Wall clock time and date at job start Tue Mar 31 2020 22:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29511 * 121.53135 * 2 1 4 4 S 1.69479 * 107.84348 * 180.23452 * 3 2 1 5 5 C 1.72016 * 96.02590 * 359.72455 * 4 3 2 6 6 C 1.50699 * 127.32025 * 179.97438 * 5 4 3 7 7 C 1.37898 * 105.36343 * 0.02562 * 5 4 3 8 8 C 1.47342 * 123.08515 * 180.02562 * 7 5 4 9 9 O 1.21611 * 120.00263 * 89.99976 * 8 7 5 10 10 N 1.34776 * 120.00041 * 269.99838 * 8 7 5 11 11 C 1.46501 * 120.00450 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47556 * 176.91022 * 11 10 8 13 13 N 1.46501 * 109.54351 * 54.82719 * 12 11 10 14 14 C 1.36938 * 120.00280 * 61.89560 * 13 12 11 15 15 H 1.08003 * 119.99454 * 354.93394 * 14 13 12 16 16 C 1.38812 * 120.00217 * 174.94150 * 14 13 12 17 17 N 1.31619 * 119.99958 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99939 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46819 * 270.00176 * 18 16 14 20 20 H 1.48501 * 109.47132 * 30.00283 * 18 16 14 21 21 H 1.48503 * 109.46810 * 150.00170 * 18 16 14 22 22 C 1.53177 * 109.62003 * 175.04564 * 12 11 10 23 23 C 1.53089 * 109.16793 * 176.89087 * 22 12 11 24 24 O 1.42903 * 109.41486 * 302.39492 * 23 22 12 25 25 C 1.42908 * 114.09661 * 61.15782 * 24 23 22 26 26 C 1.53099 * 109.41283 * 298.83902 * 25 24 23 27 27 H 1.09001 * 109.47101 * 270.27260 * 1 2 3 28 28 H 1.08998 * 109.47166 * 30.26608 * 1 2 3 29 29 H 1.08994 * 109.47521 * 150.27090 * 1 2 3 30 30 H 1.08998 * 109.47352 * 270.04607 * 6 5 4 31 31 H 1.09003 * 109.46946 * 30.03963 * 6 5 4 32 32 H 1.09002 * 109.47527 * 150.04411 * 6 5 4 33 33 H 0.97001 * 119.99939 * 359.97438 * 10 8 7 34 34 H 1.08999 * 109.47001 * 56.90691 * 11 10 8 35 35 H 1.09002 * 109.46862 * 296.91169 * 11 10 8 36 36 H 0.97001 * 120.00443 * 241.90105 * 13 12 11 37 37 H 0.96999 * 120.00039 * 179.97438 * 17 16 14 38 38 H 1.08994 * 109.52170 * 296.80299 * 22 12 11 39 39 H 1.09008 * 109.51837 * 56.98466 * 22 12 11 40 40 H 1.08996 * 109.48352 * 182.41186 * 23 22 12 41 41 H 1.09007 * 109.48484 * 62.37842 * 23 22 12 42 42 H 1.08996 * 109.48005 * 178.86072 * 25 24 23 43 43 H 1.08990 * 109.49185 * 58.82770 * 25 24 23 44 44 H 1.08996 * 109.52389 * 297.70479 * 26 25 24 45 45 H 1.09003 * 109.57081 * 177.54738 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8310 0.7029 -0.0066 5 6 3.6017 -1.0019 -0.0012 6 6 4.6676 -2.0672 -0.0040 7 6 2.2351 -1.1868 0.0050 8 6 1.6035 -2.5179 0.0116 9 8 1.3472 -3.0641 1.0675 10 7 1.3098 -3.1303 -1.1525 11 6 0.6813 -4.4536 -1.1460 12 6 0.3866 -4.8854 -2.5839 13 7 1.6176 -4.8248 -3.3759 14 6 2.6863 -5.6130 -3.0417 15 1 2.6523 -6.2183 -2.1479 16 6 3.8134 -5.6341 -3.8517 17 7 4.8408 -6.3914 -3.5303 18 14 3.8720 -4.5876 -5.3980 19 1 3.3387 -5.3673 -6.5438 20 1 3.0472 -3.3684 -5.2021 21 1 5.2768 -4.1953 -5.6771 22 6 -0.1563 -6.3177 -2.5897 23 6 -0.5203 -6.7114 -4.0237 24 8 -1.4761 -5.7844 -4.5426 25 6 -1.0067 -4.4361 -4.6054 26 6 -0.6622 -3.9510 -3.1947 27 1 -0.3633 0.0049 1.0277 28 1 -0.3633 0.8876 -0.5179 29 1 -0.3634 -0.8923 -0.5096 30 1 4.9200 -2.3260 -1.0323 31 1 5.5561 -1.6935 0.5050 32 1 4.2979 -2.9526 0.5132 33 1 1.5139 -2.6945 -1.9947 34 1 -0.2500 -4.4107 -0.5814 35 1 1.3551 -5.1735 -0.6813 36 1 1.6758 -4.2262 -4.1369 37 1 5.6283 -6.4064 -4.0965 38 1 0.6052 -6.9974 -2.2076 39 1 -1.0444 -6.3732 -1.9601 40 1 -0.9472 -7.7143 -4.0281 41 1 0.3759 -6.6950 -4.6439 42 1 -1.7839 -3.8000 -5.0288 43 1 -0.1169 -4.3896 -5.2331 44 1 -1.5605 -3.9587 -2.5774 45 1 -0.2629 -2.9380 -3.2443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569735963.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:36 Heat of formation + Delta-G solvation = -35.574570 kcal Electronic energy + Delta-G solvation = -28827.606426 eV Core-core repulsion = 24971.906882 eV Total energy + Delta-G solvation = -3855.699544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.27863 -39.42625 -37.97647 -35.97319 -33.59859 -33.25641 -32.23929 -30.80320 -29.95988 -29.82295 -28.37140 -26.77385 -23.98832 -23.43366 -22.84248 -21.95432 -20.96218 -19.27664 -18.57045 -18.16751 -17.93689 -16.70446 -15.97460 -15.71282 -15.55375 -14.96743 -14.77311 -14.60461 -14.46520 -14.32229 -14.05116 -13.49492 -13.39091 -13.28737 -13.12384 -12.77972 -12.58007 -12.50361 -12.36722 -12.23883 -12.20424 -12.00591 -11.61891 -11.19749 -11.08914 -11.07768 -10.96822 -10.76289 -10.48209 -10.17810 -9.93508 -9.77076 -9.67745 -9.36148 -9.33362 -8.95378 -8.70007 -8.64318 -7.48816 -5.92449 -3.31222 0.52974 1.30224 1.68220 2.12066 2.81465 3.19078 3.24424 3.32567 3.58956 4.22052 4.31048 4.41849 4.87770 4.91877 4.95711 5.04623 5.13504 5.13859 5.21776 5.29568 5.38519 5.39153 5.48177 5.49652 5.56880 5.57716 5.74484 5.82554 5.89928 5.92441 5.94640 6.06173 6.08690 6.12837 6.21487 6.39297 6.44387 6.51834 6.57711 6.63551 6.81004 7.55857 7.79225 7.83306 8.25033 8.45891 9.00894 9.73023 9.91009 11.24913 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010849 B = 0.004669 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.279796 B = 5995.439462 C = 7276.909641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.153 3.847 3 N -0.472 5.472 4 S 0.267 5.733 5 C -0.120 4.120 6 C -0.089 4.089 7 C -0.218 4.218 8 C 0.588 3.412 9 O -0.539 6.539 10 N -0.691 5.691 11 C 0.118 3.882 12 C 0.195 3.805 13 N -0.739 5.739 14 C -0.242 4.242 15 H 0.093 0.907 16 C 0.013 3.987 17 N -0.927 5.927 18 Si 0.876 3.124 19 H -0.284 1.284 20 H -0.280 1.280 21 H -0.292 1.292 22 C -0.151 4.151 23 C 0.069 3.931 24 O -0.391 6.391 25 C 0.066 3.934 26 C -0.155 4.155 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.401 0.599 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.050 0.950 44 H 0.076 0.924 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.492 10.258 3.166 13.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.025 4.025 3 N -0.293 5.293 4 S 0.423 5.577 5 C -0.251 4.251 6 C -0.148 4.148 7 C -0.238 4.238 8 C 0.369 3.631 9 O -0.417 6.417 10 N -0.340 5.340 11 C -0.008 4.008 12 C 0.104 3.896 13 N -0.383 5.383 14 C -0.371 4.371 15 H 0.111 0.889 16 C -0.183 4.183 17 N -0.573 5.573 18 Si 0.707 3.293 19 H -0.211 1.211 20 H -0.206 1.206 21 H -0.218 1.218 22 C -0.191 4.191 23 C -0.008 4.008 24 O -0.310 6.310 25 C -0.011 4.011 26 C -0.194 4.194 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.237 0.763 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.195 0.805 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.807 11.700 3.936 14.097 hybrid contribution -0.015 -0.612 -1.414 1.541 sum -6.822 11.088 2.521 13.261 Atomic orbital electron populations 1.20620 0.86253 1.03983 1.04046 1.21250 0.98818 0.87010 0.95399 1.76340 1.00248 1.25981 1.26765 1.83922 1.10444 0.95800 1.67582 1.26154 0.97438 1.02319 0.99177 1.20475 0.94377 0.95144 1.04796 1.20253 0.92586 0.96071 1.14862 1.17241 0.78046 0.83477 0.84309 1.90788 1.53726 1.66038 1.31122 1.45749 1.60846 1.19548 1.07891 1.21859 0.96906 0.83521 0.98468 1.19791 0.86537 0.93482 0.89806 1.42907 1.11478 1.49623 1.34332 1.18900 0.91861 1.18804 1.07547 0.88942 1.24629 0.96582 0.99069 0.98029 1.69683 1.06151 1.42069 1.39436 0.86720 0.76909 0.80486 0.85217 1.21062 1.20639 1.21795 1.22424 1.00664 0.98440 0.97576 1.22480 0.92587 0.91506 0.94189 1.87828 1.41150 1.17206 1.84801 1.22437 0.99264 0.83697 0.95693 1.22415 0.99487 0.99432 0.98035 0.89482 0.89891 0.90064 0.88398 0.90143 0.89289 0.76341 0.92242 0.90874 0.80456 0.92970 0.89765 0.92264 0.89933 0.91616 0.89764 0.93173 0.90573 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.96 36.01 0.36 -0.59 16 2 C 0.15 2.11 6.75 -83.20 -0.56 1.55 16 3 N -0.47 -6.65 11.97 32.49 0.39 -6.26 16 4 S 0.27 3.35 23.69 -107.50 -2.55 0.80 16 5 C -0.12 -1.69 6.67 -34.43 -0.23 -1.92 16 6 C -0.09 -1.18 10.19 36.01 0.37 -0.82 16 7 C -0.22 -3.27 5.61 -105.95 -0.59 -3.87 16 8 C 0.59 9.78 5.77 -12.56 -0.07 9.71 16 9 O -0.54 -10.66 17.11 5.27 0.09 -10.57 16 10 N -0.69 -10.85 5.13 -61.41 -0.31 -11.16 16 11 C 0.12 1.92 4.37 -4.04 -0.02 1.90 16 12 C 0.20 3.10 0.41 -131.64 -0.05 3.04 16 13 N -0.74 -14.15 3.42 -47.06 -0.16 -14.31 16 14 C -0.24 -5.74 9.16 -15.06 -0.14 -5.88 16 15 H 0.09 2.44 7.01 -52.48 -0.37 2.07 16 16 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16 17 N -0.93 -26.54 13.97 55.49 0.78 -25.76 16 18 Si 0.88 19.96 27.79 -169.99 -4.72 15.24 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 20 H -0.28 -5.86 6.45 56.52 0.36 -5.50 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 C -0.15 -2.38 4.79 -26.59 -0.13 -2.51 16 23 C 0.07 1.09 6.68 37.20 0.25 1.34 16 24 O -0.39 -6.15 10.77 -35.23 -0.38 -6.53 16 25 C 0.07 0.92 6.67 37.21 0.25 1.16 16 26 C -0.16 -2.06 4.80 -26.59 -0.13 -2.19 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.85 7.39 -51.93 -0.38 0.47 16 30 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 1.33 7.85 -51.93 -0.41 0.92 16 33 H 0.40 6.11 7.39 -40.82 -0.30 5.81 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.40 7.46 -51.93 -0.39 1.01 16 36 H 0.36 6.98 4.63 -40.82 -0.19 6.79 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.08 1.48 7.20 -51.93 -0.37 1.11 16 39 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.07 1.20 7.75 -51.93 -0.40 0.80 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.05 0.75 7.14 -51.93 -0.37 0.38 16 44 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.07 0.84 7.36 -51.93 -0.38 0.46 16 LS Contribution 374.60 15.07 5.65 5.65 Total: -1.00 -29.82 374.60 -8.57 -38.39 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -6.54 Total: 13.34 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -0.80 Total: 1.19 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.69 Total: -57.50 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.29 Total: -17.10 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.72 Total: 15.24 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -2.55 Total: 0.80 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.82 -8.57 -38.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569735963.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.814 kcal (2) G-P(sol) polarization free energy of solvation -29.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds