Wall clock time and date at job start Tue Mar 31 2020 22:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 S 1.75513 * 124.71315 * 2 1 4 4 C 1.70443 * 92.44468 * 179.84015 * 3 2 1 5 5 C 1.36004 * 110.81798 * 0.34856 * 4 3 2 6 6 C 1.47192 * 123.46153 * 179.86117 * 5 4 3 7 7 O 1.21640 * 120.00546 * 138.94123 * 6 5 4 8 8 N 1.34783 * 119.99838 * 318.66913 * 6 5 4 9 9 C 1.46496 * 119.99704 * 4.57632 * 8 6 5 10 10 C 1.46492 * 120.00112 * 184.57714 * 8 6 5 11 11 C 1.53005 * 109.47453 * 89.99776 * 10 8 6 12 12 N 1.46894 * 109.47512 * 179.97438 * 11 10 8 13 13 C 1.46900 * 111.00314 * 179.97438 * 12 11 10 14 14 C 1.50693 * 109.47323 * 180.02562 * 13 12 11 15 15 O 1.21297 * 120.00157 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00196 * 180.02562 * 14 13 12 17 17 C 1.37093 * 120.00206 * 179.97438 * 16 14 13 18 18 H 1.08003 * 120.00183 * 359.97438 * 17 16 14 19 19 C 1.38950 * 119.99850 * 180.02562 * 17 16 14 20 20 N 1.31403 * 120.00272 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99836 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47220 * 60.00222 * 21 19 17 23 23 H 1.48500 * 109.47215 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47355 * 300.00111 * 21 19 17 25 25 C 1.32773 * 124.71502 * 180.02562 * 2 1 3 26 26 C 1.50695 * 123.45636 * 359.96222 * 25 2 1 27 27 H 1.08999 * 109.46627 * 269.95751 * 1 2 3 28 28 H 1.08993 * 109.47167 * 29.95888 * 1 2 3 29 29 H 1.09003 * 109.47164 * 149.96299 * 1 2 3 30 30 H 1.07997 * 124.58972 * 180.22689 * 4 3 2 31 31 H 1.09003 * 109.47670 * 84.39651 * 9 8 6 32 32 H 1.09006 * 109.47273 * 204.39826 * 9 8 6 33 33 H 1.09001 * 109.47285 * 324.39216 * 9 8 6 34 34 H 1.08997 * 109.47243 * 209.99999 * 10 8 6 35 35 H 1.09005 * 109.47059 * 330.00009 * 10 8 6 36 36 H 1.08997 * 109.47078 * 300.00324 * 11 10 8 37 37 H 1.08997 * 109.47030 * 59.99870 * 11 10 8 38 38 H 1.00903 * 110.99639 * 56.04559 * 12 11 10 39 39 H 1.09003 * 109.47183 * 300.00619 * 13 12 11 40 40 H 1.09004 * 109.46806 * 60.00032 * 13 12 11 41 41 H 0.97000 * 119.99638 * 0.02562 * 16 14 13 42 42 H 0.97006 * 120.00537 * 180.02562 * 20 19 17 43 43 H 1.09007 * 109.47227 * 269.99900 * 26 25 2 44 44 H 1.08997 * 109.47466 * 29.99739 * 26 25 2 45 45 H 1.08998 * 109.47386 * 150.00107 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5065 1.4427 0.0000 4 6 3.9476 0.5328 0.0048 5 6 3.6777 -0.8002 -0.0015 6 6 4.7201 -1.8394 -0.0024 7 8 4.5879 -2.8341 0.6851 8 7 5.8186 -1.6913 -0.7692 9 6 6.0234 -0.4526 -1.5240 10 6 6.8077 -2.7690 -0.8478 11 6 6.4452 -3.7113 -1.9974 12 7 7.4373 -4.7916 -2.0767 13 6 7.1203 -5.7184 -3.1715 14 6 8.1572 -6.8107 -3.2211 15 8 9.0708 -6.8165 -2.4232 16 7 8.0701 -7.7808 -4.1527 17 6 9.0137 -8.7743 -4.1981 18 1 9.8271 -8.7795 -3.4876 19 6 8.9241 -9.7741 -5.1589 20 7 7.9353 -9.7671 -6.0243 21 14 10.2102 -11.1275 -5.2213 22 1 10.2136 -11.8669 -3.9334 23 1 9.8906 -12.0634 -6.3290 24 1 11.5491 -10.5278 -5.4513 25 6 2.2631 -1.0914 -0.0005 26 6 1.7028 -2.4903 -0.0003 27 1 -0.3632 -0.0008 1.0277 28 1 -0.3633 0.8903 -0.5132 29 1 -0.3633 -0.8897 -0.5144 30 1 4.9407 0.9572 0.0099 31 1 6.4891 0.2930 -0.8795 32 1 6.6714 -0.6503 -2.3780 33 1 5.0620 -0.0787 -1.8764 34 1 7.7955 -2.3434 -1.0246 35 1 6.8143 -3.3253 0.0896 36 1 5.4574 -4.1369 -1.8206 37 1 6.4386 -3.1551 -2.9348 38 1 7.5090 -5.2819 -1.1977 39 1 6.1375 -6.1582 -3.0022 40 1 7.1177 -5.1762 -4.1171 41 1 7.3401 -7.7756 -4.7915 42 1 7.8725 -10.4653 -6.6948 43 1 1.5682 -2.8277 1.0275 44 1 0.7412 -2.4967 -0.5135 45 1 2.3935 -3.1585 -0.5145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493555476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:02 Heat of formation + Delta-G solvation = -38.194851 kcal Electronic energy + Delta-G solvation = -26105.870005 eV Core-core repulsion = 22250.056837 eV Total energy + Delta-G solvation = -3855.813168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -40.49754 -38.31643 -37.91185 -36.32836 -35.06164 -33.81839 -32.82126 -31.21451 -29.92552 -29.63915 -27.24302 -26.51352 -25.64057 -24.45520 -23.44589 -22.00795 -19.92658 -19.18302 -18.81597 -17.86578 -17.70899 -17.03290 -16.29901 -16.13667 -15.53271 -15.43317 -15.09095 -14.67405 -14.48698 -14.28335 -13.91535 -13.71905 -13.52677 -13.44133 -13.23361 -13.09941 -12.98218 -12.75151 -12.67638 -12.39430 -12.25977 -12.07600 -11.99453 -11.88374 -11.50188 -11.48024 -11.23553 -11.10013 -10.94919 -10.42440 -10.19461 -10.08336 -9.47902 -9.00601 -8.98027 -8.67116 -8.43585 -8.06395 -7.93895 -6.39424 -3.80233 0.45008 1.14046 1.51866 1.71617 2.57700 2.95644 3.22071 3.27386 3.32109 3.93317 4.13580 4.22792 4.33243 4.46492 4.64269 4.80212 4.85305 4.90023 5.01016 5.02127 5.07755 5.19181 5.21054 5.22556 5.29520 5.34903 5.38884 5.45913 5.51112 5.52663 5.65037 5.76350 5.86588 5.90595 5.93349 6.00825 6.15575 6.23230 6.31972 7.08791 7.19293 7.57175 7.65400 7.92691 8.08318 8.63646 9.19929 9.56519 10.08136 10.78277 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024632 B = 0.001766 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.479471 B =15853.581054 C =16408.715952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.206 4.206 3 S 0.174 5.826 4 C -0.218 4.218 5 C -0.140 4.140 6 C 0.576 3.424 7 O -0.525 6.525 8 N -0.608 5.608 9 C 0.073 3.927 10 C 0.117 3.883 11 C 0.046 3.954 12 N -0.666 5.666 13 C 0.053 3.947 14 C 0.441 3.559 15 O -0.583 6.583 16 N -0.564 5.564 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.932 3.068 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.062 4.062 26 C -0.092 4.092 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.174 0.826 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.030 0.970 37 H 0.071 0.929 38 H 0.351 0.649 39 H 0.044 0.956 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.003 25.770 8.904 31.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.323 4.323 3 S 0.442 5.558 4 C -0.356 4.356 5 C -0.158 4.158 6 C 0.363 3.637 7 O -0.402 6.402 8 N -0.342 5.342 9 C -0.070 4.070 10 C -0.006 4.006 11 C -0.084 4.084 12 N -0.299 5.299 13 C -0.080 4.080 14 C 0.227 3.773 15 O -0.467 6.467 16 N -0.200 5.200 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.759 3.241 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.072 4.072 26 C -0.150 4.150 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.191 0.809 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.048 0.952 37 H 0.089 0.911 38 H 0.171 0.829 39 H 0.062 0.938 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.343 27.038 9.264 32.439 hybrid contribution -0.046 -2.521 -0.281 2.537 sum -15.388 24.518 8.983 30.309 Atomic orbital electron populations 1.20345 0.87430 1.03267 1.02890 1.24119 1.00397 0.95483 1.12282 1.82980 0.93765 1.08371 1.70714 1.25745 1.04770 0.97277 1.07804 1.20070 0.93762 0.92721 1.09256 1.17723 0.80931 0.85612 0.79467 1.90824 1.77729 1.30481 1.41139 1.47683 1.22232 1.17594 1.46647 1.22057 1.02687 0.85904 0.96378 1.21459 0.90980 0.88241 0.99875 1.22255 0.93778 0.93652 0.98754 1.60027 1.47458 1.13632 1.08811 1.21654 0.96819 0.93763 0.95790 1.19791 0.88397 0.84420 0.84732 1.90522 1.36280 1.77318 1.42580 1.41851 1.26262 1.22772 1.29142 1.19661 1.06007 1.02103 1.15137 0.87950 1.25266 0.97946 0.99034 0.95743 1.69603 1.31162 1.35169 1.18435 0.85907 0.80420 0.80026 0.77792 1.19909 1.20996 1.19893 1.19675 0.90139 0.96656 1.00758 1.20493 1.00514 0.90999 1.03035 0.90645 0.91289 0.90253 0.80915 0.92503 0.90229 0.90720 0.89133 0.89463 0.95181 0.91103 0.82944 0.93819 0.89628 0.77455 0.91836 0.90474 0.91367 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.04 36.00 0.36 -0.06 16 2 C -0.21 -1.61 6.44 -36.18 -0.23 -1.84 16 3 S 0.17 1.12 23.00 -107.50 -2.47 -1.35 16 4 C -0.22 -1.68 8.59 29.93 0.26 -1.42 16 5 C -0.14 -1.46 5.21 -104.63 -0.55 -2.00 16 6 C 0.58 7.29 7.03 -12.62 -0.09 7.20 16 7 O -0.53 -8.50 15.50 5.24 0.08 -8.41 16 8 N -0.61 -6.47 2.87 -182.93 -0.53 -7.00 16 9 C 0.07 0.51 9.01 59.84 0.54 1.05 16 10 C 0.12 1.40 5.67 -4.04 -0.02 1.37 16 11 C 0.05 0.62 6.01 -3.82 -0.02 0.60 16 12 N -0.67 -11.27 6.13 -115.06 -0.70 -11.98 16 13 C 0.05 0.97 6.17 -4.98 -0.03 0.94 16 14 C 0.44 10.72 7.82 -10.99 -0.09 10.63 16 15 O -0.58 -16.19 15.78 5.54 0.09 -16.10 16 16 N -0.56 -14.61 5.29 -10.96 -0.06 -14.67 16 17 C -0.30 -8.50 9.68 -14.94 -0.14 -8.65 16 18 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.86 13.05 55.50 0.72 -24.14 16 21 Si 0.93 21.34 29.55 -169.99 -5.02 16.32 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 C -0.06 -0.61 6.00 -104.06 -0.62 -1.23 16 26 C -0.09 -0.88 9.21 36.00 0.33 -0.55 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.38 6.66 -51.93 -0.35 0.03 16 30 H 0.17 0.98 6.09 -52.49 -0.32 0.66 16 31 H 0.06 0.30 7.10 -51.93 -0.37 -0.07 16 32 H 0.08 0.50 8.03 -51.93 -0.42 0.08 16 33 H 0.07 0.48 6.05 -51.93 -0.31 0.16 16 34 H 0.09 0.98 8.07 -51.93 -0.42 0.56 16 35 H 0.09 1.18 7.37 -51.93 -0.38 0.80 16 36 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.35 6.23 8.43 -39.29 -0.33 5.90 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.39 9.71 7.90 -40.82 -0.32 9.38 16 42 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.50 6.64 -51.93 -0.34 0.15 16 45 H 0.07 0.81 7.29 -51.93 -0.38 0.43 16 LS Contribution 386.96 15.07 5.83 5.83 Total: -1.00 -34.26 386.96 -8.88 -43.14 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -6.41 Total: 11.84 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -0.41 Total: 6.52 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.56 Total: -57.78 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: 0.17 Total: -24.52 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.47 Total: -1.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.26 -8.88 -43.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493555476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.949 kcal (2) G-P(sol) polarization free energy of solvation -34.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds