Wall clock time and date at job start Tue Mar 31 2020 22:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35445 * 128.00637 * 2 1 4 4 O 1.34043 * 106.44721 * 180.02562 * 3 2 1 5 5 N 1.20922 * 111.56271 * 359.71317 * 4 3 2 6 6 C 1.30170 * 111.60843 * 0.48100 * 5 4 3 7 7 C 1.50698 * 126.80315 * 179.79756 * 6 5 4 8 8 N 1.46902 * 109.47172 * 269.68617 * 7 6 5 9 9 C 1.48562 * 111.00010 * 290.13043 * 8 7 6 10 10 C 1.54381 * 104.59334 * 200.96093 * 9 8 7 11 11 C 1.54261 * 105.06315 * 23.84759 * 10 9 8 12 12 H 1.09002 * 110.32303 * 118.99559 * 11 10 9 13 13 N 1.46497 * 110.32584 * 241.10956 * 11 10 9 14 14 C 1.46496 * 120.00129 * 58.54688 * 13 11 10 15 15 C 1.34777 * 119.99525 * 238.54195 * 13 11 10 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 13 11 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 13 11 18 18 S 1.80997 * 109.47151 * 180.27780 * 17 15 13 19 19 C 1.76196 * 100.00314 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00018 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00626 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00336 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99494 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47141 * 90.00156 * 23 21 19 25 25 H 1.48505 * 109.47177 * 209.99950 * 23 21 19 26 26 H 1.48496 * 109.47259 * 329.99923 * 23 21 19 27 27 C 1.48565 * 110.99905 * 174.70921 * 8 7 6 28 28 H 1.08995 * 109.46938 * 269.95295 * 1 2 3 29 29 H 1.09004 * 109.46596 * 29.95927 * 1 2 3 30 30 H 1.09005 * 109.46746 * 149.95193 * 1 2 3 31 31 H 1.08004 * 126.77763 * 0.06129 * 3 2 1 32 32 H 1.09006 * 109.46861 * 149.68914 * 7 6 5 33 33 H 1.08994 * 109.47353 * 29.69020 * 7 6 5 34 34 H 1.08998 * 110.41140 * 82.18057 * 9 8 7 35 35 H 1.09000 * 110.41041 * 319.73187 * 9 8 7 36 36 H 1.09000 * 110.32217 * 264.95712 * 10 9 8 37 37 H 1.08998 * 110.32877 * 142.74775 * 10 9 8 38 38 H 1.08997 * 109.47115 * 269.99822 * 14 13 11 39 39 H 1.08995 * 109.47364 * 30.00213 * 14 13 11 40 40 H 1.09002 * 109.47090 * 149.99764 * 14 13 11 41 41 H 1.09009 * 109.47352 * 300.27556 * 17 15 13 42 42 H 1.08998 * 109.47585 * 60.27844 * 17 15 13 43 43 H 0.97003 * 119.99714 * 180.02562 * 22 21 19 44 44 H 1.08991 * 110.40796 * 40.26555 * 27 8 7 45 45 H 1.08997 * 110.41013 * 277.81744 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3411 1.0672 0.0000 4 8 3.5877 0.5747 -0.0006 5 7 3.5878 -0.6345 0.0047 6 6 2.3776 -1.1140 -0.0007 7 6 1.9828 -2.5683 -0.0010 8 7 1.8539 -3.0404 -1.3861 9 6 0.6684 -2.4360 -2.0465 10 6 0.3529 -3.3843 -3.2232 11 6 0.9590 -4.7433 -2.8164 12 1 0.1789 -5.5019 -2.7527 13 7 1.9864 -5.1505 -3.7781 14 6 3.1467 -4.2893 -4.0191 15 6 1.8641 -6.3176 -4.4410 16 8 0.9033 -7.0305 -4.2418 17 6 2.9178 -6.7336 -5.4348 18 16 2.4678 -8.3306 -6.1582 19 6 3.8307 -8.5671 -7.2496 20 1 4.6123 -7.8239 -7.3064 21 6 3.9005 -9.7089 -8.0357 22 7 4.9189 -9.8857 -8.8506 23 14 2.5490 -10.9947 -7.9369 24 1 1.4905 -10.6774 -8.9289 25 1 3.1178 -12.3344 -8.2316 26 1 1.9643 -10.9945 -6.5719 27 6 1.5897 -4.5018 -1.4281 28 1 -0.3633 -0.0008 1.0276 29 1 -0.3633 0.8904 -0.5132 30 1 -0.3633 -0.8896 -0.5146 31 1 2.0576 2.1094 0.0009 32 1 1.0288 -2.6859 0.5131 33 1 2.7466 -3.1523 0.5123 34 1 0.9062 -1.4383 -2.4156 35 1 -0.1729 -2.3959 -1.3547 36 1 0.8198 -3.0204 -4.1384 37 1 -0.7249 -3.4755 -3.3575 38 1 2.9223 -3.5957 -4.8294 39 1 3.3769 -3.7280 -3.1136 40 1 4.0043 -4.9035 -4.2937 41 1 2.9892 -5.9847 -6.2237 42 1 3.8794 -6.8218 -4.9294 43 1 4.9674 -10.6836 -9.4002 44 1 0.8926 -4.7848 -0.6395 45 1 2.5212 -5.0595 -1.3316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494801767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:50 Heat of formation + Delta-G solvation = 20.934756 kcal Electronic energy + Delta-G solvation = -26947.281095 eV Core-core repulsion = 23094.031980 eV Total energy + Delta-G solvation = -3853.249115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.86669 -41.36812 -39.66521 -36.78740 -35.49852 -34.67993 -33.58730 -32.34458 -30.88626 -29.43293 -28.97190 -27.96178 -27.86828 -26.71260 -23.07907 -22.55198 -22.44889 -21.43227 -20.34712 -19.59655 -18.57937 -18.51069 -18.26518 -17.44302 -17.10379 -16.86027 -16.53365 -16.23381 -15.85406 -15.65381 -15.12733 -14.95755 -14.68300 -14.42579 -14.13009 -14.04001 -13.83190 -13.64417 -13.41644 -13.34540 -13.29111 -13.13126 -13.04552 -12.98503 -12.82614 -12.66197 -12.60472 -12.31974 -11.87844 -11.86824 -11.76859 -11.17728 -10.97450 -10.91531 -10.54463 -10.21607 -9.79891 -9.48439 -9.01173 -8.52099 -6.23347 0.65196 0.96728 1.22947 1.30918 1.45367 1.49556 1.53792 2.06627 2.24639 2.48751 2.67508 2.85849 2.94311 3.20111 3.44270 3.60027 3.66189 3.74424 4.03162 4.08985 4.14420 4.17409 4.25332 4.27336 4.32554 4.41196 4.46445 4.57354 4.62309 4.65439 4.72783 4.79620 4.81994 4.84386 4.95600 4.98259 5.01846 5.04074 5.14866 5.39220 5.52409 5.69761 5.71396 5.85296 6.10547 6.24531 6.92669 7.06692 7.40633 8.60361 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.002111 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.729225 B =13258.052809 C =13795.764326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.205 4.205 3 C -0.058 4.058 4 O 0.086 5.914 5 N -0.389 5.389 6 C 0.016 3.984 7 C 0.124 3.876 8 N -0.513 5.513 9 C 0.042 3.958 10 C -0.130 4.130 11 C 0.134 3.866 12 H 0.094 0.906 13 N -0.595 5.595 14 C 0.075 3.925 15 C 0.534 3.466 16 O -0.561 6.561 17 C -0.106 4.106 18 S -0.173 6.173 19 C -0.529 4.529 20 H 0.060 0.940 21 C 0.044 3.956 22 N -0.917 5.917 23 Si 0.916 3.084 24 H -0.261 1.261 25 H -0.258 1.258 26 H -0.237 1.237 27 C 0.032 3.968 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.254 0.746 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.277 0.723 44 H 0.076 0.924 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.436 25.946 21.887 35.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.209 4.209 3 C -0.139 4.139 4 O 0.020 5.980 5 N -0.094 5.094 6 C -0.144 4.144 7 C -0.005 4.005 8 N -0.239 5.239 9 C -0.086 4.086 10 C -0.168 4.168 11 C 0.030 3.970 12 H 0.112 0.888 13 N -0.328 5.328 14 C -0.067 4.067 15 C 0.322 3.678 16 O -0.440 6.440 17 C -0.257 4.257 18 S 0.054 5.946 19 C -0.677 4.677 20 H 0.079 0.921 21 C -0.161 4.161 22 N -0.555 5.555 23 Si 0.738 3.262 24 H -0.186 1.186 25 H -0.183 1.183 26 H -0.161 1.161 27 C -0.096 4.096 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.270 0.730 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.088 0.912 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.995 24.411 21.813 34.534 hybrid contribution -0.064 0.071 -0.366 0.378 sum -11.059 24.482 21.447 34.375 Atomic orbital electron populations 1.20360 0.85634 1.04450 1.03558 1.21659 0.99800 0.90981 1.08487 1.26563 0.81950 1.02783 1.02565 1.84802 1.30671 1.15155 1.67337 1.73874 1.23747 0.92038 1.19757 1.23508 0.88728 0.98639 1.03493 1.20458 1.01953 0.87617 0.90429 1.65349 1.39267 1.04299 1.14936 1.23266 0.91549 0.98343 0.95393 1.22700 1.01782 0.93112 0.99249 1.21893 0.89963 0.97554 0.87638 0.88828 1.47803 1.24480 1.19327 1.41232 1.21964 0.86599 0.94540 1.03589 1.19992 0.85951 0.81085 0.80777 1.90659 1.33441 1.53651 1.66229 1.23279 1.01549 1.00220 1.00650 1.84630 1.33913 1.24115 1.51972 1.22446 1.08520 1.10126 1.26577 0.92144 1.25591 0.97862 0.99288 0.93361 1.70020 1.31224 1.29160 1.25055 0.85844 0.79674 0.79229 0.81474 1.18602 1.18271 1.16053 1.23398 1.01124 0.89016 0.96085 0.90057 0.89229 0.90620 0.73011 0.90088 0.89687 0.89941 0.91041 0.90860 0.89170 0.91866 0.88341 0.91237 0.87424 0.87353 0.91344 0.90616 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.31 71.24 0.73 0.35 16 2 C -0.20 -2.17 5.97 -19.73 -0.12 -2.29 16 3 C -0.06 -0.52 12.26 67.17 0.82 0.30 16 4 O 0.09 1.45 11.20 71.60 0.80 2.26 16 5 N -0.39 -8.21 12.07 -49.56 -0.60 -8.81 16 6 C 0.02 0.25 6.40 43.58 0.28 0.53 16 7 C 0.12 1.75 5.32 85.56 0.46 2.20 16 8 N -0.51 -7.95 4.24 -886.03 -3.75 -11.71 16 9 C 0.04 0.51 4.76 86.45 0.41 0.93 16 10 C -0.13 -2.07 6.48 31.49 0.20 -1.87 16 11 C 0.13 2.84 3.46 45.89 0.16 3.00 16 12 H 0.09 2.36 6.96 -2.39 -0.02 2.34 16 13 N -0.60 -15.74 2.74 -817.59 -2.24 -17.98 16 14 C 0.08 1.65 9.30 127.77 1.19 2.84 16 15 C 0.53 19.26 7.69 87.66 0.67 19.94 16 16 O -0.56 -24.16 15.22 -3.04 -0.05 -24.20 16 17 C -0.11 -4.21 4.71 71.24 0.34 -3.88 16 18 S -0.17 -8.92 18.55 -56.49 -1.05 -9.97 16 19 C -0.53 -31.35 10.04 67.95 0.68 -30.66 16 20 H 0.06 3.79 8.03 -2.91 -0.02 3.76 16 21 C 0.04 2.64 5.50 84.86 0.47 3.10 16 22 N -0.92 -56.44 13.97 21.65 0.30 -56.14 16 23 Si 0.92 45.46 27.74 68.60 1.90 47.37 16 24 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 25 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 26 H -0.24 -11.72 6.74 99.48 0.67 -11.05 16 27 C 0.03 0.55 5.42 86.45 0.47 1.02 16 28 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.08 0.35 5.00 -2.38 -0.01 0.34 16 31 H 0.25 -0.19 8.06 -2.91 -0.02 -0.21 16 32 H 0.08 0.79 7.88 -2.38 -0.02 0.78 16 33 H 0.08 1.34 8.13 -2.39 -0.02 1.32 16 34 H 0.08 1.06 8.02 -2.39 -0.02 1.04 16 35 H 0.07 0.61 5.93 -2.39 -0.01 0.59 16 36 H 0.07 1.32 7.24 -2.39 -0.02 1.31 16 37 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.06 1.27 7.91 -2.39 -0.02 1.25 16 39 H 0.10 2.02 6.27 -2.39 -0.01 2.01 16 40 H 0.07 1.57 6.45 -2.39 -0.02 1.55 16 41 H 0.11 4.01 8.11 -2.39 -0.02 3.99 16 42 H 0.11 4.04 7.41 -2.40 -0.02 4.03 16 43 H 0.28 15.75 8.31 -92.71 -0.77 14.97 16 44 H 0.08 1.04 7.99 -2.39 -0.02 1.02 16 45 H 0.08 1.59 8.04 -2.39 -0.02 1.58 16 Total: -1.00 -77.72 374.46 3.05 -74.66 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.97 Total: 9.00 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 6.76 Total: -4.48 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -6.29 Total: -94.63 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: 0.76 Total: -21.95 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.90 Total: 47.37 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.05 Total: -9.97 kcal Total: -77.72 3.05 -74.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494801767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.597 kcal (2) G-P(sol) polarization free energy of solvation -77.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds