Wall clock time and date at job start Tue Mar 31 2020 22:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29026 * 124.91249 * 2 1 4 4 C 1.31781 * 117.12649 * 180.02562 * 3 2 1 5 5 C 1.50692 * 122.75507 * 180.02562 * 4 3 2 6 6 C 1.33647 * 114.49780 * 359.97438 * 4 3 2 7 7 C 1.50700 * 126.03740 * 179.73901 * 6 4 3 8 8 C 1.50694 * 109.47120 * 89.99916 * 7 6 4 9 9 O 1.21279 * 120.00017 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99934 * 179.97438 * 8 7 6 11 11 C 1.46495 * 119.99832 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46924 * 180.02562 * 11 10 8 13 13 H 1.08991 * 109.68455 * 59.84819 * 12 11 10 14 14 C 1.53298 * 109.68379 * 180.40735 * 12 11 10 15 15 O 1.42952 * 109.22446 * 172.02122 * 14 12 11 16 16 C 1.42960 * 114.17043 * 297.41977 * 15 14 12 17 17 C 1.53296 * 109.22385 * 62.57764 * 16 15 14 18 18 N 1.47149 * 108.38214 * 307.70322 * 17 16 15 19 19 C 1.36938 * 120.97866 * 230.55531 * 18 17 16 20 20 H 1.08002 * 120.00160 * 148.29702 * 19 18 17 21 21 C 1.38817 * 120.00149 * 328.28852 * 19 18 17 22 22 N 1.31619 * 119.99827 * 349.27471 * 21 19 18 23 23 Si 1.86793 * 120.00082 * 169.26642 * 21 19 18 24 24 H 1.48504 * 109.47229 * 60.00648 * 23 21 19 25 25 H 1.48507 * 109.47264 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47447 * 300.00372 * 23 21 19 27 27 S 1.70969 * 124.91936 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.47142 * 90.02165 * 1 2 3 29 29 H 1.09004 * 109.46789 * 210.02256 * 1 2 3 30 30 H 1.08998 * 109.47286 * 330.01829 * 1 2 3 31 31 H 1.08997 * 109.47416 * 269.99971 * 5 4 3 32 32 H 1.09005 * 109.47159 * 29.99796 * 5 4 3 33 33 H 1.08999 * 109.47804 * 149.99721 * 5 4 3 34 34 H 1.09000 * 109.46906 * 210.00303 * 7 6 4 35 35 H 1.09001 * 109.47075 * 329.99989 * 7 6 4 36 36 H 0.96993 * 119.99312 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.47348 * 299.99840 * 11 10 8 38 38 H 1.09001 * 109.47387 * 59.99988 * 11 10 8 39 39 H 1.09004 * 109.51144 * 291.94896 * 14 12 11 40 40 H 1.09000 * 109.51269 * 52.09720 * 14 12 11 41 41 H 1.09004 * 109.51211 * 302.65648 * 16 15 14 42 42 H 1.09000 * 109.51467 * 182.50729 * 16 15 14 43 43 H 1.08997 * 109.68152 * 187.97474 * 17 16 15 44 44 H 1.08998 * 109.68030 * 67.42692 * 17 16 15 45 45 H 0.96997 * 120.00253 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8795 -0.0005 5 6 4.5306 2.0247 0.0000 6 6 3.9354 -0.4005 -0.0004 7 6 5.3575 -0.8992 -0.0065 8 6 5.8383 -1.0633 1.4122 9 8 5.0989 -0.8015 2.3372 10 7 7.0898 -1.5020 1.6532 11 6 7.5570 -1.6620 3.0323 12 6 9.0008 -2.1682 3.0262 13 1 9.6385 -1.4529 2.5069 14 6 9.4914 -2.3472 4.4674 15 8 10.7668 -2.9928 4.4538 16 6 10.7503 -4.3098 3.8977 17 6 10.3241 -4.2314 2.4273 18 7 9.0657 -3.4729 2.3486 19 6 7.9866 -3.9667 1.6653 20 1 6.9852 -3.7312 1.9943 21 6 8.1797 -4.7699 0.5497 22 7 9.3800 -4.8862 0.0224 23 14 6.7361 -5.6856 -0.2030 24 1 5.7036 -4.7107 -0.6374 25 1 7.2033 -6.4679 -1.3757 26 1 6.1538 -6.6069 0.8058 27 16 2.4857 -1.4019 -0.0006 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8901 0.5135 31 1 4.7665 2.3016 -1.0275 32 1 4.0906 2.8790 0.5145 33 1 5.4433 1.7221 0.5133 34 1 5.4034 -1.8600 -0.5192 35 1 5.9924 -0.1804 -0.5245 36 1 7.6810 -1.7117 0.9133 37 1 7.5115 -0.7013 3.5452 38 1 6.9218 -2.3808 3.5501 39 1 9.5824 -1.3715 4.9449 40 1 8.7794 -2.9593 5.0211 41 1 10.0428 -4.9290 4.4493 42 1 11.7468 -4.7461 3.9653 43 1 10.1719 -5.2369 2.0351 44 1 11.0955 -3.7239 1.8481 45 1 9.5151 -5.4477 -0.7569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570068130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:54 Heat of formation + Delta-G solvation = -15.498008 kcal Electronic energy + Delta-G solvation = -27947.413427 eV Core-core repulsion = 24092.584468 eV Total energy + Delta-G solvation = -3854.828959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.05041 -39.18910 -38.29984 -35.39612 -33.77055 -33.57906 -31.72489 -30.76761 -30.27793 -29.15137 -27.29167 -26.20403 -24.58691 -23.50281 -22.70998 -21.76938 -20.14346 -19.70717 -18.67477 -17.86888 -17.13993 -16.31017 -15.99054 -15.77147 -15.21522 -15.00715 -14.82436 -14.61105 -14.37173 -13.97098 -13.89150 -13.49100 -13.43899 -13.27875 -13.14236 -12.89291 -12.70148 -12.55026 -12.32253 -12.03713 -11.95050 -11.76039 -11.55668 -11.12555 -10.96634 -10.92548 -10.80448 -10.46515 -10.32960 -10.10936 -9.71660 -9.59771 -9.54674 -9.13731 -8.98883 -8.73263 -8.45169 -8.32421 -6.78347 -5.97073 -3.47465 0.77261 1.42396 1.84876 2.82606 3.09059 3.21416 3.30082 3.32340 3.78113 4.09499 4.27824 4.49445 4.80865 4.95132 5.07678 5.12188 5.20124 5.24693 5.29257 5.34836 5.51306 5.55397 5.57222 5.61994 5.67898 5.69924 5.81751 5.85586 5.98092 5.99692 6.05463 6.11798 6.19045 6.28855 6.35843 6.48098 6.71176 7.02031 7.04696 7.43471 7.63603 7.81716 7.82522 8.14191 8.23465 8.75599 8.99275 9.59542 10.19466 11.09277 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014249 B = 0.003550 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.530339 B = 7885.588653 C = 9137.959639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.034 3.966 3 N -0.471 5.471 4 C 0.069 3.931 5 C -0.076 4.076 6 C -0.191 4.191 7 C -0.068 4.068 8 C 0.510 3.490 9 O -0.552 6.552 10 N -0.693 5.693 11 C 0.137 3.863 12 C 0.125 3.875 13 H 0.042 0.958 14 C 0.056 3.944 15 O -0.392 6.392 16 C 0.035 3.965 17 C 0.144 3.856 18 N -0.591 5.591 19 C -0.257 4.257 20 H 0.072 0.928 21 C 0.011 3.989 22 N -0.898 5.898 23 Si 0.895 3.105 24 H -0.281 1.281 25 H -0.289 1.289 26 H -0.282 1.282 27 S 0.130 5.870 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.416 0.584 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.046 0.954 41 H 0.040 0.960 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.030 0.970 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.414 7.680 -0.813 11.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.243 4.243 3 N -0.187 5.187 4 C -0.062 4.062 5 C -0.135 4.135 6 C -0.312 4.312 7 C -0.110 4.110 8 C 0.295 3.705 9 O -0.432 6.432 10 N -0.345 5.345 11 C 0.013 3.987 12 C 0.018 3.982 13 H 0.059 0.941 14 C -0.023 4.023 15 O -0.311 6.311 16 C -0.043 4.043 17 C 0.019 3.981 18 N -0.317 5.317 19 C -0.386 4.386 20 H 0.090 0.910 21 C -0.189 4.189 22 N -0.542 5.542 23 Si 0.724 3.276 24 H -0.207 1.207 25 H -0.214 1.214 26 H -0.209 1.209 27 S 0.387 5.613 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.254 0.746 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.048 0.952 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.202 7.260 -0.248 11.724 hybrid contribution -0.022 -0.328 -0.932 0.988 sum -9.224 6.932 -1.180 11.598 Atomic orbital electron populations 1.20386 0.85424 1.04024 1.03544 1.26830 1.01501 0.91418 1.04568 1.66092 1.04445 1.31756 1.16369 1.20017 0.90132 0.93852 1.02236 1.20320 0.96070 0.94664 1.02449 1.24991 0.98666 0.95537 1.12032 1.20073 0.90180 1.04129 0.96625 1.20211 0.82248 0.77680 0.90408 1.90668 1.55250 1.51574 1.45660 1.45976 1.13911 1.64744 1.09842 1.21150 0.94934 0.99429 0.83201 1.21429 0.93579 0.89827 0.93331 0.94070 1.22866 0.85887 0.96850 0.96730 1.87801 1.30020 1.30405 1.82851 1.23354 1.00362 0.83216 0.97402 1.21403 0.87419 0.98906 0.90372 1.44073 1.12098 1.14690 1.60823 1.19171 0.86671 1.27802 1.04974 0.91038 1.25150 0.96341 1.01186 0.96216 1.69963 1.20525 1.40691 1.22995 0.86500 0.82097 0.80223 0.78739 1.20697 1.21434 1.20869 1.83989 0.97464 1.11885 1.67998 0.89868 0.90255 0.89499 0.90851 0.90721 0.90800 0.87424 0.87023 0.74614 0.92350 0.91570 0.89913 0.93526 0.94129 0.90223 0.89084 0.95216 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.46 36.01 0.38 -0.29 16 2 C 0.03 0.47 7.39 -13.46 -0.10 0.37 16 3 N -0.47 -7.25 10.53 -8.06 -0.08 -7.33 16 4 C 0.07 1.05 6.74 -84.23 -0.57 0.49 16 5 C -0.08 -0.93 9.81 36.00 0.35 -0.58 16 6 C -0.19 -2.96 5.08 -35.92 -0.18 -3.15 16 7 C -0.07 -1.01 5.63 -29.04 -0.16 -1.17 16 8 C 0.51 9.08 7.82 -10.98 -0.09 8.99 16 9 O -0.55 -11.48 16.03 5.56 0.09 -11.39 16 10 N -0.69 -12.37 3.79 -60.30 -0.23 -12.60 16 11 C 0.14 2.46 4.45 -4.04 -0.02 2.44 16 12 C 0.13 2.37 3.21 -67.42 -0.22 2.15 16 13 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 14 C 0.06 0.96 6.29 37.31 0.23 1.20 16 15 O -0.39 -7.48 10.74 -35.23 -0.38 -7.86 16 16 C 0.03 0.65 6.98 37.31 0.26 0.91 16 17 C 0.14 3.19 5.37 -3.53 -0.02 3.17 16 18 N -0.59 -13.16 3.03 -164.30 -0.50 -13.66 16 19 C -0.26 -6.12 7.04 -15.06 -0.11 -6.23 16 20 H 0.07 1.74 5.84 -52.49 -0.31 1.44 16 21 C 0.01 0.27 5.06 -17.43 -0.09 0.18 16 22 N -0.90 -23.38 11.17 55.49 0.62 -22.76 16 23 Si 0.90 20.04 29.57 -169.99 -5.03 15.01 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 S 0.13 1.88 23.18 -107.50 -2.49 -0.61 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.90 7.36 -51.93 -0.38 0.51 16 34 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.11 1.35 7.44 -51.93 -0.39 0.96 16 36 H 0.42 7.66 7.32 -40.82 -0.30 7.36 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.31 7.56 -51.93 -0.39 0.91 16 39 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.09 2.22 6.37 -51.93 -0.33 1.89 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 376.73 15.07 5.68 5.68 Total: -1.00 -30.01 376.73 -9.37 -39.38 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.73 Total: 7.66 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -0.32 Total: 8.49 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.19 Total: -56.36 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.29 Total: -19.25 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.49 Total: -0.61 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.01 -9.37 -39.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570068130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.886 kcal (2) G-P(sol) polarization free energy of solvation -30.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds