Wall clock time and date at job start Tue Mar 31 2020 22:12:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 N 1.30176 * 126.80368 * 2 1
4 4 O 1.20926 * 111.60194 * 180.25489 * 3 2 1
5 5 C 1.34042 * 111.57011 * 359.74478 * 4 3 2
6 6 C 1.35454 * 106.44470 * 359.97438 * 5 4 3
7 7 C 1.50703 * 128.00636 * 179.97438 * 6 5 4
8 8 N 1.46900 * 109.46458 * 94.54109 * 7 6 5
9 9 C 1.48566 * 111.00106 * 289.41353 * 8 7 6
10 10 C 1.54376 * 104.59077 * 159.04626 * 9 8 7
11 11 C 1.54262 * 105.15361 * 336.09647 * 10 9 8
12 12 C 1.53000 * 110.32675 * 241.15888 * 11 10 9
13 13 N 1.46503 * 110.32092 * 118.94799 * 11 10 9
14 14 C 1.34770 * 119.99988 * 61.45890 * 13 11 10
15 15 O 1.21285 * 120.00172 * 359.97438 * 14 13 11
16 16 C 1.50702 * 120.00023 * 179.97438 * 14 13 11
17 17 S 1.81007 * 109.46887 * 179.97438 * 16 14 13
18 18 C 1.76206 * 99.99683 * 179.97438 * 17 16 14
19 19 H 1.08001 * 119.99955 * 0.02562 * 18 17 16
20 20 C 1.38797 * 120.00102 * 179.97438 * 18 17 16
21 21 N 1.31634 * 119.99868 * 0.02562 * 20 18 17
22 22 Si 1.86793 * 120.00048 * 180.02562 * 20 18 17
23 23 H 1.48498 * 109.47203 * 0.02562 * 22 20 18
24 24 H 1.48500 * 109.46961 * 120.00268 * 22 20 18
25 25 H 1.48501 * 109.46826 * 239.99886 * 22 20 18
26 26 C 1.48553 * 111.00388 * 44.83843 * 8 7 6
27 27 H 1.09008 * 109.47135 * 275.68890 * 1 2 3
28 28 H 1.08997 * 109.47294 * 35.68432 * 1 2 3
29 29 H 1.09002 * 109.47398 * 155.68660 * 1 2 3
30 30 H 1.07999 * 126.77800 * 179.97438 * 5 4 3
31 31 H 1.09001 * 109.47196 * 334.54127 * 7 6 5
32 32 H 1.08996 * 109.46781 * 214.53699 * 7 6 5
33 33 H 1.09005 * 110.40682 * 40.26754 * 9 8 7
34 34 H 1.08999 * 110.51474 * 277.87854 * 9 8 7
35 35 H 1.08998 * 110.32480 * 95.05288 * 10 9 8
36 36 H 1.09008 * 110.31934 * 217.15273 * 10 9 8
37 37 H 1.08999 * 109.46817 * 58.54504 * 12 11 10
38 38 H 1.09000 * 109.47229 * 178.54688 * 12 11 10
39 39 H 1.09000 * 109.46840 * 298.54612 * 12 11 10
40 40 H 0.96997 * 119.99831 * 241.45332 * 13 11 10
41 41 H 1.08997 * 109.47060 * 299.99744 * 16 14 13
42 42 H 1.09001 * 109.47045 * 60.00488 * 16 14 13
43 43 H 0.96992 * 120.00099 * 179.97438 * 21 20 18
44 44 H 1.08995 * 110.41440 * 319.73760 * 26 8 7
45 45 H 1.09003 * 110.40845 * 82.06425 * 26 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.2868 1.0423 0.0000
4 8 3.4537 0.7252 -0.0050
5 6 3.6024 -0.6069 -0.0035
6 6 2.3539 -1.1321 0.0038
7 6 1.9589 -2.5865 0.0078
8 7 1.7322 -3.0284 1.3903
9 6 3.0120 -3.1073 2.1407
10 6 2.5966 -3.0405 3.6260
11 6 1.2266 -2.3316 3.6301
12 6 1.3037 -1.0307 4.4319
13 7 0.1987 -3.2141 4.1877
14 6 0.3022 -3.6502 5.4587
15 8 1.2465 -3.3125 6.1408
16 6 -0.7554 -4.5576 6.0324
17 16 -0.3357 -4.9659 7.7452
18 6 -1.6991 -6.0041 8.1551
19 1 -2.4645 -6.2055 7.4203
20 6 -1.7888 -6.5639 9.4220
21 7 -0.8556 -6.3188 10.3174
22 14 -3.2338 -7.6650 9.8563
23 1 -4.1372 -7.7819 8.6836
24 1 -2.7342 -9.0121 10.2319
25 1 -3.9783 -7.0770 10.9988
26 6 0.9286 -2.0312 2.1430
27 1 -0.3634 0.1019 1.0227
28 1 -0.3634 0.8347 -0.5994
29 1 -0.3634 -0.9365 -0.4231
30 1 4.5338 -1.1536 -0.0074
31 1 2.7568 -3.1808 -0.4375
32 1 1.0437 -2.7159 -0.5698
33 1 3.6540 -2.2636 1.8871
34 1 3.5209 -4.0479 1.9301
35 1 2.5044 -4.0450 4.0389
36 1 3.3237 -2.4626 4.1967
37 1 2.0630 -0.3806 3.9973
38 1 0.3365 -0.5289 4.4042
39 1 1.5666 -1.2561 5.4654
40 1 -0.5563 -3.4845 3.6421
41 1 -1.7211 -4.0528 6.0051
42 1 -0.8072 -5.4732 5.4433
43 1 -0.9184 -6.7097 11.2029
44 1 1.2444 -1.0192 1.8898
45 1 -0.1329 -2.1613 1.9322
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001500184392.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:12:36
Heat of formation + Delta-G solvation = 10.585604 kcal
Electronic energy + Delta-G solvation = -27477.272676 eV
Core-core repulsion = 23623.574788 eV
Total energy + Delta-G solvation = -3853.697888 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-45.96421 -41.45636 -39.62942 -36.64212 -35.15711 -34.57475 -33.47275 -32.29490
-30.77664 -30.00139 -29.63911 -28.04953 -27.64702 -25.90122 -23.31853 -22.67020
-22.10481 -21.45643 -20.47201 -19.80277 -18.67969 -18.42791 -17.76188 -17.50425
-16.87393 -16.63434 -16.30781 -16.26940 -15.82903 -15.71794 -14.92054 -14.78244
-14.53881 -14.36058 -14.24370 -14.04462 -13.96205 -13.73614 -13.43065 -13.29470
-13.14453 -13.10938 -13.05159 -12.90530 -12.59142 -12.54436 -12.27065 -12.05389
-11.86130 -11.77871 -11.69055 -11.15011 -10.83665 -10.67182 -10.46717 -10.24882
-10.06779 -9.57058 -8.64242 -8.34062 -6.11125 0.54515 1.19130 1.28758
1.41608 1.48359 1.59449 1.69573 2.26820 2.33378 2.38571 3.00108
3.02428 3.24389 3.32345 3.39788 3.58206 3.71263 3.91230 4.00896
4.05606 4.09109 4.23254 4.32085 4.36660 4.52591 4.54213 4.56104
4.60498 4.64303 4.66184 4.68072 4.73432 4.79977 4.87545 4.89704
4.95209 5.06141 5.19824 5.21771 5.26048 5.42998 5.61123 5.77687
5.95590 6.20913 6.60815 7.07577 7.32045 7.34346 8.75325
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.028914 B = 0.002199 C = 0.002174
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 968.148185 B =12732.448781 C =12877.070965
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.084 4.084
2 C 0.020 3.980
3 N -0.402 5.402
4 O 0.081 5.919
5 C -0.040 4.040
6 C -0.242 4.242
7 C 0.121 3.879
8 N -0.498 5.498
9 C 0.036 3.964
10 C -0.125 4.125
11 C 0.173 3.827
12 C -0.154 4.154
13 N -0.700 5.700
14 C 0.536 3.464
15 O -0.554 6.554
16 C -0.130 4.130
17 S -0.149 6.149
18 C -0.544 4.544
19 H 0.081 0.919
20 C 0.012 3.988
21 N -0.912 5.912
22 Si 0.998 3.002
23 H -0.257 1.257
24 H -0.274 1.274
25 H -0.274 1.274
26 C 0.035 3.965
27 H 0.085 0.915
28 H 0.076 0.924
29 H 0.102 0.898
30 H 0.249 0.751
31 H 0.109 0.891
32 H 0.105 0.895
33 H 0.060 0.940
34 H 0.094 0.906
35 H 0.052 0.948
36 H 0.064 0.936
37 H 0.068 0.932
38 H 0.062 0.938
39 H 0.049 0.951
40 H 0.414 0.586
41 H 0.106 0.894
42 H 0.105 0.895
43 H 0.271 0.729
44 H 0.072 0.928
45 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.874 9.702 -27.907 29.945
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.139 4.139
3 N -0.111 5.111
4 O 0.019 5.981
5 C -0.122 4.122
6 C -0.247 4.247
7 C -0.007 4.007
8 N -0.220 5.220
9 C -0.092 4.092
10 C -0.164 4.164
11 C 0.086 3.914
12 C -0.212 4.212
13 N -0.355 5.355
14 C 0.322 3.678
15 O -0.432 6.432
16 C -0.281 4.281
17 S 0.079 5.921
18 C -0.692 4.692
19 H 0.099 0.901
20 C -0.192 4.192
21 N -0.548 5.548
22 Si 0.820 3.180
23 H -0.180 1.180
24 H -0.199 1.199
25 H -0.200 1.200
26 C -0.093 4.093
27 H 0.103 0.897
28 H 0.095 0.905
29 H 0.120 0.880
30 H 0.265 0.735
31 H 0.127 0.873
32 H 0.123 0.877
33 H 0.078 0.922
34 H 0.112 0.888
35 H 0.071 0.929
36 H 0.082 0.918
37 H 0.087 0.913
38 H 0.081 0.919
39 H 0.068 0.932
40 H 0.251 0.749
41 H 0.124 0.876
42 H 0.124 0.876
43 H 0.080 0.920
44 H 0.090 0.910
45 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges 6.030 11.031 -26.686 29.499
hybrid contribution -1.465 -0.999 -0.032 1.773
sum 4.565 10.032 -26.718 28.902
Atomic orbital electron populations
1.20423 0.84725 1.04934 1.03992 1.23983 1.00020 0.88475 1.01443
1.73892 0.90109 1.25570 1.21486 1.84805 1.21276 1.24398 1.67606
1.26621 1.02037 0.82872 1.00690 1.22217 0.92496 0.99553 1.10478
1.20878 1.03969 0.85355 0.90526 1.65787 1.12924 1.41530 1.01712
1.23182 0.92103 1.02509 0.91430 1.22622 0.96147 1.00540 0.97082
1.21081 0.87872 0.89196 0.93233 1.22119 1.02241 0.96008 1.00864
1.45881 1.27433 1.50111 1.12034 1.19942 0.85844 0.79943 0.82072
1.90668 1.34192 1.57878 1.60447 1.23379 1.01465 1.02275 1.00964
1.85532 1.35381 1.63361 1.07861 1.23236 1.10009 1.34190 1.01794
0.90054 1.26124 1.00115 0.97946 0.95055 1.70189 1.35110 1.43996
1.05530 0.84911 0.77204 0.77306 0.78563 1.18037 1.19937 1.19967
1.23632 1.00568 0.95793 0.89328 0.89681 0.90508 0.87979 0.73521
0.87305 0.87700 0.92162 0.88817 0.92877 0.91751 0.91327 0.91869
0.93236 0.74894 0.87594 0.87638 0.92040 0.91038 0.87798
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.85 9.29 71.23 0.66 -0.19 16
2 C 0.02 0.30 5.78 43.58 0.25 0.55 16
3 N -0.40 -7.91 12.07 -49.56 -0.60 -8.51 16
4 O 0.08 1.35 11.20 71.61 0.80 2.15 16
5 C -0.04 -0.40 11.02 67.18 0.74 0.34 16
6 C -0.24 -2.68 3.96 -19.73 -0.08 -2.75 16
7 C 0.12 1.03 6.04 85.56 0.52 1.54 16
8 N -0.50 -6.63 5.65 -885.56 -5.00 -11.64 16
9 C 0.04 0.54 6.33 86.45 0.55 1.09 16
10 C -0.12 -2.96 5.48 31.49 0.17 -2.78 16
11 C 0.17 3.83 1.01 4.58 0.00 3.83 16
12 C -0.15 -3.82 8.17 71.98 0.59 -3.24 16
13 N -0.70 -17.53 5.10 -418.51 -2.13 -19.66 16
14 C 0.54 19.38 7.01 87.66 0.61 19.99 16
15 O -0.55 -24.66 13.16 -3.04 -0.04 -24.70 16
16 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16
17 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16
18 C -0.54 -31.14 9.50 67.95 0.65 -30.50 16
19 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16
20 C 0.01 0.70 5.49 84.86 0.47 1.16 16
21 N -0.91 -56.15 13.22 21.65 0.29 -55.86 16
22 Si 1.00 43.71 29.55 68.60 2.03 45.74 16
23 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16
24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16
25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16
26 C 0.03 0.52 4.33 86.53 0.38 0.89 16
27 H 0.08 0.84 7.48 -2.38 -0.02 0.83 16
28 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16
29 H 0.10 0.63 7.63 -2.39 -0.02 0.61 16
30 H 0.25 0.40 8.06 -2.91 -0.02 0.38 16
31 H 0.11 0.58 8.08 -2.39 -0.02 0.56 16
32 H 0.10 0.69 7.67 -2.39 -0.02 0.68 16
33 H 0.06 0.74 6.21 -2.38 -0.01 0.73 16
34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16
35 H 0.05 1.58 7.31 -2.39 -0.02 1.56 16
36 H 0.06 1.65 7.71 -2.38 -0.02 1.63 16
37 H 0.07 1.50 8.13 -2.39 -0.02 1.48 16
38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16
39 H 0.05 1.62 6.32 -2.39 -0.02 1.60 16
40 H 0.41 7.78 8.27 -92.71 -0.77 7.01 16
41 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16
42 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16
43 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16
44 H 0.07 1.09 3.81 -2.39 -0.01 1.08 16
45 H 0.10 1.23 7.76 -2.39 -0.02 1.21 16
Total: -1.00 -79.29 372.68 0.38 -78.91
By element:
Atomic # 1 Polarization: 17.46 SS G_CDS: 0.25 Total: 17.71 kcal
Atomic # 6 Polarization: -20.69 SS G_CDS: 5.95 Total: -14.75 kcal
Atomic # 7 Polarization: -88.22 SS G_CDS: -7.45 Total: -95.67 kcal
Atomic # 8 Polarization: -23.31 SS G_CDS: 0.76 Total: -22.55 kcal
Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal
Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal
Total: -79.29 0.38 -78.91 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001500184392.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.497 kcal
(2) G-P(sol) polarization free energy of solvation -79.288 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.209 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.376 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.911 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.586 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds