Wall clock time and date at job start Tue Mar 31 2020 22:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37470 * 122.44849 * 2 1 4 4 C 1.36648 * 113.29458 * 179.78254 * 3 2 1 5 5 C 1.46580 * 125.45763 * 180.19826 * 4 3 2 6 6 O 1.21696 * 120.00306 * 0.27373 * 5 4 3 7 7 N 1.34781 * 119.99840 * 180.27535 * 5 4 3 8 8 C 1.46507 * 119.99781 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.47344 * 325.00092 * 8 7 5 10 10 C 1.53004 * 109.46911 * 85.00098 * 8 7 5 11 11 C 1.52996 * 109.47063 * 204.99906 * 8 7 5 12 12 N 1.46903 * 109.47140 * 55.00080 * 11 8 7 13 13 C 1.46895 * 111.00091 * 179.97438 * 12 11 8 14 14 C 1.50704 * 109.47512 * 180.02562 * 13 12 11 15 15 O 1.21300 * 119.99293 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00478 * 180.02562 * 14 13 12 17 17 C 1.37093 * 120.00235 * 179.97438 * 16 14 13 18 18 H 1.08005 * 120.00021 * 359.97438 * 17 16 14 19 19 C 1.38945 * 120.00307 * 179.97438 * 17 16 14 20 20 N 1.31415 * 120.00070 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 119.99963 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47335 * 90.00024 * 21 19 17 23 23 H 1.48503 * 109.47366 * 210.00335 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99894 * 21 19 17 25 25 S 1.75827 * 109.08409 * 0.45552 * 4 3 2 26 26 C 1.33810 * 122.44875 * 180.28630 * 2 1 3 27 27 C 1.50707 * 124.52568 * 359.97438 * 26 2 1 28 28 H 1.09002 * 109.47152 * 269.71234 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.71335 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.71316 * 1 2 3 31 31 H 1.08000 * 123.35157 * 359.97438 * 3 2 1 32 32 H 0.96998 * 120.00278 * 359.97438 * 7 5 4 33 33 H 1.08998 * 109.46834 * 179.97438 * 10 8 7 34 34 H 1.08996 * 109.46971 * 299.99857 * 10 8 7 35 35 H 1.08997 * 109.47122 * 59.99858 * 10 8 7 36 36 H 1.08994 * 109.47370 * 175.00171 * 11 8 7 37 37 H 1.08997 * 109.47596 * 295.00326 * 11 8 7 38 38 H 1.00907 * 110.99953 * 56.04514 * 12 11 8 39 39 H 1.09003 * 109.47522 * 300.00207 * 13 12 11 40 40 H 1.09004 * 109.47174 * 60.00276 * 13 12 11 41 41 H 0.96996 * 119.99805 * 359.97438 * 16 14 13 42 42 H 0.97000 * 119.99569 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.47284 * 89.99329 * 27 26 2 44 44 H 1.09000 * 109.47096 * 210.00288 * 27 26 2 45 45 H 1.09005 * 109.46716 * 329.99710 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2446 1.1601 0.0000 4 6 3.5937 0.9427 0.0048 5 6 4.6231 1.9862 0.0101 6 8 4.3002 3.1595 0.0155 7 7 5.9273 1.6462 0.0089 8 6 6.9562 2.6891 0.0136 9 1 6.6122 3.5415 -0.5722 10 6 7.2245 3.1342 1.4527 11 6 8.2452 2.1367 -0.5981 12 7 7.9615 1.5998 -1.9357 13 6 9.1790 1.0600 -2.5554 14 6 8.8496 0.5201 -3.9233 15 8 7.7122 0.5789 -4.3407 16 7 9.8185 -0.0289 -4.6825 17 6 9.5187 -0.5204 -5.9266 18 1 8.5060 -0.4681 -6.2983 19 6 10.5177 -1.0859 -6.7095 20 7 10.2301 -1.5575 -7.9019 21 14 12.2693 -1.1758 -6.0670 22 1 12.4634 -2.4536 -5.3357 23 1 13.2188 -1.1087 -7.2069 24 1 12.5185 -0.0365 -5.1477 25 16 3.8969 -0.7892 -0.0039 26 6 2.2250 -1.1292 -0.0056 27 6 1.6355 -2.5162 -0.0120 28 1 -0.3633 -0.0052 1.0277 29 1 -0.3633 -0.8874 -0.5183 30 1 -0.3633 0.8926 -0.5094 31 1 1.8019 2.1452 -0.0004 32 1 6.1847 0.7110 0.0049 33 1 7.9903 3.9099 1.4562 34 1 6.3062 3.5278 1.8884 35 1 7.5685 2.2818 2.0385 36 1 8.9820 2.9361 -0.6762 37 1 8.6372 1.3420 0.0366 38 1 7.5370 2.3010 -2.5243 39 1 9.9221 1.8522 -2.6471 40 1 9.5779 0.2579 -1.9343 41 1 10.7279 -0.0762 -4.3485 42 1 10.9275 -1.9527 -8.4483 43 1 1.4929 -2.8456 -1.0412 44 1 2.3126 -3.2011 0.4984 45 1 0.6745 -2.5048 0.5023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569095789.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:57 Heat of formation + Delta-G solvation = -46.913842 kcal Electronic energy + Delta-G solvation = -26271.088949 eV Core-core repulsion = 22414.897698 eV Total energy + Delta-G solvation = -3856.191251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.94596 -38.65560 -38.37902 -36.66613 -34.35935 -33.73252 -32.56819 -31.67723 -31.04898 -29.76730 -27.78184 -26.25343 -25.04957 -23.83887 -23.07483 -21.42853 -20.62189 -19.40581 -18.85414 -18.33908 -18.08427 -16.78767 -16.17017 -15.92361 -15.38260 -15.22479 -14.89194 -14.67292 -14.55757 -14.18480 -14.04325 -13.95005 -13.45042 -13.29124 -13.20985 -13.12070 -12.78438 -12.70280 -12.60237 -12.25700 -12.11993 -12.02723 -11.93138 -11.87247 -11.73194 -11.68331 -11.17614 -11.04365 -10.93806 -10.61292 -10.06536 -9.98889 -9.58682 -9.16913 -8.73378 -8.62386 -8.50089 -8.23526 -8.18151 -6.32270 -3.83789 0.40269 1.34946 1.76687 2.20963 3.00687 3.05103 3.06141 3.13524 3.22177 3.72287 4.00092 4.09031 4.55528 4.63799 4.74221 4.81572 4.88013 5.00507 5.03510 5.17951 5.22809 5.23459 5.23929 5.35901 5.37023 5.40397 5.49613 5.50964 5.59112 5.61418 5.71111 5.74923 5.76695 5.88005 5.89667 6.00774 6.15286 6.29156 6.41455 6.99968 7.45870 7.49190 7.56832 8.13261 8.15837 8.58438 8.93870 9.41064 9.81350 10.80897 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011586 B = 0.002597 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.111270 B =10779.540424 C =12459.875765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.127 4.127 3 C -0.051 4.051 4 C -0.265 4.265 5 C 0.595 3.405 6 O -0.539 6.539 7 N -0.704 5.704 8 C 0.146 3.854 9 H 0.089 0.911 10 C -0.161 4.161 11 C 0.047 3.953 12 N -0.668 5.668 13 C 0.048 3.952 14 C 0.449 3.551 15 O -0.563 6.563 16 N -0.591 5.591 17 C -0.305 4.305 18 H 0.119 0.881 19 C 0.041 3.959 20 N -0.881 5.881 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.270 1.270 25 S 0.213 5.787 26 C -0.202 4.202 27 C -0.085 4.085 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.150 0.850 32 H 0.403 0.597 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.046 0.954 37 H 0.078 0.922 38 H 0.353 0.647 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.378 2.190 22.391 24.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.140 4.140 3 C -0.084 4.084 4 C -0.385 4.385 5 C 0.381 3.619 6 O -0.418 6.418 7 N -0.354 5.354 8 C 0.041 3.959 9 H 0.107 0.893 10 C -0.220 4.220 11 C -0.083 4.083 12 N -0.301 5.301 13 C -0.085 4.085 14 C 0.234 3.766 15 O -0.444 6.444 16 N -0.230 5.230 17 C -0.433 4.433 18 H 0.137 0.863 19 C -0.162 4.162 20 N -0.521 5.521 21 Si 0.707 3.293 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 S 0.482 5.518 26 C -0.322 4.322 27 C -0.144 4.144 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.168 0.832 32 H 0.238 0.762 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.173 0.827 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.143 1.442 22.116 24.374 hybrid contribution 0.893 1.028 -0.025 1.362 sum -9.250 2.470 22.091 24.077 Atomic orbital electron populations 1.20490 0.89568 1.02881 1.02125 1.18644 0.97782 0.91233 1.06320 1.20566 0.90999 0.99734 0.97127 1.24498 0.97961 0.97175 1.18874 1.16890 0.81753 0.87267 0.75960 1.90800 1.81808 1.18253 1.50959 1.45686 1.04728 1.10424 1.74600 1.20978 0.87124 0.91103 0.96685 0.89252 1.22147 1.02433 1.01573 0.95877 1.22328 0.95341 0.98904 0.91709 1.60060 1.26034 1.40928 1.03044 1.21716 0.91640 0.99567 0.95567 1.19704 0.86140 0.84169 0.86539 1.90584 1.20481 1.59977 1.73369 1.42201 1.08977 1.55062 1.16789 1.19429 0.99012 1.34976 0.89925 0.86299 1.25042 0.98384 0.97187 0.95586 1.69626 1.33945 1.39196 1.09365 0.86664 0.84765 0.78731 0.79160 1.19604 1.20196 1.19558 1.83115 1.02932 0.98055 1.67676 1.24064 0.98704 1.00338 1.09068 1.20390 1.00970 0.89799 1.03196 0.91375 0.91472 0.91349 0.83194 0.76221 0.91442 0.91747 0.92258 0.93618 0.90364 0.82706 0.93681 0.89437 0.79719 0.91611 0.90270 0.91113 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 9.56 36.01 0.34 -0.35 16 2 C -0.13 -1.32 5.78 -106.45 -0.62 -1.94 16 3 C -0.05 -0.61 9.79 -40.44 -0.40 -1.01 16 4 C -0.26 -3.45 6.45 -36.79 -0.24 -3.68 16 5 C 0.59 8.58 7.75 -12.89 -0.10 8.48 16 6 O -0.54 -9.23 16.50 5.19 0.09 -9.14 16 7 N -0.70 -8.67 4.80 -55.14 -0.26 -8.94 16 8 C 0.15 1.62 2.81 -67.93 -0.19 1.43 16 9 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 10 C -0.16 -1.46 9.48 37.16 0.35 -1.10 16 11 C 0.05 0.50 5.24 -3.82 -0.02 0.48 16 12 N -0.67 -9.81 5.85 -115.06 -0.67 -10.48 16 13 C 0.05 0.75 6.17 -4.98 -0.03 0.72 16 14 C 0.45 10.03 7.82 -10.99 -0.09 9.94 16 15 O -0.56 -15.04 15.78 5.54 0.09 -14.95 16 16 N -0.59 -13.91 5.09 -10.96 -0.06 -13.97 16 17 C -0.30 -8.59 10.16 -14.94 -0.15 -8.75 16 18 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 19 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 20 N -0.88 -25.72 13.96 55.50 0.77 -24.95 16 21 Si 0.88 19.21 27.73 -169.99 -4.71 14.50 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 25 S 0.21 2.32 22.10 -107.50 -2.38 -0.06 16 26 C -0.20 -2.03 6.28 -35.86 -0.23 -2.26 16 27 C -0.09 -0.62 9.67 36.01 0.35 -0.27 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.44 7.20 -51.93 -0.37 0.06 16 30 H 0.07 0.49 8.13 -51.93 -0.42 0.06 16 31 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.40 4.64 7.72 -40.82 -0.31 4.32 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.35 5.74 8.43 -39.29 -0.33 5.41 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.37 7.61 5.76 -40.82 -0.24 7.38 16 42 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.45 7.25 -51.93 -0.38 0.08 16 LS Contribution 392.25 15.07 5.91 5.91 Total: -1.00 -34.72 392.25 -8.98 -43.70 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -6.65 Total: 15.67 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.10 Total: 2.71 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.22 Total: -58.34 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: 0.17 Total: -24.10 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.50 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.38 Total: -0.06 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.72 -8.98 -43.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569095789.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.211 kcal (2) G-P(sol) polarization free energy of solvation -34.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds