Wall clock time and date at job start Tue Mar 31 2020 22:45:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.35457 * 128.00421 * 2 1
4 4 O 1.34042 * 106.44059 * 180.23192 * 3 2 1
5 5 N 1.20918 * 111.56873 * 359.74003 * 4 3 2
6 6 C 1.30171 * 111.60844 * 0.02562 * 5 4 3
7 7 C 1.50703 * 126.80285 * 179.97438 * 6 5 4
8 8 N 1.46897 * 109.47387 * 90.01963 * 7 6 5
9 9 C 1.46896 * 111.00049 * 179.97438 * 8 7 6
10 10 C 1.53001 * 109.47293 * 179.97438 * 9 8 7
11 11 H 1.09004 * 112.90092 * 43.75051 * 10 9 8
12 12 C 1.53778 * 113.61263 * 174.99736 * 10 9 8
13 13 C 1.53787 * 87.08035 * 139.98349 * 12 10 9
14 14 H 1.08994 * 113.61447 * 220.02014 * 13 12 10
15 15 N 1.46496 * 113.61210 * 89.11438 * 13 12 10
16 16 C 1.34774 * 120.00099 * 155.00440 * 15 13 12
17 17 O 1.21282 * 120.00036 * 359.97438 * 16 15 13
18 18 C 1.50698 * 120.00600 * 180.02562 * 16 15 13
19 19 S 1.81001 * 109.47417 * 179.97438 * 18 16 15
20 20 C 1.76207 * 99.99999 * 179.97438 * 19 18 16
21 21 H 1.08002 * 119.99515 * 0.02562 * 20 19 18
22 22 C 1.38794 * 119.99939 * 180.02562 * 20 19 18
23 23 N 1.31633 * 119.99986 * 359.97438 * 22 20 19
24 24 Si 1.86803 * 120.00033 * 180.02562 * 22 20 19
25 25 H 1.48502 * 109.46881 * 359.97438 * 24 22 20
26 26 H 1.48492 * 109.47330 * 119.99633 * 24 22 20
27 27 H 1.48496 * 109.46702 * 239.99937 * 24 22 20
28 28 C 1.53778 * 113.61526 * 272.49822 * 10 9 8
29 29 H 1.08994 * 109.47398 * 270.16710 * 1 2 3
30 30 H 1.09000 * 109.47312 * 30.17575 * 1 2 3
31 31 H 1.09000 * 109.46725 * 150.17311 * 1 2 3
32 32 H 1.07996 * 126.77700 * 359.95192 * 3 2 1
33 33 H 1.08998 * 109.46873 * 330.01745 * 7 6 5
34 34 H 1.08996 * 109.46647 * 210.02020 * 7 6 5
35 35 H 1.00893 * 111.00133 * 56.04001 * 8 7 6
36 36 H 1.09008 * 109.47110 * 59.99816 * 9 8 7
37 37 H 1.09000 * 109.47263 * 299.99714 * 9 8 7
38 38 H 1.08998 * 113.61879 * 25.43831 * 12 10 9
39 39 H 1.08999 * 113.61887 * 254.52938 * 12 10 9
40 40 H 0.97002 * 120.00490 * 335.00104 * 15 13 12
41 41 H 1.09005 * 109.46821 * 300.00153 * 18 16 15
42 42 H 1.09008 * 109.47008 * 59.99541 * 18 16 15
43 43 H 0.97001 * 120.00000 * 179.97438 * 23 22 20
44 44 H 1.08993 * 113.61229 * 105.47191 * 28 10 9
45 45 H 1.09000 * 113.61263 * 334.56841 * 28 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3411 1.0674 0.0000
4 8 3.5876 0.5747 -0.0052
5 7 3.5878 -0.6345 -0.0031
6 6 2.3776 -1.1139 0.0030
7 6 1.9828 -2.5683 0.0068
8 7 1.8603 -3.0390 1.3929
9 6 1.4752 -4.4559 1.4357
10 6 1.3585 -4.9090 2.8924
11 1 0.8383 -4.1863 3.5210
12 6 0.8404 -6.3483 3.0501
13 6 1.8698 -6.5112 4.1810
14 1 2.3658 -7.4817 4.1835
15 7 1.3586 -6.1285 5.4995
16 6 1.9029 -6.6579 6.6129
17 8 2.8157 -7.4515 6.5234
18 6 1.3767 -6.2649 7.9693
19 16 2.3055 -7.1392 9.2534
20 6 1.5054 -6.5099 10.6918
21 1 0.6977 -5.7997 10.5932
22 6 1.9132 -6.9269 11.9512
23 7 2.8973 -7.7929 12.0711
24 14 1.0645 -6.2603 13.4760
25 1 -0.0021 -5.3090 13.0729
26 1 0.4640 -7.3836 14.2393
27 1 2.0575 -5.5579 14.3279
28 6 2.6852 -5.4045 3.4916
29 1 -0.3634 0.0030 1.0276
30 1 -0.3634 0.8884 -0.5166
31 1 -0.3633 -0.8916 -0.5112
32 1 2.0576 2.1094 -0.0007
33 1 2.7443 -3.1528 -0.5095
34 1 1.0265 -2.6864 -0.5029
35 1 1.2070 -2.4712 1.9112
36 1 2.2329 -5.0539 0.9291
37 1 0.5153 -4.5868 0.9361
38 1 1.0386 -6.9810 2.1850
39 1 -0.1937 -6.4054 3.3896
40 1 0.6283 -5.4941 5.5712
41 1 1.4914 -5.1895 8.1057
42 1 0.3216 -6.5296 8.0404
43 1 3.1825 -8.0840 12.9514
44 1 3.1402 -4.6996 4.1873
45 1 3.3877 -5.7791 2.7470
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001506875103.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:45:08
Heat of formation + Delta-G solvation = 13.070244 kcal
Electronic energy + Delta-G solvation = -25368.802075 eV
Core-core repulsion = 21515.211929 eV
Total energy + Delta-G solvation = -3853.590146 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-45.90026 -41.23398 -39.48766 -37.52354 -35.38387 -34.59328 -34.21818 -33.10301
-30.87686 -29.28216 -28.77037 -27.67396 -26.63190 -25.89508 -23.13744 -22.54446
-22.26247 -22.02667 -20.21823 -19.82921 -18.56680 -18.41932 -17.91518 -17.09678
-16.88762 -16.87348 -16.47817 -16.28563 -15.79773 -15.64203 -15.36989 -15.01964
-14.67121 -14.55381 -14.37811 -14.06469 -13.92879 -13.85111 -13.41364 -13.32415
-13.18838 -13.16546 -12.93981 -12.91309 -12.64657 -12.59948 -11.97444 -11.84923
-11.70599 -11.48030 -11.16689 -11.16273 -10.97623 -10.93129 -10.27797 -10.24799
-10.03115 -9.39551 -8.67607 -8.35187 -6.13547 0.61498 1.21175 1.26410
1.41387 1.46798 1.57993 1.59252 2.24912 2.28653 2.46006 2.98967
3.07073 3.29439 3.31599 3.58282 3.60669 3.80369 3.88223 3.98090
3.99867 4.02638 4.19671 4.29998 4.36079 4.48169 4.49938 4.57466
4.66599 4.70678 4.77520 4.84357 4.84408 4.88238 4.91930 4.92739
4.99162 5.12422 5.22524 5.30598 5.36063 5.41627 5.68086 5.95562
6.19642 6.37558 6.51928 7.06036 7.25873 7.37142 8.74350
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.015287 B = 0.001695 C = 0.001601
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1831.162987 B =16518.791324 C =17480.471651
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C -0.208 4.208
3 C -0.059 4.059
4 O 0.084 5.916
5 N -0.392 5.392
6 C 0.006 3.994
7 C 0.141 3.859
8 N -0.695 5.695
9 C 0.076 3.924
10 C -0.091 4.091
11 H 0.097 0.903
12 C -0.118 4.118
13 C 0.103 3.897
14 H 0.075 0.925
15 N -0.694 5.694
16 C 0.535 3.465
17 O -0.567 6.567
18 C -0.129 4.129
19 S -0.154 6.154
20 C -0.545 4.545
21 H 0.084 0.916
22 C 0.011 3.989
23 N -0.912 5.912
24 Si 1.001 2.999
25 H -0.256 1.256
26 H -0.273 1.273
27 H -0.274 1.274
28 C -0.140 4.140
29 H 0.080 0.920
30 H 0.089 0.911
31 H 0.074 0.926
32 H 0.255 0.745
33 H 0.077 0.923
34 H 0.076 0.924
35 H 0.347 0.653
36 H 0.072 0.928
37 H 0.055 0.945
38 H 0.110 0.890
39 H 0.089 0.911
40 H 0.416 0.584
41 H 0.109 0.891
42 H 0.112 0.888
43 H 0.271 0.729
44 H 0.047 0.953
45 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.168 17.991 -30.088 37.109
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.213 4.213
3 C -0.139 4.139
4 O 0.019 5.981
5 N -0.097 5.097
6 C -0.153 4.153
7 C 0.012 3.988
8 N -0.329 5.329
9 C -0.052 4.052
10 C -0.110 4.110
11 H 0.115 0.885
12 C -0.157 4.157
13 C -0.003 4.003
14 H 0.093 0.907
15 N -0.347 5.347
16 C 0.321 3.679
17 O -0.446 6.446
18 C -0.280 4.280
19 S 0.073 5.927
20 C -0.693 4.693
21 H 0.102 0.898
22 C -0.193 4.193
23 N -0.548 5.548
24 Si 0.822 3.178
25 H -0.179 1.179
26 H -0.199 1.199
27 H -0.200 1.200
28 C -0.179 4.179
29 H 0.099 0.901
30 H 0.108 0.892
31 H 0.093 0.907
32 H 0.271 0.729
33 H 0.096 0.904
34 H 0.094 0.906
35 H 0.166 0.834
36 H 0.091 0.909
37 H 0.073 0.927
38 H 0.129 0.871
39 H 0.107 0.893
40 H 0.253 0.747
41 H 0.127 0.873
42 H 0.130 0.870
43 H 0.080 0.920
44 H 0.066 0.934
45 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -8.659 15.891 -30.108 35.128
hybrid contribution -2.654 1.468 1.051 3.210
sum -11.313 17.359 -29.057 35.688
Atomic orbital electron populations
1.20191 0.85254 1.04281 1.03491 1.21748 1.00021 0.90983 1.08527
1.26617 0.81938 1.02901 1.02472 1.84798 1.30785 1.15192 1.67290
1.73883 1.23992 0.92055 1.19776 1.23754 0.88675 0.99257 1.03616
1.20125 1.01206 0.86497 0.90957 1.60322 1.56157 1.04269 1.12111
1.21945 0.99903 0.87611 0.95757 1.22476 0.96029 0.96364 0.96132
0.88492 1.23276 0.98926 0.96329 0.97156 1.21999 0.97795 0.98560
0.81924 0.90692 1.45404 1.38289 1.46888 1.04109 1.20104 0.81830
0.79909 0.86083 1.90688 1.30681 1.35776 1.87411 1.23368 1.04773
1.05233 0.94599 1.85618 1.49010 1.59766 0.98288 1.23241 1.22455
1.31212 0.92381 0.89820 1.26162 0.95710 0.94923 1.02534 1.70197
1.27889 1.31449 1.25295 0.84880 0.78188 0.78261 0.76450 1.17921
1.19876 1.19988 1.23404 0.97525 0.97491 0.99466 0.90135 0.89196
0.90695 0.72906 0.90439 0.90637 0.83414 0.90912 0.92656 0.87148
0.89281 0.74699 0.87322 0.86983 0.91998 0.93363 0.89165
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.30 10.37 71.24 0.74 0.43 16
2 C -0.21 -2.25 6.32 -19.73 -0.12 -2.37 16
3 C -0.06 -0.56 12.27 67.18 0.82 0.26 16
4 O 0.08 1.51 11.20 71.62 0.80 2.31 16
5 N -0.39 -8.64 12.07 -49.56 -0.60 -9.23 16
6 C 0.01 0.10 6.84 43.58 0.30 0.40 16
7 C 0.14 1.85 6.19 85.56 0.53 2.38 16
8 N -0.70 -9.47 6.49 -517.93 -3.36 -12.83 16
9 C 0.08 0.82 5.52 86.30 0.48 1.30 16
10 C -0.09 -1.18 3.78 -10.27 -0.04 -1.22 16
11 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16
12 C -0.12 -1.52 7.39 31.12 0.23 -1.29 16
13 C 0.10 2.32 4.32 45.52 0.20 2.52 16
14 H 0.07 2.13 7.47 -2.39 -0.02 2.11 16
15 N -0.69 -17.70 5.26 -440.04 -2.32 -20.01 16
16 C 0.53 20.20 7.85 87.66 0.69 20.89 16
17 O -0.57 -27.20 15.46 -3.04 -0.05 -27.24 16
18 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16
19 S -0.15 -8.69 20.57 -56.49 -1.16 -9.85 16
20 C -0.55 -31.39 9.50 67.95 0.65 -30.74 16
21 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16
22 C 0.01 0.65 5.49 84.86 0.47 1.11 16
23 N -0.91 -56.59 13.22 21.65 0.29 -56.30 16
24 Si 1.00 43.85 29.55 68.60 2.03 45.88 16
25 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16
26 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16
27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16
28 C -0.14 -2.88 7.43 31.12 0.23 -2.65 16
29 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16
30 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16
31 H 0.07 0.24 7.65 -2.39 -0.02 0.22 16
32 H 0.26 -0.09 8.06 -2.91 -0.02 -0.11 16
33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16
34 H 0.08 0.61 7.65 -2.39 -0.02 0.59 16
35 H 0.35 4.08 8.72 -89.70 -0.78 3.29 16
36 H 0.07 0.88 7.84 -2.38 -0.02 0.86 16
37 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16
38 H 0.11 1.12 8.10 -2.39 -0.02 1.10 16
39 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16
40 H 0.42 7.55 8.70 -92.71 -0.81 6.74 16
41 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16
42 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16
43 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16
44 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16
45 H 0.09 1.81 7.89 -2.39 -0.02 1.79 16
Total: -1.00 -84.44 396.05 0.66 -83.78
By element:
Atomic # 1 Polarization: 17.77 SS G_CDS: -0.57 Total: 17.20 kcal
Atomic # 6 Polarization: -19.29 SS G_CDS: 5.60 Total: -13.69 kcal
Atomic # 7 Polarization: -92.39 SS G_CDS: -5.99 Total: -98.38 kcal
Atomic # 8 Polarization: -25.68 SS G_CDS: 0.75 Total: -24.93 kcal
Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal
Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal
Total: -84.44 0.66 -83.78 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001506875103.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 96.849 kcal
(2) G-P(sol) polarization free energy of solvation -84.438 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.410 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.660 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.779 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.070 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds