 * 11 10 9 13 13 N 1.46504 * 109.47004 * 87.44243 * 12 11 10 14 14 C 1.34776 * 119.99634 * 179.97438 * 13 12 11 15 15 O 1.21285 * 119.99963 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99814 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.47132 * 179.97438 * 16 14 13 18 18 C 1.76197 * 100.00123 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99847 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00108 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99919 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00057 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47131 * 359.97438 * 22 20 18 24 24 H 1.48507 * 109.47408 * 119.99494 * 22 20 18 25 25 H 1.48498 * 109.47441 * 239.99500 * 22 20 18 26 26 C 1.53775 * 113.61573 * 156.52732 * 9 8 7 27 27 H 1.09002 * 109.46970 * 269.99832 * 1 2 3 28 28 H 1.08991 * 109.47162 * 30.00293 * 1 2 3 29 29 H 1.09005 * 109.46817 * 150.00069 * 1 2 3 30 30 H 1.08007 * 126.79990 * 180.25185 * 5 4 3 31 31 H 1.09000 * 109.46628 * 199.99781 * 7 6 2 32 32 H 1.08997 * 109.47222 * 319.99630 * 7 6 2 33 33 H 1.00900 * 111.00359 * 303.94792 * 8 7 6 34 34 H 1.08999 * 112.84828 * 25.33059 * 9 8 7 35 35 H 1.08997 * 113.61294 * 334.56281 * 10 9 8 36 36 H 1.09002 * 113.61431 * 105.47245 * 10 9 8 37 37 H 1.09001 * 113.60923 * 270.80057 * 11 10 9 38 38 H 1.09008 * 109.46752 * 207.43841 * 12 11 10 39 39 H 1.09000 * 109.47534 * 327.43753 * 12 11 10 40 40 H 0.96993 * 119.99880 * 359.97438 * 13 12 11 41 41 H 1.08995 * 109.47039 * 299.99687 * 16 14 13 42 42 H 1.08996 * 109.47164 * 60.00310 * 16 14 13 43 43 H 0.96995 * 119.99754 * 179.97438 * 21 20 18 44 44 H 1.08996 * 113.61714 * 254.53114 * 26 9 8 45 45 H 1.08997 * 113.61547 * 25.43112 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4763 0.7564 -0.0005 5 6 3.6213 -0.5373 0.0045 6 6 2.3180 -1.0849 0.0005 7 6 1.9224 -2.5391 0.0019 8 7 1.5612 -2.9496 -1.3616 9 6 1.1697 -4.3650 -1.3990 10 6 2.2315 -5.2813 -2.0297 11 6 1.0683 -6.0277 -2.7082 12 6 1.3613 -6.4377 -4.1528 13 7 2.0224 -7.7450 -4.1649 14 6 2.3769 -8.3100 -5.3361 15 8 2.1481 -7.7364 -6.3799 16 6 3.0575 -9.6544 -5.3485 17 16 3.4026 -10.1402 -7.0577 18 6 4.1746 -11.7000 -6.7826 19 1 4.3027 -12.0689 -5.7757 20 6 4.6189 -12.4540 -7.8598 21 7 4.4632 -12.0041 -9.0870 22 14 5.4379 -14.1073 -7.5681 23 1 5.4924 -14.3823 -6.1098 24 1 4.6560 -15.1734 -8.2444 25 1 6.8171 -14.0805 -8.1181 26 6 0.2640 -4.7224 -2.5893 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 4.5528 -1.0839 0.0091 31 1 2.7591 -3.1429 0.3534 32 1 1.0678 -2.6826 0.6630 33 1 0.8305 -2.3621 -1.7345 34 1 0.7948 -4.7259 -0.4413 35 1 2.8896 -4.7686 -2.7312 36 1 2.7742 -5.8855 -1.3027 37 1 0.6656 -6.8448 -2.1096 38 1 0.4263 -6.4982 -4.7100 39 1 2.0128 -5.6966 -4.6159 40 1 2.2051 -8.2038 -3.3301 41 1 3.9927 -9.5934 -4.7920 42 1 2.4065 -10.3956 -4.8850 43 1 4.7741 -12.5309 -9.8398 44 1 -0.7792 -4.8760 -2.3135 45 1 0.3832 -4.0566 -3.4440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489375939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:38 Heat of formation + Delta-G solvation = 38.416988 kcal Electronic energy + Delta-G solvation = -25177.368232 eV Core-core repulsion = 21324.877202 eV Total energy + Delta-G solvation = -3852.491029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.34424 -39.98965 -38.78804 -36.43943 -34.37535 -33.60499 -32.97197 -32.41914 -29.88931 -28.67581 -27.23816 -26.19596 -25.67393 -25.35670 -23.03931 -21.92012 -21.10622 -20.50473 -19.62252 -18.04309 -17.82528 -17.62163 -16.59807 -16.24452 -16.08465 -15.54131 -15.26444 -15.20444 -14.80724 -14.79770 -14.51917 -13.89655 -13.84006 -13.82511 -13.35962 -13.23943 -13.10435 -12.74717 -12.67576 -12.57532 -12.32319 -11.99715 -11.70071 -11.61462 -11.17866 -11.06474 -11.00963 -10.94780 -10.75468 -10.72539 -10.54578 -9.79326 -9.68229 -9.35579 -9.06915 -8.93795 -8.81842 -8.21475 -6.48627 -6.20929 -3.91186 0.99518 1.81346 2.63655 3.06127 3.14033 3.22020 3.28948 3.33759 3.69147 3.76321 3.91123 4.09689 4.10774 4.21235 4.28962 4.34889 4.44834 4.51647 4.58715 4.78904 4.81251 4.93822 5.01830 5.07192 5.10571 5.14300 5.20642 5.24230 5.33705 5.38158 5.46685 5.57484 5.61803 5.64928 5.67888 5.87256 5.89224 5.93560 6.07753 6.15892 6.57116 6.68086 6.82011 7.60711 7.75508 7.84229 8.36299 8.65716 9.24514 10.86594 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026624 B = 0.001461 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.445729 B =19154.984290 C =19498.058259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.029 4.029 3 O 0.096 5.904 4 N -0.367 5.367 5 C 0.009 3.991 6 C -0.198 4.198 7 C 0.137 3.863 8 N -0.672 5.672 9 C 0.057 3.943 10 C -0.120 4.120 11 C -0.122 4.122 12 C 0.134 3.866 13 N -0.738 5.738 14 C 0.530 3.470 15 O -0.519 6.519 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.131 4.131 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.190 0.810 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.342 0.658 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.070 0.930 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.720 21.430 24.103 33.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.093 4.093 3 O 0.031 5.969 4 N -0.071 5.071 5 C -0.170 4.170 6 C -0.203 4.203 7 C 0.008 3.992 8 N -0.304 5.304 9 C -0.052 4.052 10 C -0.158 4.158 11 C -0.141 4.141 12 C 0.010 3.990 13 N -0.392 5.392 14 C 0.316 3.684 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.170 4.170 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.208 0.792 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.161 0.839 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.231 0.769 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.575 23.294 21.970 33.422 hybrid contribution -0.130 -2.710 2.220 3.506 sum -9.705 20.584 24.190 33.212 Atomic orbital electron populations 1.20347 0.84129 1.04648 1.04121 1.24329 0.96201 0.86067 1.02745 1.84815 1.11470 1.33045 1.67536 1.73904 0.96975 1.16960 1.19247 1.24932 0.99850 0.90036 1.02154 1.21002 0.92422 0.96884 1.09954 1.20153 1.00419 0.88557 0.90110 1.60638 1.46041 1.03247 1.20477 1.23050 0.96987 0.87804 0.97395 1.23204 0.96200 0.96641 0.99745 1.22657 0.98197 0.97008 0.96288 1.21240 0.97622 0.85049 0.95135 1.45986 1.63174 1.21157 1.08887 1.20304 0.77996 0.86867 0.83200 1.90703 1.53313 1.63690 1.31636 1.23527 1.02586 0.95903 1.08375 1.85405 1.77239 1.23349 0.97480 1.22915 1.44897 1.04827 0.95692 0.90885 1.24995 0.95594 0.98588 0.94436 1.70031 1.44286 1.37861 0.98106 0.86116 0.78916 0.82035 0.78410 1.19636 1.20572 1.20573 1.23176 0.98154 0.97085 0.98542 0.89341 0.89473 0.89444 0.79247 0.89413 0.93780 0.83935 0.90793 0.88813 0.91589 0.88630 0.91697 0.91419 0.76917 0.89266 0.89292 0.92247 0.91127 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.18 10.30 36.01 0.37 0.19 16 2 C -0.03 -0.18 7.49 -35.30 -0.26 -0.44 16 3 O 0.10 0.84 11.20 17.20 0.19 1.04 16 4 N -0.37 -3.69 12.07 30.35 0.37 -3.32 16 5 C 0.01 0.08 12.16 -17.06 -0.21 -0.13 16 6 C -0.20 -1.31 5.84 -104.42 -0.61 -1.92 16 7 C 0.14 0.70 5.87 -4.97 -0.03 0.67 16 8 N -0.67 -3.86 6.54 -107.13 -0.70 -4.56 16 9 C 0.06 0.31 4.12 -66.90 -0.28 0.04 16 10 C -0.12 -0.85 7.45 -25.82 -0.19 -1.04 16 11 C -0.12 -0.88 3.75 -89.71 -0.34 -1.21 16 12 C 0.13 1.49 5.51 -4.04 -0.02 1.46 16 13 N -0.74 -9.62 5.56 -60.29 -0.33 -9.95 16 14 C 0.53 9.92 7.85 -10.99 -0.09 9.84 16 15 O -0.52 -11.94 15.86 5.55 0.09 -11.85 16 16 C -0.15 -3.10 6.16 36.01 0.22 -2.87 16 17 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 18 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 19 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.26 13.22 55.49 0.73 -25.52 16 22 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C -0.13 -0.76 7.23 -25.92 -0.19 -0.95 16 27 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 28 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.09 0.11 7.51 -51.93 -0.39 -0.28 16 30 H 0.19 1.15 8.06 -52.48 -0.42 0.72 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.04 0.17 8.13 -51.93 -0.42 -0.25 16 33 H 0.34 1.69 8.01 -39.29 -0.31 1.37 16 34 H 0.07 0.35 7.88 -51.93 -0.41 -0.06 16 35 H 0.09 0.84 7.90 -51.93 -0.41 0.43 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 39 H 0.07 0.85 7.85 -51.93 -0.41 0.44 16 40 H 0.40 3.98 8.47 -40.82 -0.35 3.64 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -36.28 395.90 -9.24 -45.52 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.89 Total: -0.46 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.42 Total: -9.39 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.06 Total: -43.36 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.28 Total: -10.81 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.28 -9.24 -45.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489375939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.935 kcal (2) G-P(sol) polarization free energy of solvation -36.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds