Wall clock time and date at job start Tue Mar 31 2020 22:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35445 * 128.00637 * 2 1 4 4 O 1.34043 * 106.44721 * 180.02562 * 3 2 1 5 5 N 1.20922 * 111.56271 * 359.71317 * 4 3 2 6 6 C 1.30170 * 111.60843 * 0.48100 * 5 4 3 7 7 C 1.50698 * 126.80315 * 179.79756 * 6 5 4 8 8 N 1.46902 * 109.47172 * 269.68617 * 7 6 5 9 9 C 1.48562 * 111.00010 * 290.13043 * 8 7 6 10 10 C 1.54381 * 104.59334 * 200.96093 * 9 8 7 11 11 C 1.54261 * 105.06315 * 23.84759 * 10 9 8 12 12 H 1.09002 * 110.32303 * 118.99559 * 11 10 9 13 13 N 1.46497 * 110.32584 * 241.10956 * 11 10 9 14 14 C 1.46496 * 120.00129 * 58.54688 * 13 11 10 15 15 C 1.34777 * 119.99525 * 238.54195 * 13 11 10 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 13 11 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 13 11 18 18 S 1.80997 * 109.47151 * 180.27780 * 17 15 13 19 19 C 1.76196 * 100.00314 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00018 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00626 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00336 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99494 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47141 * 90.00156 * 23 21 19 25 25 H 1.48505 * 109.47177 * 209.99950 * 23 21 19 26 26 H 1.48496 * 109.47259 * 329.99923 * 23 21 19 27 27 C 1.48565 * 110.99905 * 174.70921 * 8 7 6 28 28 H 1.08995 * 109.46938 * 269.95295 * 1 2 3 29 29 H 1.09004 * 109.46596 * 29.95927 * 1 2 3 30 30 H 1.09005 * 109.46746 * 149.95193 * 1 2 3 31 31 H 1.08004 * 126.77763 * 0.06129 * 3 2 1 32 32 H 1.09006 * 109.46861 * 149.68914 * 7 6 5 33 33 H 1.08994 * 109.47353 * 29.69020 * 7 6 5 34 34 H 1.08998 * 110.41140 * 82.18057 * 9 8 7 35 35 H 1.09000 * 110.41041 * 319.73187 * 9 8 7 36 36 H 1.09000 * 110.32217 * 264.95712 * 10 9 8 37 37 H 1.08998 * 110.32877 * 142.74775 * 10 9 8 38 38 H 1.08997 * 109.47115 * 269.99822 * 14 13 11 39 39 H 1.08995 * 109.47364 * 30.00213 * 14 13 11 40 40 H 1.09002 * 109.47090 * 149.99764 * 14 13 11 41 41 H 1.09009 * 109.47352 * 300.27556 * 17 15 13 42 42 H 1.08998 * 109.47585 * 60.27844 * 17 15 13 43 43 H 0.97003 * 119.99714 * 180.02562 * 22 21 19 44 44 H 1.08991 * 110.40796 * 40.26555 * 27 8 7 45 45 H 1.08997 * 110.41013 * 277.81744 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3411 1.0672 0.0000 4 8 3.5877 0.5747 -0.0006 5 7 3.5878 -0.6345 0.0047 6 6 2.3776 -1.1140 -0.0007 7 6 1.9828 -2.5683 -0.0010 8 7 1.8539 -3.0404 -1.3861 9 6 0.6684 -2.4360 -2.0465 10 6 0.3529 -3.3843 -3.2232 11 6 0.9590 -4.7433 -2.8164 12 1 0.1789 -5.5019 -2.7527 13 7 1.9864 -5.1505 -3.7781 14 6 3.1467 -4.2893 -4.0191 15 6 1.8641 -6.3176 -4.4410 16 8 0.9033 -7.0305 -4.2418 17 6 2.9178 -6.7336 -5.4348 18 16 2.4678 -8.3306 -6.1582 19 6 3.8307 -8.5671 -7.2496 20 1 4.6123 -7.8239 -7.3064 21 6 3.9005 -9.7089 -8.0357 22 7 4.9189 -9.8857 -8.8506 23 14 2.5490 -10.9947 -7.9369 24 1 1.4905 -10.6774 -8.9289 25 1 3.1178 -12.3344 -8.2316 26 1 1.9643 -10.9945 -6.5719 27 6 1.5897 -4.5018 -1.4281 28 1 -0.3633 -0.0008 1.0276 29 1 -0.3633 0.8904 -0.5132 30 1 -0.3633 -0.8896 -0.5146 31 1 2.0576 2.1094 0.0009 32 1 1.0288 -2.6859 0.5131 33 1 2.7466 -3.1523 0.5123 34 1 0.9062 -1.4383 -2.4156 35 1 -0.1729 -2.3959 -1.3547 36 1 0.8198 -3.0204 -4.1384 37 1 -0.7249 -3.4755 -3.3575 38 1 2.9223 -3.5957 -4.8294 39 1 3.3769 -3.7280 -3.1136 40 1 4.0043 -4.9035 -4.2937 41 1 2.9892 -5.9847 -6.2237 42 1 3.8794 -6.8218 -4.9294 43 1 4.9674 -10.6836 -9.4002 44 1 0.8926 -4.7848 -0.6395 45 1 2.5212 -5.0595 -1.3316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494801767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:50 Heat of formation + Delta-G solvation = 44.841487 kcal Electronic energy + Delta-G solvation = -26946.244421 eV Core-core repulsion = 23094.031980 eV Total energy + Delta-G solvation = -3852.212442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.28905 -40.29963 -38.59870 -35.91885 -34.63207 -32.98739 -32.41899 -31.49539 -29.77156 -28.58585 -28.38039 -27.05293 -25.88963 -25.55155 -22.44190 -21.99794 -21.48294 -20.79121 -19.07049 -17.97481 -17.91818 -17.64721 -17.01498 -16.45236 -15.78656 -15.48155 -15.34771 -15.15633 -14.93038 -14.41976 -14.08766 -13.79736 -13.69341 -13.51619 -13.22620 -13.02166 -12.79214 -12.77950 -12.52115 -12.39068 -12.29312 -12.07762 -12.01449 -11.83340 -11.63446 -11.24716 -11.21503 -11.09044 -10.99498 -10.56408 -10.36025 -9.83923 -9.76265 -9.44368 -8.98593 -8.96467 -8.52649 -8.46577 -6.89804 -6.26942 -3.98450 1.13998 1.76798 2.73710 2.90008 2.94255 3.22443 3.34378 3.51727 3.56997 3.61957 3.75428 4.11008 4.26010 4.34758 4.42177 4.45964 4.64627 4.69916 4.73626 4.87317 5.01032 5.04399 5.05638 5.11922 5.12397 5.14678 5.21507 5.28184 5.30053 5.38416 5.42729 5.50726 5.56712 5.57299 5.72294 5.74482 5.84241 5.90789 5.94458 6.06933 6.35450 6.48251 6.66021 7.50696 7.93944 7.96172 8.43956 8.46106 9.19256 10.82288 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.002111 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.729225 B =13258.052809 C =13795.764326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.198 4.198 3 C -0.066 4.066 4 O 0.102 5.898 5 N -0.346 5.346 6 C 0.027 3.973 7 C 0.122 3.878 8 N -0.502 5.502 9 C 0.033 3.967 10 C -0.136 4.136 11 C 0.141 3.859 12 H 0.110 0.890 13 N -0.610 5.610 14 C 0.075 3.925 15 C 0.533 3.467 16 O -0.523 6.523 17 C -0.119 4.119 18 S -0.145 6.145 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.235 1.235 27 C 0.023 3.977 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.214 0.786 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.050 0.950 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.270 0.730 44 H 0.058 0.942 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.544 24.119 20.524 33.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.202 4.202 3 C -0.148 4.148 4 O 0.035 5.965 5 N -0.049 5.049 6 C -0.133 4.133 7 C -0.007 4.007 8 N -0.227 5.227 9 C -0.095 4.095 10 C -0.175 4.175 11 C 0.036 3.964 12 H 0.128 0.872 13 N -0.345 5.345 14 C -0.068 4.068 15 C 0.321 3.679 16 O -0.398 6.398 17 C -0.270 4.270 18 S 0.081 5.919 19 C -0.667 4.667 20 H 0.106 0.894 21 C -0.114 4.114 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 C -0.105 4.105 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.231 0.769 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.121 22.525 20.429 31.748 hybrid contribution -0.697 0.425 -0.021 0.817 sum -9.818 22.950 20.408 32.243 Atomic orbital electron populations 1.20293 0.87570 1.03681 1.02755 1.21320 0.98574 0.91743 1.08539 1.25759 0.83306 1.01117 1.04580 1.84858 1.29023 1.15635 1.67026 1.73877 1.22277 0.91070 1.17636 1.23210 0.88542 0.97780 1.03732 1.20452 1.01272 0.88031 0.90922 1.65401 1.38391 1.04853 1.14098 1.23298 0.91307 0.99069 0.95841 1.22745 1.01330 0.94451 0.98967 1.21677 0.90819 0.96797 0.87093 0.87211 1.47818 1.23659 1.20850 1.42193 1.21843 0.87538 0.94760 1.02618 1.20351 0.86941 0.79981 0.80671 1.90673 1.32206 1.52108 1.64787 1.23303 1.00322 1.03460 0.99898 1.84751 1.35142 1.19664 1.52304 1.22311 1.08060 1.10615 1.25741 0.89398 1.24718 0.95682 0.97275 0.93691 1.69941 1.29530 1.28085 1.24159 0.86728 0.82355 0.81179 0.81541 1.19242 1.19978 1.15936 1.23547 1.01522 0.88464 0.97004 0.90928 0.90853 0.90568 0.76937 0.92089 0.88769 0.90027 0.93168 0.90005 0.90362 0.93121 0.89321 0.91037 0.88570 0.88477 0.91969 0.92416 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.34 10.31 36.01 0.37 0.03 16 2 C -0.20 -1.29 5.97 -104.42 -0.62 -1.92 16 3 C -0.07 -0.38 12.26 29.74 0.36 -0.02 16 4 O 0.10 0.91 11.20 17.17 0.19 1.11 16 5 N -0.35 -3.74 12.07 33.42 0.40 -3.34 16 6 C 0.03 0.24 6.40 -82.10 -0.53 -0.28 16 7 C 0.12 0.96 5.32 -4.98 -0.03 0.94 16 8 N -0.50 -4.38 4.24 -231.40 -0.98 -5.36 16 9 C 0.03 0.24 4.76 -2.18 -0.01 0.23 16 10 C -0.14 -1.23 6.48 -25.35 -0.16 -1.40 16 11 C 0.14 1.60 3.46 -66.55 -0.23 1.37 16 12 H 0.11 1.43 6.96 -51.93 -0.36 1.06 16 13 N -0.61 -8.37 2.74 -172.35 -0.47 -8.85 16 14 C 0.08 0.88 9.30 59.84 0.56 1.43 16 15 C 0.53 9.72 7.69 -10.98 -0.08 9.63 16 16 O -0.52 -11.25 15.22 5.55 0.08 -11.17 16 17 C -0.12 -2.38 4.71 36.01 0.17 -2.21 16 18 S -0.14 -3.73 18.55 -107.50 -1.99 -5.72 16 19 C -0.52 -15.13 10.04 30.94 0.31 -14.81 16 20 H 0.09 2.67 8.03 -52.48 -0.42 2.25 16 21 C 0.09 2.80 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.78 13.97 55.49 0.78 -26.01 16 23 Si 0.86 21.97 27.74 -169.99 -4.72 17.25 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 27 C 0.02 0.22 5.42 -2.18 -0.01 0.20 16 28 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.32 5.00 -51.93 -0.26 0.06 16 31 H 0.21 0.31 8.06 -52.48 -0.42 -0.11 16 32 H 0.06 0.38 7.88 -51.93 -0.41 -0.03 16 33 H 0.09 0.78 8.13 -51.93 -0.42 0.35 16 34 H 0.08 0.64 8.02 -51.93 -0.42 0.23 16 35 H 0.05 0.31 5.93 -51.93 -0.31 0.00 16 36 H 0.08 0.82 7.24 -51.93 -0.38 0.45 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.55 7.91 -51.93 -0.41 0.14 16 39 H 0.09 0.98 6.27 -51.93 -0.33 0.65 16 40 H 0.07 0.85 6.45 -51.93 -0.33 0.51 16 41 H 0.10 1.82 8.11 -51.91 -0.42 1.40 16 42 H 0.10 1.83 7.41 -51.92 -0.38 1.44 16 43 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.06 0.46 7.99 -51.93 -0.42 0.04 16 45 H 0.09 0.97 8.04 -51.93 -0.42 0.55 16 LS Contribution 374.46 15.07 5.64 5.64 Total: -1.00 -35.20 374.46 -7.59 -42.79 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -6.53 Total: -2.26 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 0.00 Total: -4.10 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: -0.27 Total: -43.55 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.28 Total: -10.06 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.72 Total: 17.25 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -1.99 Total: -5.72 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.20 -7.59 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494801767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.636 kcal (2) G-P(sol) polarization free energy of solvation -35.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds