Wall clock time and date at job start Tue Mar 31 2020 22:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.34481 * 126.16546 * 2 1 4 4 C 1.30257 * 108.69887 * 179.97438 * 3 2 1 5 5 O 1.33969 * 108.76120 * 359.73990 * 4 3 2 6 6 C 1.34326 * 126.16679 * 180.02562 * 2 1 3 7 7 C 1.50707 * 126.44120 * 359.97438 * 6 2 1 8 8 N 1.46892 * 109.47161 * 90.00215 * 7 6 2 9 9 C 1.47844 * 111.00213 * 55.05303 * 8 7 6 10 10 C 1.54904 * 104.79947 * 146.36358 * 9 8 7 11 11 C 1.55139 * 101.65129 * 322.93323 * 10 9 8 12 12 C 1.47446 * 111.00291 * 175.89538 * 8 7 6 13 13 H 1.09003 * 109.88618 * 117.17231 * 12 8 7 14 14 C 1.53006 * 109.88548 * 356.14912 * 12 8 7 15 15 N 1.46495 * 109.47060 * 176.31825 * 14 12 8 16 16 C 1.34778 * 120.00032 * 174.97578 * 15 14 12 17 17 O 1.21276 * 120.00038 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.99852 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.46895 * 179.97438 * 18 16 15 20 20 C 1.76206 * 100.00084 * 180.02562 * 19 18 16 21 21 H 1.07997 * 119.99723 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99705 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00500 * 0.02562 * 22 20 19 24 24 Si 1.86810 * 119.99361 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47017 * 60.00685 * 24 22 20 26 26 H 1.48504 * 109.46677 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47221 * 299.99848 * 24 22 20 28 28 H 1.08995 * 109.47296 * 270.00340 * 1 2 3 29 29 H 1.09005 * 109.47265 * 29.99713 * 1 2 3 30 30 H 1.09005 * 109.47644 * 149.99811 * 1 2 3 31 31 H 1.08003 * 125.61951 * 180.02562 * 4 3 2 32 32 H 1.08995 * 109.47028 * 329.99842 * 7 6 2 33 33 H 1.08997 * 109.46964 * 210.00510 * 7 6 2 34 34 H 1.09004 * 110.37728 * 265.19258 * 9 8 7 35 35 H 1.09000 * 110.37429 * 27.42088 * 9 8 7 36 36 H 1.08993 * 110.99017 * 81.02248 * 10 9 8 37 37 H 1.09007 * 110.99458 * 204.84086 * 10 9 8 38 38 H 1.09004 * 110.70451 * 277.26778 * 11 10 9 39 39 H 1.08998 * 110.71012 * 154.03987 * 11 10 9 40 40 H 1.08996 * 109.46805 * 56.31450 * 14 12 8 41 41 H 1.08999 * 109.46732 * 296.31914 * 14 12 8 42 42 H 0.97006 * 120.00134 * 354.97117 * 15 14 12 43 43 H 1.09000 * 109.47192 * 60.00677 * 18 16 15 44 44 H 1.08994 * 109.47397 * 300.00067 * 18 16 15 45 45 H 0.97001 * 120.00303 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5430 0.6947 0.0006 5 8 3.5733 -0.6446 0.0067 6 6 2.2996 -1.0844 -0.0005 7 6 1.8492 -2.5226 -0.0006 8 7 1.7023 -2.9896 -1.3855 9 6 2.9517 -2.7849 -2.1490 10 6 3.0100 -3.9749 -3.1390 11 6 2.4337 -5.1285 -2.2764 12 6 1.3568 -4.4224 -1.4262 13 1 0.3755 -4.5544 -1.8822 14 6 1.3532 -4.9974 -0.0083 15 7 0.9238 -6.3974 -0.0502 16 6 0.9411 -7.1415 1.0734 17 8 1.3117 -6.6519 2.1192 18 6 0.4989 -8.5815 1.0304 19 16 0.6370 -9.3046 2.6839 20 6 0.0741 -10.9407 2.3504 21 1 -0.2240 -11.2156 1.3494 22 6 0.0127 -11.8757 3.3744 23 7 0.3745 -11.5402 4.5946 24 14 -0.5847 -13.6100 3.0208 25 1 0.3009 -14.2422 2.0103 26 1 -0.5566 -14.4080 4.2729 27 1 -1.9739 -13.5582 2.4986 28 1 -0.3633 0.0001 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 4.4066 1.3434 0.0011 32 1 0.8915 -2.6034 0.5136 33 1 2.5900 -3.1354 0.5129 34 1 2.9140 -1.8407 -2.6925 35 1 3.8123 -2.8028 -1.4803 36 1 2.3830 -3.7885 -4.0108 37 1 4.0373 -4.1854 -3.4365 38 1 3.2076 -5.5572 -1.6396 39 1 1.9848 -5.8949 -2.9081 40 1 0.6657 -4.4249 0.6141 41 1 2.3579 -4.9378 0.4103 42 1 0.6270 -6.7889 -0.8867 43 1 1.1325 -9.1356 0.3379 44 1 -0.5372 -8.6335 0.6961 45 1 0.3320 -12.1937 5.3102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493079914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:07 Heat of formation + Delta-G solvation = -34.245169 kcal Electronic energy + Delta-G solvation = -26629.435236 eV Core-core repulsion = 22773.793340 eV Total energy + Delta-G solvation = -3855.641897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.34802 -41.16625 -40.01312 -36.16945 -35.77165 -34.57704 -34.43512 -32.16890 -31.64055 -29.95105 -28.76021 -27.67340 -26.36468 -25.89797 -23.27352 -22.65532 -21.76311 -21.69340 -20.78027 -19.77421 -18.28590 -18.05470 -17.65097 -17.51454 -16.87563 -16.85576 -16.49530 -16.38900 -16.00858 -15.82317 -15.43040 -14.92532 -14.68580 -14.62146 -14.33514 -14.15408 -13.89921 -13.88317 -13.54886 -13.31526 -13.16271 -13.04760 -12.86479 -12.83186 -12.62455 -12.49696 -12.12979 -12.01647 -11.97542 -11.74387 -11.65735 -11.53037 -11.12223 -11.01468 -10.27008 -10.16765 -9.78419 -9.40220 -8.66136 -8.33892 -6.12011 0.43169 1.27133 1.44546 1.47304 1.56684 1.60490 1.66674 1.78710 2.20573 2.28737 2.93066 3.00240 3.30719 3.33611 3.42770 3.57175 3.67214 3.80426 3.90335 4.00286 4.06687 4.14281 4.25925 4.30378 4.36942 4.45078 4.52528 4.52937 4.64394 4.72415 4.75562 4.82748 4.85910 4.96464 4.97670 5.03243 5.11875 5.15653 5.27583 5.37951 5.42501 5.44387 5.75290 5.79941 6.20342 6.48471 6.72770 7.07402 7.23252 8.74954 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021462 B = 0.002032 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.310744 B =13778.242466 C =14460.462458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.009 4.009 3 N -0.522 5.522 4 C 0.182 3.818 5 O -0.215 6.215 6 C -0.057 4.057 7 C 0.129 3.871 8 N -0.510 5.510 9 C 0.042 3.958 10 C -0.120 4.120 11 C -0.139 4.139 12 C 0.072 3.928 13 H 0.117 0.883 14 C 0.105 3.895 15 N -0.706 5.706 16 C 0.535 3.465 17 O -0.567 6.567 18 C -0.129 4.129 19 S -0.154 6.154 20 C -0.545 4.545 21 H 0.084 0.916 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 0.998 3.002 25 H -0.262 1.262 26 H -0.280 1.280 27 H -0.261 1.261 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.291 0.709 32 H 0.119 0.881 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.039 0.961 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.418 0.582 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.882 21.004 -19.675 29.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.128 4.128 3 N -0.251 5.251 4 C -0.044 4.044 5 O -0.102 6.102 6 C -0.109 4.109 7 C 0.002 3.998 8 N -0.235 5.235 9 C -0.086 4.086 10 C -0.158 4.158 11 C -0.177 4.177 12 C -0.036 4.036 13 H 0.135 0.865 14 C -0.020 4.020 15 N -0.361 5.361 16 C 0.320 3.680 17 O -0.445 6.445 18 C -0.280 4.280 19 S 0.073 5.927 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.206 1.206 27 H -0.186 1.186 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.306 0.694 32 H 0.137 0.863 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.118 0.882 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.256 0.744 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.955 22.683 -18.002 29.227 hybrid contribution 0.373 -2.477 -0.592 2.574 sum 4.328 20.206 -18.595 27.799 Atomic orbital electron populations 1.20204 0.85263 1.04147 1.03295 1.21874 0.99048 0.87389 1.04535 1.70390 1.02579 1.32427 1.19749 1.29006 0.98231 0.79069 0.98130 1.84443 1.30268 1.25506 1.69940 1.23036 0.80848 0.97780 1.09263 1.20815 1.01810 0.85528 0.91653 1.64049 1.33028 1.15880 1.10508 1.23072 0.89871 0.99879 0.95762 1.22669 1.02355 0.92963 0.97824 1.22930 0.97671 0.98684 0.98414 1.22733 1.01821 0.86019 0.92994 0.86493 1.22041 0.99794 0.81675 0.98492 1.45571 1.67728 1.11727 1.11067 1.20069 0.76797 0.87452 0.83650 1.90699 1.48007 1.73677 1.32095 1.23361 1.06021 0.95180 1.03418 1.85607 1.87006 1.11123 1.08998 1.23172 1.50851 0.96607 0.98681 0.89767 1.26137 0.94885 1.04181 0.94057 1.70178 1.46140 1.36938 1.01572 0.85010 0.79198 0.75957 0.77873 1.18609 1.20565 1.18595 0.90309 0.90635 0.89184 0.69444 0.86347 0.92874 0.90757 0.94224 0.89410 0.89796 0.92068 0.88179 0.91343 0.92856 0.74415 0.87076 0.86971 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.05 71.23 0.72 -0.43 16 2 C -0.01 -0.18 7.11 41.26 0.29 0.11 16 3 N -0.52 -10.99 11.29 -304.07 -3.43 -14.43 16 4 C 0.18 2.77 13.23 130.48 1.73 4.50 16 5 O -0.21 -4.11 10.38 -3.72 -0.04 -4.15 16 6 C -0.06 -1.12 5.84 24.79 0.14 -0.98 16 7 C 0.13 2.32 3.90 85.56 0.33 2.65 16 8 N -0.51 -7.88 5.26 -865.08 -4.55 -12.43 16 9 C 0.04 0.62 5.66 86.77 0.49 1.11 16 10 C -0.12 -1.31 7.08 31.98 0.23 -1.09 16 11 C -0.14 -1.64 6.16 31.77 0.20 -1.44 16 12 C 0.07 0.99 3.49 45.26 0.16 1.14 16 13 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 14 C 0.10 2.10 3.71 86.38 0.32 2.42 16 15 N -0.71 -15.77 5.35 -463.07 -2.48 -18.24 16 16 C 0.53 18.63 7.85 87.66 0.69 19.32 16 17 O -0.57 -25.47 15.86 -3.02 -0.05 -25.51 16 18 C -0.13 -4.85 6.16 71.23 0.44 -4.41 16 19 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 20 C -0.55 -30.64 9.50 67.95 0.65 -30.00 16 21 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 22 C 0.01 0.68 5.49 84.86 0.47 1.15 16 23 N -0.91 -55.74 13.22 21.65 0.29 -55.46 16 24 Si 1.00 43.03 29.55 68.60 2.03 45.05 16 25 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 26 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.15 8.14 -2.38 -0.02 1.14 16 30 H 0.09 1.24 7.79 -2.38 -0.02 1.22 16 31 H 0.29 1.15 8.06 -2.91 -0.02 1.13 16 32 H 0.12 1.97 6.55 -2.39 -0.02 1.95 16 33 H 0.05 1.08 6.35 -2.39 -0.02 1.06 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.04 0.68 7.46 -2.39 -0.02 0.66 16 36 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.06 0.92 7.79 -2.38 -0.02 0.91 16 39 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 1.47 6.46 -2.39 -0.02 1.45 16 41 H 0.05 1.29 6.79 -2.39 -0.02 1.27 16 42 H 0.42 6.25 8.38 -92.70 -0.78 5.47 16 43 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 44 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 45 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -80.81 383.05 -2.32 -83.13 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.23 Total: 17.59 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 6.84 Total: -5.95 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -10.18 Total: -100.55 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.09 Total: -29.67 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -80.81 -2.32 -83.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493079914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.883 kcal (2) G-P(sol) polarization free energy of solvation -80.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds