Wall clock time and date at job start Tue Mar 31 2020 22:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 S 1.75513 * 124.71315 * 2 1 4 4 C 1.70443 * 92.44468 * 179.84015 * 3 2 1 5 5 C 1.36004 * 110.81798 * 0.34856 * 4 3 2 6 6 C 1.47192 * 123.46153 * 179.86117 * 5 4 3 7 7 O 1.21640 * 120.00546 * 138.94123 * 6 5 4 8 8 N 1.34783 * 119.99838 * 318.66913 * 6 5 4 9 9 C 1.46496 * 119.99704 * 4.57632 * 8 6 5 10 10 C 1.46492 * 120.00112 * 184.57714 * 8 6 5 11 11 C 1.53005 * 109.47453 * 89.99776 * 10 8 6 12 12 N 1.46894 * 109.47512 * 179.97438 * 11 10 8 13 13 C 1.46900 * 111.00314 * 179.97438 * 12 11 10 14 14 C 1.50693 * 109.47323 * 180.02562 * 13 12 11 15 15 O 1.21297 * 120.00157 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00196 * 180.02562 * 14 13 12 17 17 C 1.37093 * 120.00206 * 179.97438 * 16 14 13 18 18 H 1.08003 * 120.00183 * 359.97438 * 17 16 14 19 19 C 1.38950 * 119.99850 * 180.02562 * 17 16 14 20 20 N 1.31403 * 120.00272 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99836 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47220 * 60.00222 * 21 19 17 23 23 H 1.48500 * 109.47215 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47355 * 300.00111 * 21 19 17 25 25 C 1.32773 * 124.71502 * 180.02562 * 2 1 3 26 26 C 1.50695 * 123.45636 * 359.96222 * 25 2 1 27 27 H 1.08999 * 109.46627 * 269.95751 * 1 2 3 28 28 H 1.08993 * 109.47167 * 29.95888 * 1 2 3 29 29 H 1.09003 * 109.47164 * 149.96299 * 1 2 3 30 30 H 1.07997 * 124.58972 * 180.22689 * 4 3 2 31 31 H 1.09003 * 109.47670 * 84.39651 * 9 8 6 32 32 H 1.09006 * 109.47273 * 204.39826 * 9 8 6 33 33 H 1.09001 * 109.47285 * 324.39216 * 9 8 6 34 34 H 1.08997 * 109.47243 * 209.99999 * 10 8 6 35 35 H 1.09005 * 109.47059 * 330.00009 * 10 8 6 36 36 H 1.08997 * 109.47078 * 300.00324 * 11 10 8 37 37 H 1.08997 * 109.47030 * 59.99870 * 11 10 8 38 38 H 1.00903 * 110.99639 * 56.04559 * 12 11 10 39 39 H 1.09003 * 109.47183 * 300.00619 * 13 12 11 40 40 H 1.09004 * 109.46806 * 60.00032 * 13 12 11 41 41 H 0.97000 * 119.99638 * 0.02562 * 16 14 13 42 42 H 0.97006 * 120.00537 * 180.02562 * 20 19 17 43 43 H 1.09007 * 109.47227 * 269.99900 * 26 25 2 44 44 H 1.08997 * 109.47466 * 29.99739 * 26 25 2 45 45 H 1.08998 * 109.47386 * 150.00107 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5065 1.4427 0.0000 4 6 3.9476 0.5328 0.0048 5 6 3.6777 -0.8002 -0.0015 6 6 4.7201 -1.8394 -0.0024 7 8 4.5879 -2.8341 0.6851 8 7 5.8186 -1.6913 -0.7692 9 6 6.0234 -0.4526 -1.5240 10 6 6.8077 -2.7690 -0.8478 11 6 6.4452 -3.7113 -1.9974 12 7 7.4373 -4.7916 -2.0767 13 6 7.1203 -5.7184 -3.1715 14 6 8.1572 -6.8107 -3.2211 15 8 9.0708 -6.8165 -2.4232 16 7 8.0701 -7.7808 -4.1527 17 6 9.0137 -8.7743 -4.1981 18 1 9.8271 -8.7795 -3.4876 19 6 8.9241 -9.7741 -5.1589 20 7 7.9353 -9.7671 -6.0243 21 14 10.2102 -11.1275 -5.2213 22 1 10.2136 -11.8669 -3.9334 23 1 9.8906 -12.0634 -6.3290 24 1 11.5491 -10.5278 -5.4513 25 6 2.2631 -1.0914 -0.0005 26 6 1.7028 -2.4903 -0.0003 27 1 -0.3632 -0.0008 1.0277 28 1 -0.3633 0.8903 -0.5132 29 1 -0.3633 -0.8897 -0.5144 30 1 4.9407 0.9572 0.0099 31 1 6.4891 0.2930 -0.8795 32 1 6.6714 -0.6503 -2.3780 33 1 5.0620 -0.0787 -1.8764 34 1 7.7955 -2.3434 -1.0246 35 1 6.8143 -3.3253 0.0896 36 1 5.4574 -4.1369 -1.8206 37 1 6.4386 -3.1551 -2.9348 38 1 7.5090 -5.2819 -1.1977 39 1 6.1375 -6.1582 -3.0022 40 1 7.1177 -5.1762 -4.1171 41 1 7.3401 -7.7756 -4.7915 42 1 7.8725 -10.4653 -6.6948 43 1 1.5682 -2.8277 1.0275 44 1 0.7412 -2.4967 -0.5135 45 1 2.3935 -3.1585 -0.5145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493555476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:00 Heat of formation + Delta-G solvation = -62.720033 kcal Electronic energy + Delta-G solvation = -26106.933497 eV Core-core repulsion = 22250.056837 eV Total energy + Delta-G solvation = -3856.876659 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -41.34496 -40.18559 -38.67745 -37.46440 -36.32983 -35.76464 -33.51713 -33.27063 -30.95482 -30.37779 -28.20403 -27.70367 -26.55634 -25.81682 -24.57922 -23.04359 -21.21347 -20.58237 -19.92141 -19.48542 -18.38361 -17.99663 -17.79874 -17.09466 -16.97415 -16.51004 -16.40215 -15.95859 -15.68630 -15.38766 -15.21424 -15.00680 -14.79914 -14.36979 -14.11692 -13.91161 -13.86470 -13.65271 -13.54445 -13.44495 -13.34572 -13.23238 -13.00129 -12.89009 -12.77917 -12.64858 -12.54791 -12.44575 -12.12942 -12.12431 -11.81227 -11.51988 -11.00376 -10.41836 -10.04114 -9.82414 -9.59235 -9.47749 -9.24551 -8.47924 -5.97181 -0.17128 0.59176 0.89455 1.00255 1.39300 1.41128 1.52409 1.72291 2.01746 2.13255 2.28950 2.93940 3.18673 3.47247 3.63683 3.70516 3.95172 4.06344 4.11050 4.22244 4.27328 4.30644 4.40234 4.43769 4.45357 4.53092 4.56619 4.61678 4.64149 4.73907 4.81249 4.83775 4.85263 4.91653 4.95651 5.06167 5.31425 5.38397 5.40028 5.50642 5.79881 6.03078 6.23132 6.27526 6.57547 7.03662 7.10138 7.52926 8.08034 8.69232 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024632 B = 0.001766 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.479471 B =15853.581054 C =16408.715952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.209 4.209 3 S 0.233 5.767 4 C -0.212 4.212 5 C -0.171 4.171 6 C 0.571 3.429 7 O -0.576 6.576 8 N -0.605 5.605 9 C 0.066 3.934 10 C 0.123 3.877 11 C 0.056 3.944 12 N -0.674 5.674 13 C 0.066 3.934 14 C 0.437 3.563 15 O -0.622 6.622 16 N -0.571 5.571 17 C -0.336 4.336 18 H 0.080 0.920 19 C -0.014 4.014 20 N -0.920 5.920 21 Si 0.995 3.005 22 H -0.272 1.272 23 H -0.269 1.269 24 H -0.271 1.271 25 C -0.092 4.092 26 C -0.087 4.087 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.194 0.806 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.017 0.983 37 H 0.088 0.912 38 H 0.343 0.657 39 H 0.060 0.940 40 H 0.109 0.891 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.757 28.149 8.014 33.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.326 4.326 3 S 0.501 5.499 4 C -0.349 4.349 5 C -0.189 4.189 6 C 0.359 3.641 7 O -0.456 6.456 8 N -0.337 5.337 9 C -0.075 4.075 10 C 0.000 4.000 11 C -0.074 4.074 12 N -0.306 5.306 13 C -0.066 4.066 14 C 0.225 3.775 15 O -0.509 6.509 16 N -0.209 5.209 17 C -0.466 4.466 18 H 0.098 0.902 19 C -0.213 4.213 20 N -0.560 5.560 21 Si 0.819 3.181 22 H -0.197 1.197 23 H -0.194 1.194 24 H -0.196 1.196 25 C -0.102 4.102 26 C -0.145 4.145 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.211 0.789 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.124 0.876 35 H 0.083 0.917 36 H 0.036 0.964 37 H 0.106 0.894 38 H 0.162 0.838 39 H 0.078 0.922 40 H 0.127 0.873 41 H 0.230 0.770 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.106 0.894 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.119 29.468 8.336 34.608 hybrid contribution 0.141 -3.119 0.006 3.122 sum -15.978 26.349 8.342 31.924 Atomic orbital electron populations 1.20467 0.85767 1.04271 1.03702 1.24494 1.01788 0.95759 1.10587 1.82807 0.91913 1.06388 1.68756 1.26045 1.06679 0.96510 1.05709 1.19965 0.93394 0.93159 1.12413 1.18179 0.81542 0.85524 0.78876 1.90784 1.78800 1.32673 1.43386 1.47760 1.21301 1.18265 1.46332 1.22332 1.03665 0.84685 0.96853 1.21299 0.92068 0.88502 0.98162 1.22245 0.92169 0.92794 1.00182 1.60055 1.48849 1.13754 1.07973 1.21527 0.95168 0.92449 0.97496 1.20781 0.88752 0.84780 0.83213 1.90490 1.38255 1.78323 1.43790 1.41916 1.26135 1.22989 1.29819 1.19654 1.06800 1.04093 1.16026 0.90228 1.26081 0.99820 1.00624 0.94824 1.69666 1.32030 1.35858 1.18494 0.84959 0.77841 0.77223 0.78124 1.19740 1.19381 1.19599 1.19753 0.90442 0.97081 1.02934 1.20404 1.00824 0.91029 1.02285 0.89841 0.89623 0.89957 0.78891 0.90214 0.89109 0.89896 0.87559 0.91682 0.96427 0.89363 0.83839 0.92211 0.87302 0.76951 0.91222 0.91511 0.89355 0.93765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.04 71.23 0.72 0.01 16 2 C -0.21 -2.91 6.44 24.51 0.16 -2.75 16 3 S 0.23 2.32 23.00 -56.49 -1.30 1.02 16 4 C -0.21 -2.79 8.59 67.30 0.58 -2.21 16 5 C -0.17 -3.49 5.21 -19.87 -0.10 -3.59 16 6 C 0.57 14.79 7.03 86.59 0.61 15.40 16 7 O -0.58 -19.93 15.50 -4.16 -0.06 -19.99 16 8 N -0.60 -12.51 2.87 -850.92 -2.44 -14.95 16 9 C 0.07 0.76 9.01 127.77 1.15 1.91 16 10 C 0.12 2.92 5.67 86.38 0.49 3.41 16 11 C 0.06 1.49 6.01 86.31 0.52 2.01 16 12 N -0.67 -22.75 6.13 -517.95 -3.17 -25.93 16 13 C 0.07 2.41 6.17 85.55 0.53 2.93 16 14 C 0.44 21.59 7.82 87.65 0.69 22.27 16 15 O -0.62 -35.52 15.78 -3.08 -0.05 -35.57 16 16 N -0.57 -30.16 5.29 -306.98 -1.62 -31.78 16 17 C -0.34 -19.50 9.68 84.04 0.81 -18.69 16 18 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 19 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 20 N -0.92 -50.32 13.05 21.66 0.28 -50.04 16 21 Si 1.00 43.53 29.55 68.60 2.03 45.56 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 C -0.09 -1.79 6.00 -19.47 -0.12 -1.91 16 26 C -0.09 -1.76 9.21 71.23 0.66 -1.10 16 27 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.08 0.65 6.66 -2.39 -0.02 0.63 16 30 H 0.19 1.58 6.09 -2.91 -0.02 1.56 16 31 H 0.08 0.58 7.10 -2.39 -0.02 0.56 16 32 H 0.09 0.87 8.03 -2.38 -0.02 0.85 16 33 H 0.08 0.85 6.05 -2.39 -0.01 0.83 16 34 H 0.11 2.18 8.07 -2.39 -0.02 2.16 16 35 H 0.06 1.85 7.37 -2.38 -0.02 1.83 16 36 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.34 12.54 8.43 -89.69 -0.76 11.78 16 39 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.11 3.49 8.14 -2.38 -0.02 3.47 16 41 H 0.40 19.84 7.90 -92.71 -0.73 19.11 16 42 H 0.28 14.25 8.31 -92.70 -0.77 13.47 16 43 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.09 1.30 6.64 -2.39 -0.02 1.29 16 45 H 0.04 1.10 7.29 -2.39 -0.02 1.09 16 Total: -1.00 -76.59 386.96 0.36 -76.24 By element: Atomic # 1 Polarization: 38.47 SS G_CDS: -0.45 Total: 38.02 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 7.15 Total: 17.43 kcal Atomic # 7 Polarization: -115.74 SS G_CDS: -6.96 Total: -122.70 kcal Atomic # 8 Polarization: -55.45 SS G_CDS: -0.11 Total: -55.56 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -1.30 Total: 1.02 kcal Total: -76.59 0.36 -76.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493555476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.515 kcal (2) G-P(sol) polarization free energy of solvation -76.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds