Wall clock time and date at job start Tue Mar 31 2020 22:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.34481 * 126.16546 * 2 1 4 4 C 1.30257 * 108.69887 * 179.97438 * 3 2 1 5 5 O 1.33969 * 108.76120 * 359.73990 * 4 3 2 6 6 C 1.34326 * 126.16679 * 180.02562 * 2 1 3 7 7 C 1.50707 * 126.44120 * 359.97438 * 6 2 1 8 8 N 1.46892 * 109.47161 * 90.00215 * 7 6 2 9 9 C 1.47844 * 111.00213 * 55.05303 * 8 7 6 10 10 C 1.54904 * 104.79947 * 146.36358 * 9 8 7 11 11 C 1.55139 * 101.65129 * 322.93323 * 10 9 8 12 12 C 1.47446 * 111.00291 * 175.89538 * 8 7 6 13 13 H 1.09003 * 109.88618 * 117.17231 * 12 8 7 14 14 C 1.53006 * 109.88548 * 356.14912 * 12 8 7 15 15 N 1.46495 * 109.47060 * 176.31825 * 14 12 8 16 16 C 1.34778 * 120.00032 * 174.97578 * 15 14 12 17 17 O 1.21276 * 120.00038 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.99852 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.46895 * 179.97438 * 18 16 15 20 20 C 1.76206 * 100.00084 * 180.02562 * 19 18 16 21 21 H 1.07997 * 119.99723 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99705 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00500 * 0.02562 * 22 20 19 24 24 Si 1.86810 * 119.99361 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47017 * 60.00685 * 24 22 20 26 26 H 1.48504 * 109.46677 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47221 * 299.99848 * 24 22 20 28 28 H 1.08995 * 109.47296 * 270.00340 * 1 2 3 29 29 H 1.09005 * 109.47265 * 29.99713 * 1 2 3 30 30 H 1.09005 * 109.47644 * 149.99811 * 1 2 3 31 31 H 1.08003 * 125.61951 * 180.02562 * 4 3 2 32 32 H 1.08995 * 109.47028 * 329.99842 * 7 6 2 33 33 H 1.08997 * 109.46964 * 210.00510 * 7 6 2 34 34 H 1.09004 * 110.37728 * 265.19258 * 9 8 7 35 35 H 1.09000 * 110.37429 * 27.42088 * 9 8 7 36 36 H 1.08993 * 110.99017 * 81.02248 * 10 9 8 37 37 H 1.09007 * 110.99458 * 204.84086 * 10 9 8 38 38 H 1.09004 * 110.70451 * 277.26778 * 11 10 9 39 39 H 1.08998 * 110.71012 * 154.03987 * 11 10 9 40 40 H 1.08996 * 109.46805 * 56.31450 * 14 12 8 41 41 H 1.08999 * 109.46732 * 296.31914 * 14 12 8 42 42 H 0.97006 * 120.00134 * 354.97117 * 15 14 12 43 43 H 1.09000 * 109.47192 * 60.00677 * 18 16 15 44 44 H 1.08994 * 109.47397 * 300.00067 * 18 16 15 45 45 H 0.97001 * 120.00303 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5430 0.6947 0.0006 5 8 3.5733 -0.6446 0.0067 6 6 2.2996 -1.0844 -0.0005 7 6 1.8492 -2.5226 -0.0006 8 7 1.7023 -2.9896 -1.3855 9 6 2.9517 -2.7849 -2.1490 10 6 3.0100 -3.9749 -3.1390 11 6 2.4337 -5.1285 -2.2764 12 6 1.3568 -4.4224 -1.4262 13 1 0.3755 -4.5544 -1.8822 14 6 1.3532 -4.9974 -0.0083 15 7 0.9238 -6.3974 -0.0502 16 6 0.9411 -7.1415 1.0734 17 8 1.3117 -6.6519 2.1192 18 6 0.4989 -8.5815 1.0304 19 16 0.6370 -9.3046 2.6839 20 6 0.0741 -10.9407 2.3504 21 1 -0.2240 -11.2156 1.3494 22 6 0.0127 -11.8757 3.3744 23 7 0.3745 -11.5402 4.5946 24 14 -0.5847 -13.6100 3.0208 25 1 0.3009 -14.2422 2.0103 26 1 -0.5566 -14.4080 4.2729 27 1 -1.9739 -13.5582 2.4986 28 1 -0.3633 0.0001 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 4.4066 1.3434 0.0011 32 1 0.8915 -2.6034 0.5136 33 1 2.5900 -3.1354 0.5129 34 1 2.9140 -1.8407 -2.6925 35 1 3.8123 -2.8028 -1.4803 36 1 2.3830 -3.7885 -4.0108 37 1 4.0373 -4.1854 -3.4365 38 1 3.2076 -5.5572 -1.6396 39 1 1.9848 -5.8949 -2.9081 40 1 0.6657 -4.4249 0.6141 41 1 2.3579 -4.9378 0.4103 42 1 0.6270 -6.7889 -0.8867 43 1 1.1325 -9.1356 0.3379 44 1 -0.5372 -8.6335 0.6961 45 1 0.3320 -12.1937 5.3102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493079914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:07 Heat of formation + Delta-G solvation = -5.293685 kcal Electronic energy + Delta-G solvation = -26628.179806 eV Core-core repulsion = 22773.793340 eV Total energy + Delta-G solvation = -3854.386466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.64245 -40.27373 -38.80781 -35.44896 -34.60460 -33.76636 -32.45074 -31.31015 -30.66323 -28.77013 -28.08592 -25.69912 -25.58452 -24.94604 -22.57141 -21.97392 -21.05897 -20.43902 -19.97771 -17.89455 -17.50135 -17.18353 -16.76025 -16.38715 -15.94387 -15.41565 -15.34238 -15.29731 -14.82592 -14.70956 -14.09960 -13.94216 -13.78649 -13.50679 -13.24920 -13.19504 -13.11705 -12.66723 -12.59213 -12.42688 -12.21131 -11.88223 -11.84235 -11.54805 -11.28181 -11.23634 -11.07891 -11.06682 -11.05540 -10.80312 -10.78502 -9.85389 -9.51559 -9.11375 -9.08068 -8.96290 -8.69222 -8.27183 -6.52954 -6.23685 -3.94758 1.12696 2.36675 2.43960 2.93748 3.03104 3.21885 3.24697 3.27755 3.49778 3.78112 3.86508 4.11690 4.18333 4.23012 4.35356 4.48396 4.58415 4.76216 4.78582 4.92805 5.03996 5.08749 5.11411 5.13695 5.21950 5.32419 5.37906 5.44277 5.47095 5.49960 5.53353 5.59831 5.63046 5.67622 5.74396 5.80716 5.85023 5.90702 6.09177 6.09910 6.36821 6.44256 6.57008 7.42801 7.56929 7.61661 8.32770 8.53857 9.21463 10.83648 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021462 B = 0.002032 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.310744 B =13778.242466 C =14460.462458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.006 3.994 3 N -0.487 5.487 4 C 0.169 3.831 5 O -0.204 6.204 6 C -0.043 4.043 7 C 0.125 3.875 8 N -0.512 5.512 9 C 0.041 3.959 10 C -0.128 4.128 11 C -0.140 4.140 12 C 0.063 3.937 13 H 0.100 0.900 14 C 0.102 3.898 15 N -0.735 5.735 16 C 0.532 3.468 17 O -0.517 6.517 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.248 0.752 32 H 0.115 0.885 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.404 21.372 -16.837 27.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 N -0.217 5.217 4 C -0.057 4.057 5 O -0.090 6.090 6 C -0.096 4.096 7 C -0.002 4.002 8 N -0.237 5.237 9 C -0.086 4.086 10 C -0.166 4.166 11 C -0.178 4.178 12 C -0.045 4.045 13 H 0.118 0.882 14 C -0.023 4.023 15 N -0.391 5.391 16 C 0.318 3.682 17 O -0.391 6.391 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.264 0.736 32 H 0.133 0.867 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.496 23.031 -15.092 27.900 hybrid contribution 0.145 -2.767 -1.399 3.104 sum 4.641 20.264 -16.491 26.536 Atomic orbital electron populations 1.20164 0.86326 1.03757 1.02887 1.21512 0.98074 0.87271 1.04581 1.70376 1.01420 1.31865 1.18007 1.27983 0.97593 0.79324 1.00831 1.84436 1.30247 1.24651 1.69678 1.22939 0.80709 0.97532 1.08429 1.20868 1.02068 0.85939 0.91328 1.63990 1.32818 1.15852 1.10999 1.23090 0.90510 0.99315 0.95733 1.22685 1.01618 0.94157 0.98105 1.22916 0.98269 0.98136 0.98480 1.22719 1.00575 0.86348 0.94869 0.88231 1.21954 1.00849 0.82981 0.96514 1.45897 1.69737 1.11484 1.11944 1.20331 0.77001 0.87805 0.83018 1.90706 1.45449 1.72993 1.29946 1.23524 1.04095 0.94355 1.08396 1.85409 1.86502 1.09639 1.01820 1.22820 1.51106 0.96478 0.98045 0.90954 1.24996 0.94945 0.99214 0.94431 1.70004 1.44661 1.35271 1.00340 0.86223 0.79270 0.82182 0.77815 1.19936 1.20807 1.19916 0.90760 0.90726 0.89944 0.73613 0.86723 0.91605 0.90329 0.93057 0.90436 0.90576 0.90687 0.90100 0.91038 0.91280 0.76708 0.89212 0.89132 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.05 36.00 0.36 -0.24 16 2 C 0.01 0.06 7.11 -82.82 -0.59 -0.53 16 3 N -0.49 -5.26 11.29 -11.18 -0.13 -5.38 16 4 C 0.17 1.38 13.23 52.09 0.69 2.07 16 5 O -0.20 -1.99 10.38 5.37 0.06 -1.93 16 6 C -0.04 -0.43 5.84 -35.68 -0.21 -0.64 16 7 C 0.13 1.13 3.90 -4.98 -0.02 1.11 16 8 N -0.51 -4.28 5.26 -224.78 -1.18 -5.46 16 9 C 0.04 0.33 5.66 -2.30 -0.01 0.31 16 10 C -0.13 -0.85 7.08 -24.60 -0.17 -1.02 16 11 C -0.14 -1.00 6.16 -24.91 -0.15 -1.16 16 12 C 0.06 0.50 3.49 -66.72 -0.23 0.26 16 13 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 14 C 0.10 1.08 3.71 -4.04 -0.01 1.06 16 15 N -0.74 -8.92 5.35 -60.30 -0.32 -9.25 16 16 C 0.53 9.47 7.85 -10.99 -0.09 9.38 16 17 O -0.52 -11.38 15.86 5.56 0.09 -11.29 16 18 C -0.15 -2.98 6.16 36.00 0.22 -2.76 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 20 C -0.54 -15.09 9.50 30.94 0.29 -14.79 16 21 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.99 13.22 55.49 0.73 -25.25 16 24 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.60 7.79 -51.93 -0.40 0.20 16 31 H 0.25 0.77 8.06 -52.48 -0.42 0.35 16 32 H 0.11 0.96 6.55 -51.93 -0.34 0.62 16 33 H 0.07 0.64 6.35 -51.93 -0.33 0.31 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.45 7.46 -51.93 -0.39 0.06 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.63 7.79 -51.93 -0.40 0.23 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.79 6.46 -51.93 -0.34 0.45 16 41 H 0.07 0.83 6.79 -51.93 -0.35 0.48 16 42 H 0.40 3.66 8.38 -40.82 -0.34 3.31 16 43 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 44 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 383.05 15.07 5.77 5.77 Total: -1.00 -35.94 383.05 -8.91 -44.85 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.67 Total: 0.54 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -0.02 Total: -4.94 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -0.90 Total: -45.34 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.14 Total: -13.22 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.94 -8.91 -44.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493079914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.555 kcal (2) G-P(sol) polarization free energy of solvation -35.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds