Wall clock time and date at job start Tue Mar 31 2020 22:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41388 * 126.79981 * 2 1 4 4 C 1.35455 * 103.98278 * 180.09015 * 3 2 1 5 5 C 1.50695 * 126.77315 * 179.90300 * 4 3 2 6 6 N 1.46899 * 109.46884 * 89.71668 * 5 4 3 7 7 C 1.48532 * 111.00236 * 307.39442 * 6 5 4 8 8 C 1.54931 * 103.23176 * 200.27687 * 7 6 5 9 9 C 1.54597 * 102.91864 * 37.41362 * 8 7 6 10 10 H 1.08996 * 110.39324 * 97.00252 * 9 8 7 11 11 N 1.46506 * 110.31021 * 219.12777 * 9 8 7 12 12 C 1.46493 * 120.00091 * 55.71634 * 11 9 8 13 13 C 1.34780 * 119.99719 * 235.71642 * 11 9 8 14 14 O 1.21279 * 120.00426 * 0.02562 * 13 11 9 15 15 C 1.50703 * 119.99340 * 179.97438 * 13 11 9 16 16 S 1.81000 * 109.46640 * 180.02562 * 15 13 11 17 17 C 1.76204 * 100.00077 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99794 * 359.97438 * 17 16 15 19 19 C 1.38797 * 119.99960 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00292 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99660 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99524 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99704 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99697 * 21 19 17 25 25 C 1.47907 * 111.00191 * 189.99514 * 6 5 4 26 26 O 1.34044 * 106.44500 * 359.64905 * 4 3 2 27 27 N 1.20918 * 111.56743 * 0.23925 * 26 4 3 28 28 H 1.09000 * 109.47080 * 270.29345 * 1 2 3 29 29 H 1.08999 * 109.47027 * 30.29266 * 1 2 3 30 30 H 1.09001 * 109.47179 * 150.29280 * 1 2 3 31 31 H 1.08000 * 128.00900 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.47829 * 329.71976 * 5 4 3 33 33 H 1.09004 * 109.47104 * 209.71309 * 5 4 3 34 34 H 1.09003 * 110.66760 * 318.71747 * 7 6 5 35 35 H 1.09009 * 110.66731 * 81.67452 * 7 6 5 36 36 H 1.09000 * 110.72649 * 279.05965 * 8 7 6 37 37 H 1.08994 * 110.72886 * 155.76976 * 8 7 6 38 38 H 1.09005 * 109.46950 * 270.00250 * 12 11 9 39 39 H 1.09006 * 109.47202 * 29.99706 * 12 11 9 40 40 H 1.09003 * 109.47462 * 150.00152 * 12 11 9 41 41 H 1.08997 * 109.46997 * 60.00690 * 15 13 11 42 42 H 1.08995 * 109.47631 * 299.99616 * 15 13 11 43 43 H 0.96998 * 119.99330 * 0.02562 * 20 19 17 44 44 H 1.08994 * 109.91219 * 26.49375 * 25 6 5 45 45 H 1.08990 * 109.91751 * 265.19634 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6025 0.6069 -0.0021 5 6 4.9021 1.3696 -0.0050 6 7 5.3235 1.6242 1.3790 7 6 4.2337 2.2661 2.1578 8 6 4.9838 2.9185 3.3461 9 6 6.2936 3.4193 2.6950 10 1 6.2100 4.4750 2.4371 11 7 7.4255 3.2059 3.6004 12 6 7.7054 1.8650 4.1198 13 6 8.2092 4.2433 3.9554 14 8 7.9773 5.3535 3.5258 15 6 9.3732 4.0238 4.8872 16 16 10.2237 5.5962 5.1707 17 6 11.5012 5.0610 6.2599 18 1 11.5658 4.0220 6.5471 19 6 12.4239 5.9751 6.7495 20 7 12.3449 7.2416 6.3998 21 14 13.7778 5.4078 7.9047 22 1 13.3050 5.5088 9.3089 23 1 14.9758 6.2663 7.7228 24 1 14.1289 3.9972 7.6009 25 6 6.4603 2.5696 1.4216 26 8 3.4537 -0.7253 0.0047 27 7 2.2868 -1.0422 0.0058 28 1 -0.3633 0.0053 1.0277 29 1 -0.3633 0.8873 -0.5184 30 1 -0.3633 -0.8926 -0.5093 31 1 2.0709 2.1744 0.0004 32 1 4.7654 2.3186 -0.5235 33 1 5.6663 0.7835 -0.5155 34 1 3.7280 3.0238 1.5593 35 1 3.5226 1.5195 2.5117 36 1 5.1955 2.1810 4.1204 37 1 4.4117 3.7525 3.7524 38 1 7.1648 1.7174 5.0547 39 1 7.3839 1.1193 3.3926 40 1 8.7756 1.7606 4.2984 41 1 10.0663 3.3108 4.4409 42 1 9.0095 3.6315 5.8368 43 1 11.6416 7.5362 5.8002 44 1 6.4419 3.2121 0.5414 45 1 7.3999 2.0188 1.4631 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494810449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:32 Heat of formation + Delta-G solvation = 12.302318 kcal Electronic energy + Delta-G solvation = -26509.618167 eV Core-core repulsion = 22655.994721 eV Total energy + Delta-G solvation = -3853.623446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.91927 -41.37919 -39.68373 -36.62862 -35.70816 -34.74205 -34.19594 -31.88339 -30.89962 -29.59937 -29.23126 -27.83074 -27.11599 -26.58271 -24.03379 -22.60477 -22.43883 -20.86576 -20.56992 -19.99470 -18.67381 -18.49272 -18.11693 -17.51533 -17.00466 -16.67891 -16.59167 -16.03403 -15.72369 -15.57146 -15.04315 -14.78085 -14.52314 -14.45241 -14.23228 -14.20295 -14.04930 -13.94187 -13.68276 -13.58639 -13.35289 -13.18114 -13.15156 -12.79540 -12.73102 -12.66102 -12.40193 -12.02500 -11.93607 -11.84115 -11.53253 -11.09959 -10.97982 -10.94721 -10.49728 -10.31375 -9.75884 -9.53856 -8.91936 -8.86583 -6.27077 0.42413 1.17885 1.24244 1.45942 1.52314 1.61867 1.80066 1.99279 2.11811 2.34197 2.90865 3.02987 3.10189 3.28560 3.39286 3.47603 3.62521 3.71973 3.97910 4.07333 4.11954 4.12213 4.20770 4.27351 4.30557 4.31662 4.39199 4.54475 4.58411 4.59895 4.65203 4.67658 4.76178 4.82584 4.89377 4.91824 4.93979 4.99873 5.08150 5.24319 5.52618 5.64930 5.65708 5.80267 6.15578 6.20033 7.03696 7.07049 7.29573 8.51614 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.038368 B = 0.001824 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.602625 B =15349.613928 C =15580.402882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.009 3.991 3 C -0.224 4.224 4 C -0.020 4.020 5 C 0.123 3.877 6 N -0.515 5.515 7 C 0.044 3.956 8 C -0.128 4.128 9 C 0.128 3.872 10 H 0.087 0.913 11 N -0.598 5.598 12 C 0.071 3.929 13 C 0.533 3.467 14 O -0.565 6.565 15 C -0.104 4.104 16 S -0.196 6.196 17 C -0.613 4.613 18 H 0.075 0.925 19 C -0.018 4.018 20 N -0.913 5.913 21 Si 1.138 2.862 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.262 1.262 25 C 0.035 3.965 26 O 0.085 5.915 27 N -0.401 5.401 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.194 0.806 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.261 0.739 44 H 0.068 0.932 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.553 -16.868 -13.284 31.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.150 4.150 3 C -0.246 4.246 4 C -0.084 4.084 5 C -0.005 4.005 6 N -0.240 5.240 7 C -0.084 4.084 8 C -0.166 4.166 9 C 0.024 3.976 10 H 0.105 0.895 11 N -0.331 5.331 12 C -0.071 4.071 13 C 0.320 3.680 14 O -0.444 6.444 15 C -0.255 4.255 16 S 0.031 5.969 17 C -0.761 4.761 18 H 0.093 0.907 19 C -0.222 4.222 20 N -0.548 5.548 21 Si 0.956 3.044 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.187 1.187 25 C -0.093 4.093 26 O 0.022 5.978 27 N -0.109 5.109 28 H 0.108 0.892 29 H 0.121 0.879 30 H 0.092 0.908 31 H 0.211 0.789 32 H 0.112 0.888 33 H 0.129 0.871 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.690 -16.580 -12.869 30.182 hybrid contribution -1.224 0.003 -0.691 1.406 sum -22.913 -16.577 -13.560 31.364 Atomic orbital electron populations 1.20315 0.84043 1.04744 1.04323 1.24195 1.00448 0.88726 1.01587 1.22780 0.90565 1.01942 1.09299 1.24546 0.98531 0.83352 1.01980 1.20854 0.90224 0.98489 0.90896 1.64935 1.06022 1.42016 1.11046 1.23221 0.93679 0.97437 0.94068 1.22834 0.94322 1.00971 0.98517 1.21994 0.85613 1.00560 0.89477 0.89525 1.47816 1.28934 1.08829 1.47505 1.22024 1.02463 0.81966 1.00598 1.20070 0.82949 0.84332 0.80609 1.90669 1.72150 1.25357 1.56182 1.23236 0.98347 1.01700 1.02231 1.85026 1.35682 1.13211 1.62979 1.24054 1.17080 0.99864 1.35065 0.90718 1.27811 1.02070 0.92782 0.99506 1.70892 1.33900 1.16865 1.33193 0.82693 0.72105 0.75828 0.73770 1.19329 1.20447 1.18666 1.23176 0.95635 0.93715 0.96769 1.84802 1.21473 1.23833 1.67706 1.73878 0.89870 1.25619 1.21571 0.89222 0.87884 0.90760 0.78883 0.88805 0.87100 0.91683 0.89934 0.89796 0.90209 0.91378 0.88239 0.90580 0.87178 0.87451 0.92834 0.91336 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.47 71.24 0.75 0.10 16 2 C 0.01 0.13 7.33 43.58 0.32 0.45 16 3 C -0.22 -2.61 9.97 22.40 0.22 -2.39 16 4 C -0.02 -0.27 6.07 25.04 0.15 -0.12 16 5 C 0.12 1.26 5.60 85.56 0.48 1.74 16 6 N -0.51 -6.78 5.39 -887.58 -4.78 -11.57 16 7 C 0.04 0.54 5.07 86.65 0.44 0.98 16 8 C -0.13 -2.05 6.65 31.80 0.21 -1.84 16 9 C 0.13 2.65 3.39 45.87 0.16 2.80 16 10 H 0.09 2.24 6.96 -2.39 -0.02 2.23 16 11 N -0.60 -14.99 2.77 -817.65 -2.27 -17.25 16 12 C 0.07 1.29 8.83 127.77 1.13 2.42 16 13 C 0.53 19.31 7.69 87.66 0.67 19.99 16 14 O -0.56 -25.35 15.22 -3.03 -0.05 -25.39 16 15 C -0.10 -4.09 4.71 71.24 0.34 -3.76 16 16 S -0.20 -10.72 19.60 -56.49 -1.11 -11.83 16 17 C -0.61 -35.20 9.50 67.95 0.65 -34.55 16 18 H 0.07 4.02 7.80 -2.91 -0.02 4.00 16 19 C -0.02 -1.07 5.49 84.86 0.47 -0.60 16 20 N -0.91 -57.82 13.67 21.65 0.30 -57.52 16 21 Si 1.14 49.12 29.92 68.60 2.05 51.17 16 22 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 25 C 0.04 0.55 5.86 86.45 0.51 1.06 16 26 O 0.09 1.68 11.20 71.60 0.80 2.48 16 27 N -0.40 -8.37 12.07 -49.56 -0.60 -8.97 16 28 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.19 1.16 8.06 -2.91 -0.02 1.14 16 32 H 0.09 0.63 7.81 -2.39 -0.02 0.61 16 33 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.06 0.64 7.85 -2.39 -0.02 0.62 16 35 H 0.08 1.10 7.74 -2.38 -0.02 1.08 16 36 H 0.08 1.37 6.84 -2.39 -0.02 1.35 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.07 1.10 7.87 -2.38 -0.02 1.09 16 39 H 0.10 1.45 6.97 -2.38 -0.02 1.43 16 40 H 0.08 1.39 6.44 -2.39 -0.02 1.38 16 41 H 0.11 3.94 7.40 -2.40 -0.02 3.92 16 42 H 0.11 3.89 8.11 -2.40 -0.02 3.87 16 43 H 0.26 17.17 7.12 -92.71 -0.66 16.50 16 44 H 0.07 0.94 7.57 -2.39 -0.02 0.93 16 45 H 0.09 1.49 7.10 -2.39 -0.02 1.48 16 Total: -1.00 -79.85 380.16 1.94 -77.91 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 1.11 Total: 14.70 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: 6.48 Total: -13.73 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -7.35 Total: -95.31 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: 0.76 Total: -22.91 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 2.05 Total: 51.17 kcal Atomic # 16 Polarization: -10.72 SS G_CDS: -1.11 Total: -11.83 kcal Total: -79.85 1.94 -77.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494810449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.212 kcal (2) G-P(sol) polarization free energy of solvation -79.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds