Wall clock time and date at job start Tue Mar 31 2020 22:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34327 * 126.44645 * 2 1 4 4 N 1.34476 * 107.67392 * 179.76698 * 3 2 1 5 5 C 1.30256 * 108.69802 * 0.42623 * 4 3 2 6 6 C 1.50702 * 125.62344 * 179.83658 * 5 4 3 7 7 N 1.46908 * 109.46886 * 89.68904 * 6 5 4 8 8 C 1.47475 * 110.99851 * 190.00422 * 7 6 5 9 9 C 1.53506 * 87.99830 * 138.67481 * 8 7 6 10 10 C 1.53004 * 114.17261 * 220.35762 * 9 8 7 11 11 H 1.08996 * 109.46937 * 54.87255 * 10 9 8 12 12 C 1.52995 * 109.47082 * 174.87139 * 10 9 8 13 13 N 1.46497 * 109.46935 * 294.86947 * 10 9 8 14 14 C 1.34777 * 119.99902 * 154.99705 * 13 10 9 15 15 O 1.21286 * 120.00124 * 0.02562 * 14 13 10 16 16 C 1.50699 * 120.00437 * 180.02562 * 14 13 10 17 17 S 1.81000 * 109.47381 * 180.02562 * 16 14 13 18 18 C 1.76202 * 99.99716 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00381 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99637 * 179.97438 * 18 17 16 21 21 N 1.31628 * 119.99688 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00093 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47124 * 89.99588 * 22 20 18 24 24 H 1.48500 * 109.47017 * 209.99960 * 22 20 18 25 25 H 1.48501 * 109.46793 * 329.99426 * 22 20 18 26 26 C 1.47480 * 111.00158 * 285.97681 * 7 6 5 27 27 O 1.33971 * 108.76148 * 359.57084 * 5 4 3 28 28 H 1.09003 * 109.46780 * 269.97311 * 1 2 3 29 29 H 1.09000 * 109.46976 * 29.97136 * 1 2 3 30 30 H 1.09000 * 109.47056 * 149.97402 * 1 2 3 31 31 H 1.08003 * 126.16578 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.46657 * 329.69430 * 6 5 4 33 33 H 1.08990 * 109.47366 * 209.69026 * 6 5 4 34 34 H 1.09000 * 113.47601 * 253.47443 * 8 7 6 35 35 H 1.08995 * 113.48058 * 23.87509 * 8 7 6 36 36 H 1.09003 * 114.17011 * 87.64881 * 9 8 7 37 37 H 1.09001 * 109.47217 * 64.94396 * 12 10 9 38 38 H 1.09002 * 109.46992 * 184.93947 * 12 10 9 39 39 H 1.09007 * 109.47252 * 304.94048 * 12 10 9 40 40 H 0.97000 * 120.00508 * 335.00258 * 13 10 9 41 41 H 1.09009 * 109.46571 * 300.00403 * 16 14 13 42 42 H 1.09002 * 109.47277 * 59.99736 * 16 14 13 43 43 H 0.96999 * 120.00055 * 180.02562 * 21 20 18 44 44 H 1.09002 * 113.47217 * 336.05898 * 26 7 6 45 45 H 1.08994 * 113.47827 * 106.47125 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0805 0.0000 4 7 3.5782 0.6478 0.0052 5 6 3.5765 -0.6548 -0.0008 6 6 4.8004 -1.5341 -0.0015 7 7 5.1986 -1.8201 1.3834 8 6 6.5194 -2.4746 1.4292 9 6 6.8571 -1.5878 2.6358 10 6 8.2881 -1.0461 2.6342 11 1 8.4765 -0.5205 1.6982 12 6 8.4690 -0.0802 3.8069 13 7 9.2315 -2.1589 2.7681 14 6 10.4905 -2.0345 2.3034 15 8 10.8425 -1.0012 1.7748 16 6 11.4609 -3.1793 2.4405 17 16 13.0559 -2.7071 1.7270 18 6 13.9701 -4.1852 2.0165 19 1 13.4989 -5.0245 2.5063 20 6 15.2958 -4.2713 1.6140 21 7 15.9789 -5.3754 1.8307 22 14 16.1106 -2.8199 0.7661 23 1 16.7362 -1.9390 1.7848 24 1 17.1534 -3.3143 -0.1685 25 1 15.0899 -2.0528 0.0079 26 6 5.8240 -0.6396 2.0081 27 8 2.3075 -1.0840 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 1.9822 2.1112 0.0004 32 1 5.6146 -1.0231 -0.5154 33 1 4.5761 -2.4687 -0.5154 34 1 6.4697 -3.5363 1.6708 35 1 7.1359 -2.2701 0.5539 36 1 6.5538 -2.0058 3.5957 37 1 8.3670 -0.6250 4.7454 38 1 9.4593 0.3723 3.7553 39 1 7.7097 0.7002 3.7553 40 1 8.9501 -2.9852 3.1911 41 1 11.5921 -3.4199 3.4956 42 1 11.0711 -4.0510 1.9149 43 1 16.9054 -5.4355 1.5498 44 1 6.2554 0.0554 1.2877 45 1 5.1847 -0.1456 2.7397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506581618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:43 Heat of formation + Delta-G solvation = 19.994696 kcal Electronic energy + Delta-G solvation = -25990.397302 eV Core-core repulsion = 22137.107422 eV Total energy + Delta-G solvation = -3853.289880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.69203 -40.88523 -39.12078 -35.49506 -35.03577 -33.39258 -32.44139 -31.85093 -30.50291 -28.64642 -27.13836 -26.26544 -25.61062 -24.96806 -22.76881 -22.20045 -21.20220 -20.47816 -19.97671 -17.92338 -17.44535 -17.25874 -16.57760 -16.48585 -16.00350 -15.37250 -15.23295 -15.05406 -14.92294 -14.77531 -14.16975 -13.91015 -13.65601 -13.57558 -13.34885 -13.31164 -13.06580 -12.84642 -12.82871 -12.78456 -12.34891 -12.05721 -11.81088 -11.69169 -11.33115 -11.24888 -11.08546 -11.00983 -10.89413 -10.84657 -10.58742 -9.85886 -9.58011 -9.45723 -9.03604 -9.01695 -8.95443 -8.50091 -6.91839 -6.29100 -4.00766 1.02355 2.19571 2.30526 2.75040 2.97433 3.26576 3.33433 3.45563 3.50313 3.61325 3.71470 4.10141 4.30749 4.32215 4.33456 4.52216 4.59346 4.71805 4.76367 4.86652 4.88420 4.90792 4.94167 5.07512 5.10038 5.11427 5.15697 5.24458 5.35297 5.36475 5.42577 5.46054 5.59696 5.64829 5.72339 5.75258 5.76953 5.91236 5.98192 6.01816 6.17280 6.44907 6.58306 7.36171 7.62714 7.93945 8.41521 8.50145 9.17170 10.80124 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027351 B = 0.001791 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.465642 B =15629.021068 C =15771.950735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.049 4.049 3 C -0.044 4.044 4 N -0.475 5.475 5 C 0.199 3.801 6 C 0.113 3.887 7 N -0.470 5.470 8 C 0.008 3.992 9 C -0.123 4.123 10 C 0.156 3.844 11 H 0.088 0.912 12 C -0.163 4.163 13 N -0.731 5.731 14 C 0.532 3.468 15 O -0.520 6.520 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.014 3.986 27 O -0.195 6.195 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.183 0.817 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.399 0.601 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.082 0.918 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.692 9.126 -0.608 32.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C -0.183 4.183 4 N -0.204 5.204 5 C -0.008 4.008 6 C -0.016 4.016 7 N -0.194 5.194 8 C -0.120 4.120 9 C -0.142 4.142 10 C 0.050 3.950 11 H 0.106 0.894 12 C -0.221 4.221 13 N -0.385 5.385 14 C 0.318 3.682 15 O -0.394 6.394 16 C -0.275 4.275 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.116 4.116 27 O -0.081 6.081 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.200 0.800 32 H 0.107 0.893 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.233 0.767 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -31.007 10.740 -1.259 32.839 hybrid contribution -0.042 -1.134 0.060 1.136 sum -31.049 9.607 -1.199 32.524 Atomic orbital electron populations 1.20279 0.83954 1.04386 1.03882 1.23518 0.95136 0.84640 1.06915 1.23079 0.87750 1.00379 1.07053 1.70441 1.23215 1.09080 1.17676 1.25862 0.84130 0.89947 1.00833 1.21051 0.89329 0.97705 0.93488 1.69065 1.23973 1.13514 1.12833 1.23865 0.88893 1.00826 0.98450 1.23071 0.94098 0.97659 0.99408 1.20838 0.86183 0.87819 1.00146 0.89401 1.22156 1.02829 0.99198 0.97935 1.46000 1.11627 1.17818 1.63042 1.20276 0.81889 0.88924 0.77109 1.90700 1.76777 1.29800 1.42152 1.23285 0.99170 0.99412 1.05627 1.84791 1.04292 1.24593 1.77915 1.22323 0.99321 0.99587 1.45708 0.89396 1.24711 0.96064 0.96027 0.94477 1.69937 1.10103 1.26185 1.45457 0.86736 0.81115 0.83079 0.80931 1.19218 1.19955 1.15934 1.23876 0.95077 0.93549 0.99050 1.84401 1.17768 1.36479 1.69444 0.89712 0.88947 0.90307 0.79995 0.89274 0.87493 0.88788 0.90240 0.87256 0.92354 0.91632 0.91810 0.76670 0.88532 0.88495 0.91952 0.90000 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.26 10.43 36.01 0.38 0.11 16 2 C -0.05 -0.39 7.39 -35.69 -0.26 -0.66 16 3 C -0.04 -0.39 11.80 -17.77 -0.21 -0.60 16 4 N -0.47 -5.25 11.29 -11.10 -0.13 -5.37 16 5 C 0.20 2.05 7.49 -12.95 -0.10 1.96 16 6 C 0.11 0.94 5.45 -4.97 -0.03 0.91 16 7 N -0.47 -4.06 6.40 -245.91 -1.57 -5.63 16 8 C 0.01 0.06 7.16 -7.55 -0.05 0.01 16 9 C -0.12 -0.96 3.49 -90.03 -0.31 -1.27 16 10 C 0.16 1.59 2.34 -67.93 -0.16 1.43 16 11 H 0.09 1.08 7.44 -51.93 -0.39 0.69 16 12 C -0.16 -1.65 9.47 37.16 0.35 -1.30 16 13 N -0.73 -8.49 4.96 -53.81 -0.27 -8.75 16 14 C 0.53 8.96 7.81 -10.99 -0.09 8.88 16 15 O -0.52 -10.80 15.53 5.55 0.09 -10.71 16 16 C -0.12 -2.33 6.16 36.00 0.22 -2.11 16 17 S -0.14 -3.56 18.55 -107.50 -1.99 -5.56 16 18 C -0.52 -14.93 10.04 30.94 0.31 -14.62 16 19 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.46 13.97 55.49 0.78 -25.68 16 22 Si 0.86 21.72 27.74 -169.99 -4.72 17.00 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 26 C 0.01 0.12 6.87 -7.49 -0.05 0.06 16 27 O -0.19 -2.01 10.78 5.34 0.06 -1.95 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.18 1.07 8.06 -52.48 -0.42 0.65 16 32 H 0.09 0.70 7.56 -51.93 -0.39 0.30 16 33 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.65 7.73 -51.93 -0.40 0.25 16 36 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 40 H 0.40 3.56 8.60 -40.82 -0.35 3.21 16 41 H 0.10 1.69 8.14 -51.91 -0.42 1.27 16 42 H 0.10 1.68 8.14 -51.92 -0.42 1.25 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.08 0.74 7.56 -51.93 -0.39 0.34 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 392.56 15.07 5.92 5.92 Total: -1.00 -35.77 392.56 -8.94 -44.71 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -7.00 Total: 0.52 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -0.10 Total: -4.49 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -1.19 Total: -45.44 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.14 Total: -12.66 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.72 Total: 17.00 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.77 -8.94 -44.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506581618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.702 kcal (2) G-P(sol) polarization free energy of solvation -35.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds