Wall clock time and date at job start Tue Mar 31 2020 22:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34479 * 126.16460 * 2 1 4 4 C 1.30255 * 108.69938 * 180.26999 * 3 2 1 5 5 O 1.33962 * 108.76129 * 359.76438 * 4 3 2 6 6 C 1.34324 * 126.16781 * 179.86249 * 2 1 3 7 7 C 1.50709 * 126.44291 * 359.97438 * 6 2 1 8 8 N 1.46904 * 109.46565 * 89.71559 * 7 6 2 9 9 C 1.46906 * 110.99383 * 180.02562 * 8 7 6 10 10 H 1.09000 * 110.91571 * 37.44405 * 9 8 7 11 11 C 1.54914 * 111.00138 * 273.54550 * 9 8 7 12 12 N 1.47426 * 104.82992 * 204.91985 * 11 9 8 13 13 C 1.34775 * 125.64489 * 204.09098 * 12 11 9 14 14 O 1.21286 * 120.00271 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99749 * 180.02562 * 13 12 11 16 16 S 1.81001 * 109.46889 * 180.02562 * 15 13 12 17 17 C 1.76203 * 99.99862 * 180.02562 * 16 15 13 18 18 H 1.07994 * 119.99657 * 359.97438 * 17 16 15 19 19 C 1.38799 * 120.00093 * 180.02562 * 17 16 15 20 20 N 1.31635 * 119.99881 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00022 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47064 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47329 * 119.99809 * 21 19 17 24 24 H 1.48502 * 109.46753 * 239.99928 * 21 19 17 25 25 C 1.47018 * 108.70517 * 24.12623 * 12 11 9 26 26 C 1.54325 * 107.40412 * 358.86539 * 25 12 11 27 27 H 1.09002 * 110.72265 * 219.52294 * 26 25 12 28 28 C 1.53004 * 110.72125 * 96.24436 * 26 25 12 29 29 H 1.09000 * 109.47209 * 270.13936 * 1 2 3 30 30 H 1.09002 * 109.47359 * 30.14017 * 1 2 3 31 31 H 1.09005 * 109.46831 * 150.14135 * 1 2 3 32 32 H 1.08007 * 125.61922 * 179.77812 * 4 3 2 33 33 H 1.08990 * 109.46838 * 329.71678 * 7 6 2 34 34 H 1.09000 * 109.46834 * 209.71254 * 7 6 2 35 35 H 1.00894 * 111.00296 * 56.04927 * 8 7 6 36 36 H 1.08999 * 110.37121 * 86.07720 * 11 9 8 37 37 H 1.09001 * 110.45739 * 323.80332 * 11 9 8 38 38 H 1.08998 * 109.47418 * 300.00009 * 15 13 12 39 39 H 1.08995 * 109.46873 * 60.00330 * 15 13 12 40 40 H 0.96993 * 119.99756 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.88241 * 118.36067 * 25 12 11 42 42 H 1.09000 * 109.88049 * 239.37196 * 25 12 11 43 43 H 1.08999 * 109.47052 * 61.45720 * 28 26 25 44 44 H 1.08993 * 109.46847 * 181.45696 * 28 26 25 45 45 H 1.09005 * 109.46970 * 301.45810 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5430 0.6948 -0.0058 5 8 3.5733 -0.6445 -0.0044 6 6 2.2997 -1.0844 0.0026 7 6 1.8493 -2.5226 0.0066 8 7 1.6959 -2.9914 -1.3772 9 6 1.2562 -4.3927 -1.4124 10 1 0.5467 -4.5982 -0.6109 11 6 2.4671 -5.3564 -1.3427 12 7 1.9971 -6.5996 -1.9806 13 6 2.4975 -7.8320 -1.7628 14 8 3.4141 -7.9853 -0.9834 15 6 1.9181 -9.0194 -2.4876 16 16 2.7960 -10.5203 -1.9849 17 6 1.9398 -11.7154 -2.9562 18 1 1.1364 -11.4060 -3.6082 19 6 2.2972 -13.0546 -2.8825 20 7 3.2762 -13.4317 -2.0874 21 14 1.3890 -14.3216 -3.9116 22 1 0.3387 -13.6459 -4.7150 23 1 2.3476 -15.0006 -4.8201 24 1 0.7584 -15.3256 -3.0174 25 6 0.8928 -6.2724 -2.8943 26 6 0.6481 -4.7518 -2.7967 27 1 -0.4190 -4.5306 -2.8209 28 6 1.3814 -4.0125 -3.9177 29 1 -0.3633 0.0025 1.0277 30 1 -0.3634 0.8887 -0.5160 31 1 -0.3633 -0.8913 -0.5117 32 1 4.4066 1.3435 -0.0107 33 1 0.8941 -2.6027 0.5253 34 1 2.5927 -3.1347 0.5173 35 1 2.5511 -2.8672 -1.8979 36 1 2.7438 -5.5435 -0.3051 37 1 3.3138 -4.9448 -1.8920 38 1 0.8613 -9.1166 -2.2392 39 1 2.0270 -8.8773 -3.5628 40 1 3.5256 -14.3676 -2.0356 41 1 1.1651 -6.5393 -3.9155 42 1 -0.0063 -6.8124 -2.5974 43 1 1.0015 -4.3473 -4.8829 44 1 1.2161 -2.9401 -3.8143 45 1 2.4489 -4.2234 -3.8544 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502703376.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:04 Heat of formation + Delta-G solvation = -9.095220 kcal Electronic energy + Delta-G solvation = -26418.403289 eV Core-core repulsion = 22563.851976 eV Total energy + Delta-G solvation = -3854.551313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.70248 -40.24220 -38.05890 -35.77505 -35.41329 -32.79935 -32.44745 -31.71684 -30.09514 -28.73633 -27.18219 -26.70557 -25.54043 -25.15863 -23.04485 -22.45704 -21.19329 -20.07456 -19.41117 -17.89348 -17.50691 -17.14559 -16.77434 -16.33968 -16.10275 -15.53325 -14.92087 -14.84219 -14.80799 -14.47750 -14.17361 -13.88855 -13.65285 -13.59592 -13.30121 -13.06192 -12.96645 -12.84408 -12.71356 -12.52093 -12.40069 -12.22211 -11.86248 -11.42338 -11.36401 -11.21715 -11.08843 -11.03581 -10.94936 -10.83976 -10.77771 -9.83376 -9.50025 -9.17593 -9.09332 -8.90882 -8.54655 -8.25583 -6.52782 -6.23768 -3.94604 1.03549 2.28009 2.36346 2.84267 3.01091 3.20078 3.23938 3.29493 3.53638 3.73622 3.81953 4.16040 4.19201 4.24846 4.34858 4.49929 4.61796 4.75650 4.84180 4.95924 4.98203 5.02444 5.11514 5.24130 5.25957 5.27046 5.39512 5.41549 5.46820 5.50465 5.59313 5.61127 5.64169 5.70324 5.74847 5.84567 5.89881 5.99816 6.08416 6.11153 6.28941 6.43191 6.74798 7.34541 7.57764 7.61018 8.33530 8.50319 9.21648 10.83752 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029797 B = 0.001910 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.451528 B =14658.041605 C =15162.529217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.008 3.992 3 N -0.489 5.489 4 C 0.173 3.827 5 O -0.204 6.204 6 C -0.050 4.050 7 C 0.143 3.857 8 N -0.667 5.667 9 C 0.078 3.922 10 H 0.100 0.900 11 C 0.081 3.919 12 N -0.622 5.622 13 C 0.548 3.452 14 O -0.516 6.516 15 C -0.146 4.146 16 S -0.062 6.062 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.102 3.898 26 C -0.088 4.088 27 H 0.094 0.906 28 C -0.142 4.142 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.249 0.751 33 H 0.108 0.892 34 H 0.056 0.944 35 H 0.350 0.650 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.164 28.036 0.993 28.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.112 4.112 3 N -0.219 5.219 4 C -0.053 4.053 5 O -0.090 6.090 6 C -0.103 4.103 7 C 0.014 3.986 8 N -0.298 5.298 9 C -0.033 4.033 10 H 0.118 0.882 11 C -0.045 4.045 12 N -0.360 5.360 13 C 0.337 3.663 14 O -0.390 6.390 15 C -0.296 4.296 16 S 0.165 5.835 17 C -0.682 4.682 18 H 0.092 0.908 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.746 3.254 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.021 4.021 26 C -0.108 4.108 27 H 0.112 0.888 28 C -0.199 4.199 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.265 0.735 33 H 0.126 0.874 34 H 0.074 0.926 35 H 0.169 0.831 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.444 28.416 2.174 29.015 hybrid contribution -0.334 -1.616 -1.332 2.121 sum -5.778 26.800 0.842 27.429 Atomic orbital electron populations 1.20161 0.86332 1.03867 1.02717 1.21526 0.98066 0.87303 1.04312 1.70388 1.01452 1.31882 1.18143 1.28022 0.97603 0.79267 1.00423 1.84437 1.30245 1.24729 1.69589 1.22985 0.80708 0.97634 1.08940 1.20341 1.01392 0.85582 0.91256 1.60636 1.38727 1.18708 1.11712 1.22882 0.96187 0.85414 0.98773 0.88189 1.22869 0.96944 0.85523 0.99150 1.48349 1.36502 1.06032 1.45111 1.20073 0.82311 0.82063 0.81856 1.90712 1.28447 1.84180 1.35676 1.23498 1.04567 0.98737 1.02833 1.85409 1.46274 0.93398 1.58451 1.22895 1.22017 0.93879 1.29448 0.90850 1.25003 0.95224 0.97737 0.95677 1.70029 1.27071 1.17243 1.35924 0.86106 0.79323 0.80422 0.79586 1.19593 1.20552 1.20552 1.22171 0.90235 0.95239 0.94475 1.22226 1.01079 0.93101 0.94366 0.88768 1.21723 1.00030 1.00996 0.97156 0.90930 0.90694 0.89864 0.73515 0.87378 0.92624 0.83086 0.90557 0.91843 0.89248 0.89280 0.92222 0.90994 0.91072 0.92383 0.91183 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.05 36.00 0.36 -0.11 16 2 C 0.01 0.07 7.11 -82.82 -0.59 -0.51 16 3 N -0.49 -4.76 11.29 -11.18 -0.13 -4.89 16 4 C 0.17 1.26 13.23 52.09 0.69 1.95 16 5 O -0.20 -1.78 10.77 5.38 0.06 -1.72 16 6 C -0.05 -0.42 6.90 -35.68 -0.25 -0.66 16 7 C 0.14 0.96 5.71 -4.97 -0.03 0.93 16 8 N -0.67 -4.49 5.43 -105.57 -0.57 -5.06 16 9 C 0.08 0.60 3.12 -65.42 -0.20 0.39 16 10 H 0.10 0.72 7.92 -51.93 -0.41 0.31 16 11 C 0.08 0.89 6.17 -2.53 -0.02 0.88 16 12 N -0.62 -8.61 3.33 -170.51 -0.57 -9.18 16 13 C 0.55 10.49 7.87 -10.98 -0.09 10.40 16 14 O -0.52 -11.95 16.12 5.55 0.09 -11.86 16 15 C -0.15 -2.97 5.35 36.01 0.19 -2.78 16 16 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 17 C -0.53 -15.18 9.50 30.94 0.29 -14.89 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.57 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 20 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 21 Si 0.92 21.33 29.55 -169.99 -5.02 16.30 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.10 1.04 6.06 -3.07 -0.02 1.02 16 26 C -0.09 -0.66 3.58 -88.65 -0.32 -0.97 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 C -0.14 -1.01 8.11 37.16 0.30 -0.71 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.46 7.80 -51.93 -0.40 0.06 16 32 H 0.25 0.59 8.06 -52.48 -0.42 0.16 16 33 H 0.11 0.58 7.76 -51.93 -0.40 0.18 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.35 2.50 7.64 -39.30 -0.30 2.20 16 36 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 37 H 0.06 0.70 7.40 -51.93 -0.38 0.31 16 38 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 39 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.48 7.64 -51.93 -0.40 0.08 16 45 H 0.05 0.43 7.46 -51.93 -0.39 0.04 16 LS Contribution 388.66 15.07 5.86 5.86 Total: -1.00 -36.35 388.66 -8.39 -44.73 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -6.86 Total: -1.80 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 0.24 Total: -3.09 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: -0.53 Total: -44.52 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.15 Total: -13.58 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.35 -8.39 -44.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502703376.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.637 kcal (2) G-P(sol) polarization free energy of solvation -36.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds