Wall clock time and date at job start Tue Mar 31 2020 22:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35453 * 126.78153 * 2 1 4 4 C 1.41379 * 103.98801 * 179.74005 * 3 2 1 5 5 C 1.50697 * 126.80088 * 180.24386 * 4 3 2 6 6 N 1.46896 * 109.47146 * 95.81285 * 5 4 3 7 7 C 1.46900 * 111.00367 * 163.54383 * 6 5 4 8 8 C 1.52997 * 109.47397 * 189.99664 * 7 6 5 9 9 N 1.46504 * 109.47242 * 179.97438 * 8 7 6 10 10 C 1.34765 * 120.00188 * 180.02562 * 9 8 7 11 11 O 1.21283 * 120.00246 * 0.02562 * 10 9 8 12 12 C 1.50702 * 120.00305 * 180.02562 * 10 9 8 13 13 S 1.81003 * 109.47319 * 180.02562 * 12 10 9 14 14 C 1.76202 * 99.99746 * 180.02562 * 13 12 10 15 15 H 1.07997 * 120.00038 * 359.97438 * 14 13 12 16 16 C 1.38798 * 119.99715 * 179.97438 * 14 13 12 17 17 N 1.31629 * 120.00283 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99964 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47085 * 59.99867 * 18 16 14 20 20 H 1.48502 * 109.47473 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47464 * 300.00060 * 18 16 14 22 22 C 1.46897 * 110.99824 * 287.49947 * 6 5 4 23 23 C 1.53004 * 117.50048 * 142.29822 * 22 6 5 24 24 C 1.52995 * 59.99975 * 252.50977 * 23 22 6 25 25 N 1.30177 * 106.39552 * 0.22679 * 4 3 2 26 26 O 1.20928 * 111.60676 * 359.97438 * 25 4 3 27 27 H 1.09002 * 109.46795 * 90.00079 * 1 2 3 28 28 H 1.09002 * 109.47193 * 209.99850 * 1 2 3 29 29 H 1.08997 * 109.46732 * 330.00145 * 1 2 3 30 30 H 1.07997 * 128.00323 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47153 * 215.81481 * 5 4 3 32 32 H 1.08997 * 109.47350 * 335.81078 * 5 4 3 33 33 H 1.09000 * 109.47278 * 310.00218 * 7 6 5 34 34 H 1.09003 * 109.47050 * 69.99620 * 7 6 5 35 35 H 1.08995 * 109.47747 * 300.00223 * 8 7 6 36 36 H 1.08998 * 109.46694 * 60.00245 * 8 7 6 37 37 H 0.96999 * 119.99487 * 0.02562 * 9 8 7 38 38 H 1.09000 * 109.47386 * 300.00393 * 12 10 9 39 39 H 1.08998 * 109.46930 * 60.00293 * 12 10 9 40 40 H 0.96997 * 120.00687 * 180.02562 * 17 16 14 41 41 H 1.09002 * 115.55307 * 288.00154 * 22 6 5 42 42 H 1.09003 * 117.49801 * 359.97438 * 23 22 6 43 43 H 1.09000 * 117.50184 * 145.02005 * 23 22 6 44 44 H 1.09008 * 117.49602 * 252.50940 * 24 23 22 45 45 H 1.08997 * 117.50460 * 107.48637 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3181 1.0849 0.0000 4 6 3.6214 0.5372 0.0062 5 6 4.9211 1.2999 0.0140 6 7 5.4071 1.4251 1.3946 7 6 6.8264 1.8031 1.4209 8 6 7.3602 1.6817 2.8496 9 7 8.7758 2.0581 2.8757 10 6 9.4602 2.0265 4.0362 11 8 8.9044 1.6860 5.0590 12 6 10.9162 2.4142 4.0632 13 16 11.5481 2.2691 5.7531 14 6 13.2188 2.7680 5.4989 15 1 13.5557 3.0434 4.5105 16 6 14.1018 2.8071 6.5691 17 7 13.6911 2.4720 7.7739 18 14 15.8731 3.3354 6.2996 19 1 15.9005 4.7190 5.7611 20 1 16.6044 3.2930 7.5913 21 1 16.5226 2.4148 5.3321 22 6 4.5930 2.3831 2.1544 23 6 4.3047 2.0579 3.6214 24 6 3.1916 1.9391 2.5785 25 7 3.4764 -0.7565 0.0043 26 8 2.3095 -1.0737 -0.0016 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 2.0346 2.1270 0.0004 31 1 5.6594 0.7658 -0.5841 32 1 4.7623 2.2928 -0.4067 33 1 7.3910 1.1409 0.7646 34 1 6.9347 2.8323 1.0788 35 1 6.7956 2.3439 3.5059 36 1 7.2519 0.6524 3.1916 37 1 9.2204 2.3300 2.0576 38 1 11.4808 1.7523 3.4065 39 1 11.0244 3.4437 3.7216 40 1 14.3080 2.4996 8.5219 41 1 4.7299 3.4313 1.8885 42 1 4.7188 1.1328 4.0226 43 1 4.2521 2.8921 4.3210 44 1 2.4066 2.6953 2.5919 45 1 2.8737 0.9362 2.2936 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567437687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:43 Heat of formation + Delta-G solvation = 32.896522 kcal Electronic energy + Delta-G solvation = -25999.484289 eV Core-core repulsion = 22146.753875 eV Total energy + Delta-G solvation = -3852.730414 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.84596 -40.72328 -39.73305 -36.32073 -35.71261 -34.65476 -34.57806 -33.91306 -31.63905 -29.52609 -28.55012 -27.67519 -26.66290 -24.10406 -23.84467 -23.13668 -21.89602 -21.66342 -20.67481 -19.83450 -18.54219 -18.09600 -17.86743 -17.36382 -17.01118 -16.88104 -16.83430 -16.26692 -16.07840 -15.52717 -15.30362 -14.98556 -14.74287 -14.49711 -14.41279 -14.27654 -13.94459 -13.88949 -13.58085 -13.25237 -13.16964 -12.92481 -12.86774 -12.78379 -12.62663 -12.51830 -12.41529 -11.88427 -11.74738 -11.51053 -11.15265 -11.12648 -10.99307 -10.79691 -10.27835 -10.14264 -10.11570 -9.48500 -8.67069 -8.34132 -6.12801 0.61988 1.22131 1.30207 1.44325 1.47225 1.56781 1.60433 2.17375 2.28049 2.34704 2.81952 2.87763 2.99853 3.25595 3.33431 3.61671 3.80658 3.95991 3.98627 4.01027 4.06785 4.19069 4.24645 4.30123 4.32931 4.41467 4.45069 4.50624 4.55177 4.65841 4.74837 4.76158 4.77352 4.90369 4.93002 4.97009 5.05897 5.10364 5.25943 5.32130 5.37726 5.41750 5.85285 6.02727 6.19827 6.49725 7.06773 7.24009 7.43156 8.74880 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036157 B = 0.001678 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.204904 B =16683.813661 C =16956.497990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.038 4.038 3 C -0.222 4.222 4 C 0.024 3.976 5 C 0.139 3.861 6 N -0.524 5.524 7 C 0.063 3.937 8 C 0.130 3.870 9 N -0.711 5.711 10 C 0.533 3.467 11 O -0.567 6.567 12 C -0.128 4.128 13 S -0.154 6.154 14 C -0.548 4.548 15 H 0.084 0.916 16 C 0.013 3.987 17 N -0.912 5.912 18 Si 1.000 3.000 19 H -0.261 1.261 20 H -0.279 1.279 21 H -0.262 1.262 22 C 0.004 3.996 23 C -0.180 4.180 24 C -0.146 4.146 25 N -0.392 5.392 26 O 0.076 5.924 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.193 0.807 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.418 0.582 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.271 0.729 41 H 0.108 0.892 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.119 0.881 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.715 1.976 -23.359 36.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.101 4.101 3 C -0.244 4.244 4 C -0.136 4.136 5 C 0.011 3.989 6 N -0.250 5.250 7 C -0.065 4.065 8 C 0.006 3.994 9 N -0.366 5.366 10 C 0.319 3.681 11 O -0.445 6.445 12 C -0.279 4.279 13 S 0.073 5.927 14 C -0.696 4.696 15 H 0.102 0.898 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.821 3.179 19 H -0.186 1.186 20 H -0.204 1.204 21 H -0.187 1.187 22 C -0.105 4.105 23 C -0.218 4.218 24 C -0.183 4.183 25 N -0.099 5.099 26 O 0.011 5.989 27 H 0.120 0.880 28 H 0.105 0.895 29 H 0.129 0.871 30 H 0.210 0.790 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.255 0.745 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.092 0.908 43 H 0.120 0.880 44 H 0.137 0.863 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -27.820 -0.119 -21.299 35.037 hybrid contribution 1.722 1.811 -1.306 2.820 sum -26.098 1.692 -22.605 34.568 Atomic orbital electron populations 1.20538 0.81426 1.05804 1.05299 1.25224 0.97824 0.85502 1.01564 1.22639 0.90219 1.01927 1.09606 1.23619 0.98059 0.89697 1.02206 1.20299 0.90802 0.98828 0.88960 1.61352 1.01967 1.48565 1.13071 1.22115 0.87676 1.01631 0.95072 1.21180 0.80156 0.99933 0.98156 1.45598 1.11494 1.69326 1.10134 1.20089 0.88007 0.76523 0.83480 1.90699 1.70897 1.48150 1.34777 1.23362 0.95051 1.06214 1.03286 1.85620 1.10888 1.88958 1.07225 1.23186 0.95649 1.52529 0.98195 0.89782 1.26142 1.04532 0.94562 0.93919 1.70180 1.37774 1.46290 1.00559 0.84991 0.75815 0.79245 0.77855 1.18562 1.20430 1.18680 1.22525 0.97416 0.94502 0.96021 1.23024 1.03858 1.02971 0.91931 1.23075 0.91108 1.02629 1.01517 1.73879 0.97598 1.17875 1.20565 1.84805 1.11410 1.34537 1.68129 0.87980 0.89483 0.87147 0.79025 0.88903 0.89515 0.88636 0.91295 0.92110 0.93566 0.74504 0.87131 0.86915 0.92000 0.87512 0.90832 0.88015 0.86272 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.45 71.24 0.74 0.52 16 2 C -0.04 -0.45 7.49 25.04 0.19 -0.26 16 3 C -0.22 -2.54 8.23 22.40 0.18 -2.35 16 4 C 0.02 0.40 5.28 43.58 0.23 0.63 16 5 C 0.14 1.93 5.57 85.56 0.48 2.40 16 6 N -0.52 -8.90 4.59 -875.54 -4.01 -12.91 16 7 C 0.06 0.98 5.06 86.30 0.44 1.41 16 8 C 0.13 3.15 5.42 86.38 0.47 3.61 16 9 N -0.71 -18.15 5.56 -463.08 -2.57 -20.72 16 10 C 0.53 20.15 7.85 87.66 0.69 20.83 16 11 O -0.57 -27.31 15.86 -3.04 -0.05 -27.36 16 12 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 13 S -0.15 -8.67 20.57 -56.49 -1.16 -9.83 16 14 C -0.55 -31.48 9.50 67.95 0.65 -30.84 16 15 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 16 C 0.01 0.76 5.49 84.86 0.47 1.22 16 17 N -0.91 -56.52 13.22 21.65 0.29 -56.23 16 18 Si 1.00 43.72 29.55 68.60 2.03 45.75 16 19 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 20 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 21 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 22 C 0.00 0.06 4.28 44.92 0.19 0.25 16 23 C -0.18 -3.47 8.90 30.59 0.27 -3.20 16 24 C -0.15 -2.13 8.09 30.59 0.25 -1.88 16 25 N -0.39 -8.93 12.07 -49.54 -0.60 -9.53 16 26 O 0.08 1.48 11.20 71.55 0.80 2.28 16 27 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 30 H 0.19 1.06 8.06 -2.91 -0.02 1.04 16 31 H 0.09 1.28 7.80 -2.39 -0.02 1.26 16 32 H 0.09 0.77 8.05 -2.39 -0.02 0.75 16 33 H 0.10 1.29 7.86 -2.39 -0.02 1.28 16 34 H 0.07 0.78 8.12 -2.39 -0.02 0.76 16 35 H 0.06 1.63 6.37 -2.39 -0.02 1.62 16 36 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 37 H 0.42 7.23 8.47 -92.71 -0.79 6.44 16 38 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 39 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 40 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 41 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.08 1.47 6.00 -2.39 -0.01 1.45 16 Total: -1.00 -83.64 389.97 0.62 -83.03 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.22 Total: 17.82 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 5.68 Total: -12.29 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -6.90 Total: -99.39 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: 0.75 Total: -25.07 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -83.64 0.62 -83.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567437687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.924 kcal (2) G-P(sol) polarization free energy of solvation -83.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds