Wall clock time and date at job start Tue Mar 31 2020 22:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37470 * 122.44849 * 2 1 4 4 C 1.36648 * 113.29458 * 179.78254 * 3 2 1 5 5 C 1.46580 * 125.45763 * 180.19826 * 4 3 2 6 6 O 1.21696 * 120.00306 * 0.27373 * 5 4 3 7 7 N 1.34781 * 119.99840 * 180.27535 * 5 4 3 8 8 C 1.46507 * 119.99781 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.47344 * 325.00092 * 8 7 5 10 10 C 1.53004 * 109.46911 * 85.00098 * 8 7 5 11 11 C 1.52996 * 109.47063 * 204.99906 * 8 7 5 12 12 N 1.46903 * 109.47140 * 55.00080 * 11 8 7 13 13 C 1.46895 * 111.00091 * 179.97438 * 12 11 8 14 14 C 1.50704 * 109.47512 * 180.02562 * 13 12 11 15 15 O 1.21300 * 119.99293 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00478 * 180.02562 * 14 13 12 17 17 C 1.37093 * 120.00235 * 179.97438 * 16 14 13 18 18 H 1.08005 * 120.00021 * 359.97438 * 17 16 14 19 19 C 1.38945 * 120.00307 * 179.97438 * 17 16 14 20 20 N 1.31415 * 120.00070 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 119.99963 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47335 * 90.00024 * 21 19 17 23 23 H 1.48503 * 109.47366 * 210.00335 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99894 * 21 19 17 25 25 S 1.75827 * 109.08409 * 0.45552 * 4 3 2 26 26 C 1.33810 * 122.44875 * 180.28630 * 2 1 3 27 27 C 1.50707 * 124.52568 * 359.97438 * 26 2 1 28 28 H 1.09002 * 109.47152 * 269.71234 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.71335 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.71316 * 1 2 3 31 31 H 1.08000 * 123.35157 * 359.97438 * 3 2 1 32 32 H 0.96998 * 120.00278 * 359.97438 * 7 5 4 33 33 H 1.08998 * 109.46834 * 179.97438 * 10 8 7 34 34 H 1.08996 * 109.46971 * 299.99857 * 10 8 7 35 35 H 1.08997 * 109.47122 * 59.99858 * 10 8 7 36 36 H 1.08994 * 109.47370 * 175.00171 * 11 8 7 37 37 H 1.08997 * 109.47596 * 295.00326 * 11 8 7 38 38 H 1.00907 * 110.99953 * 56.04514 * 12 11 8 39 39 H 1.09003 * 109.47522 * 300.00207 * 13 12 11 40 40 H 1.09004 * 109.47174 * 60.00276 * 13 12 11 41 41 H 0.96996 * 119.99805 * 359.97438 * 16 14 13 42 42 H 0.97000 * 119.99569 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.47284 * 89.99329 * 27 26 2 44 44 H 1.09000 * 109.47096 * 210.00288 * 27 26 2 45 45 H 1.09005 * 109.46716 * 329.99710 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2446 1.1601 0.0000 4 6 3.5937 0.9427 0.0048 5 6 4.6231 1.9862 0.0101 6 8 4.3002 3.1595 0.0155 7 7 5.9273 1.6462 0.0089 8 6 6.9562 2.6891 0.0136 9 1 6.6122 3.5415 -0.5722 10 6 7.2245 3.1342 1.4527 11 6 8.2452 2.1367 -0.5981 12 7 7.9615 1.5998 -1.9357 13 6 9.1790 1.0600 -2.5554 14 6 8.8496 0.5201 -3.9233 15 8 7.7122 0.5789 -4.3407 16 7 9.8185 -0.0289 -4.6825 17 6 9.5187 -0.5204 -5.9266 18 1 8.5060 -0.4681 -6.2983 19 6 10.5177 -1.0859 -6.7095 20 7 10.2301 -1.5575 -7.9019 21 14 12.2693 -1.1758 -6.0670 22 1 12.4634 -2.4536 -5.3357 23 1 13.2188 -1.1087 -7.2069 24 1 12.5185 -0.0365 -5.1477 25 16 3.8969 -0.7892 -0.0039 26 6 2.2250 -1.1292 -0.0056 27 6 1.6355 -2.5162 -0.0120 28 1 -0.3633 -0.0052 1.0277 29 1 -0.3633 -0.8874 -0.5183 30 1 -0.3633 0.8926 -0.5094 31 1 1.8019 2.1452 -0.0004 32 1 6.1847 0.7110 0.0049 33 1 7.9903 3.9099 1.4562 34 1 6.3062 3.5278 1.8884 35 1 7.5685 2.2818 2.0385 36 1 8.9820 2.9361 -0.6762 37 1 8.6372 1.3420 0.0366 38 1 7.5370 2.3010 -2.5243 39 1 9.9221 1.8522 -2.6471 40 1 9.5779 0.2579 -1.9343 41 1 10.7279 -0.0762 -4.3485 42 1 10.9275 -1.9527 -8.4483 43 1 1.4929 -2.8456 -1.0412 44 1 2.3126 -3.2011 0.4984 45 1 0.6745 -2.5048 0.5023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569095789.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:56 Heat of formation + Delta-G solvation = -73.905158 kcal Electronic energy + Delta-G solvation = -26272.259381 eV Core-core repulsion = 22414.897698 eV Total energy + Delta-G solvation = -3857.361683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.98747 -40.27646 -39.36665 -37.77762 -36.07112 -35.18111 -33.74215 -33.41281 -31.96433 -30.43630 -29.09802 -27.06533 -26.58529 -24.83352 -24.29388 -22.30933 -21.63613 -21.26052 -20.27926 -19.67091 -19.01541 -18.00907 -17.44629 -17.04856 -16.82158 -16.48139 -16.25020 -15.73930 -15.63962 -15.38246 -15.11335 -14.94041 -14.80372 -14.62854 -14.29440 -14.11612 -14.04502 -13.67233 -13.50712 -13.38280 -13.14107 -13.02698 -12.82872 -12.78402 -12.74447 -12.64054 -12.55226 -12.40829 -11.98144 -11.89386 -11.78121 -11.50739 -11.18549 -10.45000 -10.24463 -10.17935 -9.60691 -9.36061 -9.32924 -8.40982 -6.02103 -0.51140 0.47530 0.90474 1.30521 1.32496 1.36476 1.45288 1.97056 2.08156 2.20401 2.23648 2.71249 3.15456 3.38076 3.73630 3.82353 3.88915 4.11577 4.16762 4.21396 4.25532 4.35071 4.47685 4.56504 4.56979 4.63997 4.69628 4.70965 4.74163 4.76525 4.83750 4.89783 5.03393 5.07023 5.08987 5.26200 5.37685 5.46727 5.52865 5.53089 5.89258 6.02669 6.27782 6.45128 6.60207 6.88891 7.11393 7.40508 7.98011 8.76888 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011586 B = 0.002597 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.111270 B =10779.540424 C =12459.875765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.139 4.139 3 C -0.057 4.057 4 C -0.298 4.298 5 C 0.589 3.411 6 O -0.579 6.579 7 N -0.697 5.697 8 C 0.142 3.858 9 H 0.066 0.934 10 C -0.152 4.152 11 C 0.055 3.945 12 N -0.687 5.687 13 C 0.063 3.937 14 C 0.446 3.554 15 O -0.616 6.616 16 N -0.591 5.591 17 C -0.328 4.328 18 H 0.052 0.948 19 C -0.017 4.017 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.256 1.256 23 H -0.277 1.277 24 H -0.230 1.230 25 S 0.221 5.779 26 C -0.198 4.198 27 C -0.087 4.087 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.146 0.854 32 H 0.407 0.593 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.340 0.660 39 H 0.079 0.921 40 H 0.122 0.878 41 H 0.390 0.610 42 H 0.279 0.721 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.965 1.472 25.293 26.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.151 4.151 3 C -0.091 4.091 4 C -0.418 4.418 5 C 0.376 3.624 6 O -0.461 6.461 7 N -0.347 5.347 8 C 0.038 3.962 9 H 0.084 0.916 10 C -0.211 4.211 11 C -0.074 4.074 12 N -0.319 5.319 13 C -0.069 4.069 14 C 0.235 3.765 15 O -0.500 6.500 16 N -0.233 5.233 17 C -0.458 4.458 18 H 0.071 0.929 19 C -0.215 4.215 20 N -0.577 5.577 21 Si 0.787 3.213 22 H -0.180 1.180 23 H -0.202 1.202 24 H -0.153 1.153 25 S 0.490 5.510 26 C -0.318 4.318 27 C -0.145 4.145 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.164 0.836 32 H 0.243 0.757 33 H 0.106 0.894 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.158 0.842 39 H 0.097 0.903 40 H 0.139 0.861 41 H 0.226 0.774 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.703 0.718 25.063 26.230 hybrid contribution -0.030 1.235 -0.963 1.566 sum -7.733 1.953 24.100 25.385 Atomic orbital electron populations 1.20559 0.87451 1.03617 1.03266 1.18916 0.99336 0.90579 1.06265 1.20777 0.91128 1.00423 0.96789 1.24535 0.98101 0.98212 1.20967 1.17172 0.82636 0.87094 0.75493 1.90760 1.82473 1.19770 1.53107 1.45722 1.04422 1.10987 1.73545 1.21106 0.87057 0.90136 0.97911 0.91605 1.22066 1.02138 1.02721 0.94147 1.22399 0.95229 1.00336 0.89455 1.60062 1.26043 1.41375 1.04399 1.21651 0.92627 1.01338 0.91265 1.21080 0.84969 0.82005 0.88494 1.90567 1.22935 1.61387 1.75114 1.42019 1.10364 1.55486 1.15398 1.18988 0.96833 1.37339 0.92611 0.92947 1.26153 1.04447 0.95621 0.95320 1.69816 1.36312 1.40191 1.11365 0.85337 0.76092 0.80682 0.79213 1.17997 1.20215 1.15285 1.82960 1.04061 0.96357 1.67587 1.24515 0.98097 1.01728 1.07485 1.20543 1.02023 0.88036 1.03935 0.89962 0.90124 0.91257 0.83635 0.75702 0.89379 0.93740 0.90587 0.91175 0.88003 0.84229 0.90328 0.86061 0.77395 0.91170 0.89765 0.90034 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.24 9.56 71.24 0.68 -0.56 16 2 C -0.14 -2.83 5.78 -21.05 -0.12 -2.95 16 3 C -0.06 -1.43 9.79 21.72 0.21 -1.22 16 4 C -0.30 -8.08 6.45 24.08 0.16 -7.92 16 5 C 0.59 17.77 7.75 86.42 0.67 18.44 16 6 O -0.58 -21.06 16.50 -4.34 -0.07 -21.13 16 7 N -0.70 -17.20 4.80 -446.58 -2.14 -19.34 16 8 C 0.14 3.02 2.81 44.99 0.13 3.14 16 9 H 0.07 1.72 7.58 -2.39 -0.02 1.70 16 10 C -0.15 -2.47 9.48 71.98 0.68 -1.78 16 11 C 0.05 0.98 5.24 86.30 0.45 1.44 16 12 N -0.69 -18.90 5.85 -517.94 -3.03 -21.93 16 13 C 0.06 1.77 6.17 85.56 0.53 2.30 16 14 C 0.45 19.72 7.82 87.66 0.69 20.41 16 15 O -0.62 -34.18 15.78 -3.09 -0.05 -34.22 16 16 N -0.59 -27.36 5.09 -306.98 -1.56 -28.92 16 17 C -0.33 -19.21 10.16 84.04 0.85 -18.35 16 18 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 19 C -0.02 -0.94 5.50 84.92 0.47 -0.48 16 20 N -0.94 -56.53 13.96 21.66 0.30 -56.23 16 21 Si 0.97 38.20 27.73 68.60 1.90 40.10 16 22 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 23 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 24 H -0.23 -7.52 6.52 99.48 0.65 -6.87 16 25 S 0.22 4.78 22.10 -56.49 -1.25 3.53 16 26 C -0.20 -3.81 6.28 24.68 0.15 -3.65 16 27 C -0.09 -1.08 9.67 71.24 0.69 -0.39 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 0.89 7.20 -2.39 -0.02 0.87 16 30 H 0.07 0.94 8.13 -2.38 -0.02 0.92 16 31 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 32 H 0.41 9.16 7.72 -92.71 -0.72 8.44 16 33 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.10 1.41 8.14 -2.39 -0.02 1.40 16 38 H 0.34 10.96 8.43 -89.69 -0.76 10.20 16 39 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.39 14.72 5.76 -92.71 -0.53 14.19 16 42 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 43 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.10 0.86 7.25 -2.38 -0.02 0.84 16 Total: -1.00 -83.54 392.25 -0.69 -84.22 By element: Atomic # 1 Polarization: 46.52 SS G_CDS: -1.02 Total: 45.49 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 6.24 Total: 8.43 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -6.43 Total: -126.42 kcal Atomic # 8 Polarization: -55.23 SS G_CDS: -0.12 Total: -55.35 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 1.90 Total: 40.10 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -1.25 Total: 3.53 kcal Total: -83.54 -0.69 -84.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569095789.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.319 kcal (2) G-P(sol) polarization free energy of solvation -83.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds