Wall clock time and date at job start Tue Mar 31 2020 22:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29026 * 124.91249 * 2 1 4 4 C 1.31781 * 117.12649 * 180.02562 * 3 2 1 5 5 C 1.50692 * 122.75507 * 180.02562 * 4 3 2 6 6 C 1.33647 * 114.49780 * 359.97438 * 4 3 2 7 7 C 1.50700 * 126.03740 * 179.73901 * 6 4 3 8 8 C 1.50694 * 109.47120 * 89.99916 * 7 6 4 9 9 O 1.21279 * 120.00017 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99934 * 179.97438 * 8 7 6 11 11 C 1.46495 * 119.99832 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46924 * 180.02562 * 11 10 8 13 13 H 1.08991 * 109.68455 * 59.84819 * 12 11 10 14 14 C 1.53298 * 109.68379 * 180.40735 * 12 11 10 15 15 O 1.42952 * 109.22446 * 172.02122 * 14 12 11 16 16 C 1.42960 * 114.17043 * 297.41977 * 15 14 12 17 17 C 1.53296 * 109.22385 * 62.57764 * 16 15 14 18 18 N 1.47149 * 108.38214 * 307.70322 * 17 16 15 19 19 C 1.36938 * 120.97866 * 230.55531 * 18 17 16 20 20 H 1.08002 * 120.00160 * 148.29702 * 19 18 17 21 21 C 1.38817 * 120.00149 * 328.28852 * 19 18 17 22 22 N 1.31619 * 119.99827 * 349.27471 * 21 19 18 23 23 Si 1.86793 * 120.00082 * 169.26642 * 21 19 18 24 24 H 1.48504 * 109.47229 * 60.00648 * 23 21 19 25 25 H 1.48507 * 109.47264 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47447 * 300.00372 * 23 21 19 27 27 S 1.70969 * 124.91936 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.47142 * 90.02165 * 1 2 3 29 29 H 1.09004 * 109.46789 * 210.02256 * 1 2 3 30 30 H 1.08998 * 109.47286 * 330.01829 * 1 2 3 31 31 H 1.08997 * 109.47416 * 269.99971 * 5 4 3 32 32 H 1.09005 * 109.47159 * 29.99796 * 5 4 3 33 33 H 1.08999 * 109.47804 * 149.99721 * 5 4 3 34 34 H 1.09000 * 109.46906 * 210.00303 * 7 6 4 35 35 H 1.09001 * 109.47075 * 329.99989 * 7 6 4 36 36 H 0.96993 * 119.99312 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.47348 * 299.99840 * 11 10 8 38 38 H 1.09001 * 109.47387 * 59.99988 * 11 10 8 39 39 H 1.09004 * 109.51144 * 291.94896 * 14 12 11 40 40 H 1.09000 * 109.51269 * 52.09720 * 14 12 11 41 41 H 1.09004 * 109.51211 * 302.65648 * 16 15 14 42 42 H 1.09000 * 109.51467 * 182.50729 * 16 15 14 43 43 H 1.08997 * 109.68152 * 187.97474 * 17 16 15 44 44 H 1.08998 * 109.68030 * 67.42692 * 17 16 15 45 45 H 0.96997 * 120.00253 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8795 -0.0005 5 6 4.5306 2.0247 0.0000 6 6 3.9354 -0.4005 -0.0004 7 6 5.3575 -0.8992 -0.0065 8 6 5.8383 -1.0633 1.4122 9 8 5.0989 -0.8015 2.3372 10 7 7.0898 -1.5020 1.6532 11 6 7.5570 -1.6620 3.0323 12 6 9.0008 -2.1682 3.0262 13 1 9.6385 -1.4529 2.5069 14 6 9.4914 -2.3472 4.4674 15 8 10.7668 -2.9928 4.4538 16 6 10.7503 -4.3098 3.8977 17 6 10.3241 -4.2314 2.4273 18 7 9.0657 -3.4729 2.3486 19 6 7.9866 -3.9667 1.6653 20 1 6.9852 -3.7312 1.9943 21 6 8.1797 -4.7699 0.5497 22 7 9.3800 -4.8862 0.0224 23 14 6.7361 -5.6856 -0.2030 24 1 5.7036 -4.7107 -0.6374 25 1 7.2033 -6.4679 -1.3757 26 1 6.1538 -6.6069 0.8058 27 16 2.4857 -1.4019 -0.0006 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8901 0.5135 31 1 4.7665 2.3016 -1.0275 32 1 4.0906 2.8790 0.5145 33 1 5.4433 1.7221 0.5133 34 1 5.4034 -1.8600 -0.5192 35 1 5.9924 -0.1804 -0.5245 36 1 7.6810 -1.7117 0.9133 37 1 7.5115 -0.7013 3.5452 38 1 6.9218 -2.3808 3.5501 39 1 9.5824 -1.3715 4.9449 40 1 8.7794 -2.9593 5.0211 41 1 10.0428 -4.9290 4.4493 42 1 11.7468 -4.7461 3.9653 43 1 10.1719 -5.2369 2.0351 44 1 11.0955 -3.7239 1.8481 45 1 9.5151 -5.4477 -0.7569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570068130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:53 Heat of formation + Delta-G solvation = -34.877081 kcal Electronic energy + Delta-G solvation = -27948.253766 eV Core-core repulsion = 24092.584468 eV Total energy + Delta-G solvation = -3855.669298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.24906 -40.57645 -39.79916 -36.95984 -35.29319 -34.81430 -33.31914 -32.28333 -31.53052 -30.06260 -29.00222 -27.54070 -25.90608 -25.21874 -23.70776 -23.32505 -21.56738 -21.31591 -19.84371 -18.94862 -18.74804 -17.80839 -17.59272 -17.25346 -16.54635 -16.31470 -16.19152 -16.07115 -15.79964 -15.44016 -15.39585 -14.96670 -14.60101 -14.47154 -14.34597 -14.13736 -14.06178 -13.73365 -13.45454 -13.23264 -13.09080 -12.90442 -12.84700 -12.79458 -12.72037 -12.49198 -12.16586 -12.08109 -12.00163 -11.85448 -11.30885 -11.04166 -10.68009 -10.63104 -10.55997 -10.22643 -9.85326 -9.52890 -8.60623 -7.86299 -5.37870 -0.31471 0.35943 0.76163 1.40846 1.47661 1.50602 1.68325 1.73628 2.38769 2.47730 3.03729 3.14302 3.29879 3.45000 3.65384 3.98026 4.00606 4.04655 4.07403 4.23531 4.35347 4.45390 4.47926 4.48761 4.54002 4.61081 4.64195 4.64512 4.66544 4.72413 4.75808 4.80718 4.95609 5.00853 5.07699 5.12113 5.30792 5.35602 5.56929 5.64136 5.69723 6.29968 6.37940 6.69319 6.73499 7.11341 7.32600 7.77062 8.34019 9.17862 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014249 B = 0.003550 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.530339 B = 7885.588653 C = 9137.959639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.046 3.954 3 N -0.496 5.496 4 C 0.063 3.937 5 C -0.075 4.075 6 C -0.217 4.217 7 C -0.061 4.061 8 C 0.511 3.489 9 O -0.583 6.583 10 N -0.694 5.694 11 C 0.144 3.856 12 C 0.127 3.873 13 H 0.040 0.960 14 C 0.056 3.944 15 O -0.397 6.397 16 C 0.046 3.954 17 C 0.150 3.850 18 N -0.605 5.605 19 C -0.243 4.243 20 H 0.067 0.933 21 C -0.027 4.027 22 N -0.924 5.924 23 Si 0.938 3.062 24 H -0.270 1.270 25 H -0.295 1.295 26 H -0.291 1.291 27 S 0.111 5.889 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.140 0.860 36 H 0.413 0.587 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.117 0.883 40 H 0.047 0.953 41 H 0.042 0.958 42 H 0.104 0.896 43 H 0.064 0.936 44 H 0.008 0.992 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.287 8.813 -0.443 12.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.232 4.232 3 N -0.212 5.212 4 C -0.068 4.068 5 C -0.134 4.134 6 C -0.338 4.338 7 C -0.103 4.103 8 C 0.298 3.702 9 O -0.464 6.464 10 N -0.344 5.344 11 C 0.019 3.981 12 C 0.021 3.979 13 H 0.058 0.942 14 C -0.022 4.022 15 O -0.316 6.316 16 C -0.032 4.032 17 C 0.024 3.976 18 N -0.331 5.331 19 C -0.373 4.373 20 H 0.085 0.915 21 C -0.225 4.225 22 N -0.570 5.570 23 Si 0.768 3.232 24 H -0.195 1.195 25 H -0.221 1.221 26 H -0.217 1.217 27 S 0.367 5.633 28 H 0.123 0.877 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.157 0.843 36 H 0.251 0.749 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.135 0.865 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.122 0.878 43 H 0.083 0.917 44 H 0.026 0.974 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.072 8.409 0.134 13.122 hybrid contribution 0.188 -0.626 -0.997 1.193 sum -9.885 7.782 -0.864 12.610 Atomic orbital electron populations 1.20621 0.82418 1.05205 1.05283 1.27607 1.03140 0.90406 1.02049 1.66188 1.04728 1.32378 1.17954 1.20473 0.90672 0.94523 1.01153 1.20401 0.95374 0.93806 1.03838 1.25068 0.98900 0.95915 1.13952 1.20049 0.90657 1.04855 0.94701 1.20653 0.81617 0.76634 0.91334 1.90647 1.55902 1.52938 1.46940 1.45993 1.14088 1.64634 1.09702 1.21080 0.93773 0.99832 0.83368 1.21541 0.94228 0.88088 0.94034 0.94249 1.22995 0.85220 0.98460 0.95536 1.87804 1.30945 1.30313 1.82516 1.23222 1.01712 0.83558 0.94737 1.21223 0.86909 0.97111 0.92328 1.44276 1.11649 1.16239 1.60937 1.19203 0.86942 1.26841 1.04324 0.91537 1.25582 0.97641 1.02294 0.96934 1.70080 1.21790 1.41686 1.23401 0.85800 0.80504 0.79297 0.77624 1.19513 1.22114 1.21748 1.83983 0.97946 1.12849 1.68538 0.87699 0.88561 0.88733 0.88726 0.90528 0.90830 0.87619 0.84266 0.74913 0.90301 0.93483 0.86499 0.93471 0.93979 0.87800 0.91734 0.97376 0.94029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.46 71.24 0.75 -0.45 16 2 C 0.05 1.17 7.39 88.52 0.65 1.82 16 3 N -0.50 -14.65 10.53 -179.41 -1.89 -16.54 16 4 C 0.06 1.85 6.74 41.52 0.28 2.13 16 5 C -0.07 -1.73 9.81 71.23 0.70 -1.03 16 6 C -0.22 -6.56 5.08 24.64 0.13 -6.44 16 7 C -0.06 -1.76 5.63 29.10 0.16 -1.59 16 8 C 0.51 17.85 7.82 87.65 0.69 18.53 16 9 O -0.58 -23.95 16.03 -3.03 -0.05 -24.00 16 10 N -0.69 -24.26 3.79 -463.07 -1.75 -26.01 16 11 C 0.14 4.99 4.45 86.38 0.38 5.38 16 12 C 0.13 4.65 3.21 44.97 0.14 4.80 16 13 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 14 C 0.06 1.82 6.29 72.08 0.45 2.28 16 15 O -0.40 -14.29 10.74 -148.98 -1.60 -15.89 16 16 C 0.05 1.65 6.98 72.08 0.50 2.16 16 17 C 0.15 6.65 5.37 86.35 0.46 7.11 16 18 N -0.61 -26.80 3.03 -673.74 -2.04 -28.84 16 19 C -0.24 -11.59 7.04 84.03 0.59 -10.99 16 20 H 0.07 3.24 5.84 -2.91 -0.02 3.22 16 21 C -0.03 -1.37 5.06 84.86 0.43 -0.94 16 22 N -0.92 -48.92 11.17 21.65 0.24 -48.68 16 23 Si 0.94 41.34 29.57 68.60 2.03 43.37 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 25 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 26 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 27 S 0.11 3.11 23.18 -56.49 -1.31 1.80 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.07 1.67 7.36 -2.39 -0.02 1.66 16 34 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 35 H 0.14 3.14 7.44 -2.39 -0.02 3.12 16 36 H 0.41 15.02 7.32 -92.71 -0.68 14.35 16 37 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.05 1.83 7.56 -2.39 -0.02 1.81 16 39 H 0.12 3.00 8.14 -2.38 -0.02 2.98 16 40 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 43 H 0.06 3.20 6.37 -2.39 -0.02 3.19 16 44 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.25 13.14 8.31 -92.71 -0.77 12.36 16 Total: -1.00 -64.30 376.73 0.29 -64.02 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.33 Total: 28.01 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: 6.32 Total: 22.77 kcal Atomic # 7 Polarization: -114.64 SS G_CDS: -5.44 Total: -120.08 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -1.65 Total: -39.89 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -1.31 Total: 1.80 kcal Total: -64.30 0.29 -64.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570068130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.138 kcal (2) G-P(sol) polarization free energy of solvation -64.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds