Wall clock time and date at job start Tue Mar 31 2020 22:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34485 * 126.16042 * 2 1 4 4 C 1.30260 * 108.69814 * 179.97438 * 3 2 1 5 5 O 1.33967 * 108.75886 * 359.97438 * 4 3 2 6 6 C 1.34330 * 126.17007 * 179.97438 * 2 1 3 7 7 C 1.50704 * 126.44088 * 0.02562 * 6 2 1 8 8 N 1.46900 * 109.46697 * 90.00090 * 7 6 2 9 9 C 1.46899 * 111.00114 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47340 * 180.02562 * 9 8 7 11 11 C 1.53786 * 113.61281 * 274.13746 * 10 9 8 12 12 C 1.53954 * 87.01827 * 220.04886 * 11 10 9 13 13 N 1.46501 * 113.53602 * 270.81142 * 12 11 10 14 14 C 1.34777 * 120.00095 * 252.49603 * 13 12 11 15 15 O 1.21277 * 119.99885 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00336 * 180.02562 * 14 13 12 17 17 S 1.80992 * 109.47319 * 179.97438 * 16 14 13 18 18 C 1.76204 * 100.00146 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99451 * 0.02562 * 18 17 16 20 20 C 1.38794 * 120.00653 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00563 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99566 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47259 * 89.99932 * 22 20 18 24 24 H 1.48502 * 109.47002 * 210.00395 * 22 20 18 25 25 H 1.48505 * 109.47161 * 329.99671 * 22 20 18 26 26 C 1.53781 * 87.11353 * 25.36482 * 12 11 10 27 27 H 1.09003 * 109.47326 * 89.98074 * 1 2 3 28 28 H 1.08997 * 109.47260 * 209.97193 * 1 2 3 29 29 H 1.08997 * 109.47671 * 329.97682 * 1 2 3 30 30 H 1.07997 * 125.61808 * 179.97438 * 4 3 2 31 31 H 1.08990 * 109.47109 * 210.00053 * 7 6 2 32 32 H 1.09001 * 109.47371 * 330.00567 * 7 6 2 33 33 H 1.00900 * 111.00330 * 303.95682 * 8 7 6 34 34 H 1.08999 * 109.47362 * 300.00691 * 9 8 7 35 35 H 1.09006 * 109.46404 * 60.00161 * 9 8 7 36 36 H 1.08996 * 112.84934 * 45.33416 * 10 9 8 37 37 H 1.08992 * 113.61539 * 334.57048 * 11 10 9 38 38 H 1.09000 * 113.61360 * 105.47046 * 11 10 9 39 39 H 1.08998 * 113.73986 * 139.94584 * 12 11 10 40 40 H 0.97001 * 120.00224 * 72.49972 * 13 12 11 41 41 H 1.09006 * 109.46861 * 300.00320 * 16 14 13 42 42 H 1.09008 * 109.46908 * 59.99851 * 16 14 13 43 43 H 0.97003 * 119.99973 * 179.97438 * 21 20 18 44 44 H 1.08995 * 113.61338 * 220.09070 * 26 12 11 45 45 H 1.08999 * 113.61576 * 89.18371 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0858 0.0000 4 6 3.5431 0.6949 0.0006 5 8 3.5734 -0.6444 0.0015 6 6 2.2998 -1.0844 0.0005 7 6 1.8494 -2.5226 0.0006 8 7 1.7036 -2.9900 -1.3844 9 6 1.2653 -4.3916 -1.4236 10 6 1.1256 -4.8417 -2.8792 11 6 -0.2431 -4.5112 -3.4975 12 6 -0.1797 -5.8915 -4.1765 13 7 0.4736 -5.8690 -5.4876 14 6 -0.2607 -6.0103 -6.6089 15 8 -1.4623 -6.1555 -6.5326 16 6 0.4113 -5.9878 -7.9576 17 16 -0.8324 -6.2008 -9.2551 18 6 0.1996 -6.1363 -10.6819 19 1 1.2652 -5.9992 -10.5717 20 6 -0.3568 -6.2618 -11.9472 21 7 0.4141 -6.2131 -13.0130 22 14 -2.2000 -6.4983 -12.1377 23 1 -2.8601 -5.1729 -12.2503 24 1 -2.4731 -7.2931 -13.3620 25 1 -2.7320 -7.2172 -10.9521 26 6 0.7510 -6.3254 -3.0319 27 1 -0.3634 0.0003 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3634 0.8897 0.5142 30 1 4.4065 1.3436 0.0003 31 1 2.5898 -3.1351 0.5148 32 1 0.8912 -2.6033 0.5140 33 1 1.0704 -2.3982 -1.9011 34 1 2.0020 -5.0169 -0.9194 35 1 0.3032 -4.4855 -0.9199 36 1 1.9694 -4.5384 -3.4989 37 1 -1.0438 -4.4221 -2.7635 38 1 -0.2155 -3.6770 -4.1986 39 1 -1.1333 -6.4192 -4.1878 40 1 1.4346 -5.7525 -5.5488 41 1 0.9198 -5.0333 -8.0943 42 1 1.1382 -6.7981 -8.0150 43 1 0.0252 -6.3012 -13.8973 44 1 1.5800 -6.9537 -3.3575 45 1 0.2226 -6.7332 -2.1702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570555374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:01 Heat of formation + Delta-G solvation = 2.678430 kcal Electronic energy + Delta-G solvation = -25482.486807 eV Core-core repulsion = 21628.446038 eV Total energy + Delta-G solvation = -3854.040769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.74152 -40.29516 -38.42442 -36.55177 -35.51331 -33.35888 -32.44129 -32.11503 -29.72642 -28.84695 -27.04859 -26.01525 -25.62151 -24.83107 -22.62690 -22.46048 -21.19231 -20.90983 -19.34198 -17.90546 -17.63040 -17.12386 -16.78163 -16.40198 -16.08274 -15.39359 -15.33682 -15.12313 -14.97061 -14.93604 -14.26934 -14.05143 -13.77017 -13.68623 -13.46928 -13.36134 -13.22887 -12.84753 -12.78761 -12.67029 -12.42956 -12.29378 -11.80686 -11.41927 -11.29059 -11.23541 -11.01259 -10.92851 -10.72371 -10.63405 -10.38389 -9.86128 -9.54974 -9.24099 -9.02174 -8.97073 -8.96099 -8.50850 -6.92354 -6.29100 -4.00998 0.99191 2.22817 2.33328 2.74378 2.92538 3.28485 3.33564 3.50113 3.61809 3.64558 3.74437 4.20443 4.28101 4.32787 4.33349 4.36740 4.47052 4.62254 4.63468 4.74213 4.83033 4.97205 5.09920 5.10818 5.12056 5.17133 5.23463 5.24439 5.30485 5.40738 5.47416 5.51732 5.63626 5.72959 5.74963 5.78883 5.83232 5.90720 5.99426 6.03405 6.37735 6.61058 6.77022 7.29434 7.59826 7.93916 8.41523 8.47354 9.17008 10.80082 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017089 B = 0.001730 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.047780 B =16179.929228 C =16847.383329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.009 4.009 3 N -0.487 5.487 4 C 0.174 3.826 5 O -0.195 6.195 6 C -0.041 4.041 7 C 0.143 3.857 8 N -0.685 5.685 9 C 0.070 3.930 10 C -0.109 4.109 11 C -0.153 4.153 12 C 0.125 3.875 13 N -0.719 5.719 14 C 0.533 3.467 15 O -0.519 6.519 16 C -0.125 4.125 17 S -0.141 6.141 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.140 4.140 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.250 0.750 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.347 0.653 34 H 0.076 0.924 35 H 0.036 0.964 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.400 0.600 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.271 0.729 44 H 0.076 0.924 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.067 7.807 31.671 33.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.129 4.129 3 N -0.217 5.217 4 C -0.053 4.053 5 O -0.081 6.081 6 C -0.095 4.095 7 C 0.014 3.986 8 N -0.317 5.317 9 C -0.058 4.058 10 C -0.128 4.128 11 C -0.192 4.192 12 C 0.019 3.981 13 N -0.372 5.372 14 C 0.320 3.680 15 O -0.393 6.393 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.178 4.178 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.266 0.734 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.166 0.834 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.120 0.880 40 H 0.234 0.766 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.586 7.975 31.521 32.711 hybrid contribution 0.781 -0.146 -0.257 0.835 sum 4.367 7.830 31.264 32.524 Atomic orbital electron populations 1.20160 0.86531 1.03346 1.03176 1.21571 0.97990 0.87706 1.05669 1.70377 1.01466 1.31692 1.18114 1.28055 0.97561 0.79373 1.00265 1.84449 1.29994 1.24485 1.69144 1.22970 0.80985 0.97342 1.08178 1.20223 1.00333 0.86551 0.91447 1.60451 1.55701 1.03945 1.11648 1.21993 0.98768 0.88310 0.96764 1.22640 0.98423 0.96082 0.95612 1.23576 0.96824 0.98691 1.00082 1.21716 0.97481 0.96813 0.82096 1.45664 1.10912 1.75900 1.04744 1.20302 0.87423 0.75015 0.85292 1.90693 1.14400 1.47281 1.86912 1.23285 1.03730 1.05841 0.94658 1.84782 1.12505 1.95722 0.98518 1.22317 0.96362 1.57731 0.90502 0.89374 1.24717 0.98682 0.93299 0.94647 1.69939 1.35752 1.47813 0.98152 0.86731 0.85184 0.79959 0.79949 1.19208 1.19938 1.15935 1.23333 0.99930 0.96039 0.98535 0.90416 0.90912 0.90401 0.73414 0.88974 0.91610 0.83412 0.90552 0.94538 0.88199 0.89545 0.90797 0.88021 0.76563 0.88466 0.88416 0.91939 0.90566 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.22 36.00 0.37 -0.08 16 2 C -0.01 -0.08 7.11 -82.81 -0.59 -0.66 16 3 N -0.49 -4.73 11.30 -11.18 -0.13 -4.86 16 4 C 0.17 1.25 13.23 52.10 0.69 1.94 16 5 O -0.20 -1.69 10.77 5.38 0.06 -1.64 16 6 C -0.04 -0.33 6.90 -35.69 -0.25 -0.58 16 7 C 0.14 0.83 6.02 -4.97 -0.03 0.80 16 8 N -0.69 -4.48 6.49 -115.06 -0.75 -5.22 16 9 C 0.07 0.39 5.51 -3.83 -0.02 0.37 16 10 C -0.11 -0.73 3.77 -89.80 -0.34 -1.07 16 11 C -0.15 -1.28 7.44 -25.83 -0.19 -1.47 16 12 C 0.13 1.28 4.33 -67.03 -0.29 0.99 16 13 N -0.72 -8.74 5.26 -52.93 -0.28 -9.01 16 14 C 0.53 9.25 7.85 -10.98 -0.09 9.17 16 15 O -0.52 -11.00 15.46 5.56 0.09 -10.91 16 16 C -0.12 -2.38 6.16 36.01 0.22 -2.16 16 17 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16 18 C -0.52 -15.02 10.04 30.94 0.31 -14.70 16 19 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 21 N -0.88 -26.56 13.97 55.49 0.78 -25.78 16 22 Si 0.86 21.78 27.74 -169.99 -4.72 17.07 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 26 C -0.14 -0.97 7.39 -25.92 -0.19 -1.16 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.30 7.16 -51.93 -0.37 -0.07 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.25 0.57 8.06 -52.49 -0.42 0.14 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.27 7.17 -51.93 -0.37 -0.10 16 33 H 0.35 2.33 8.72 -39.29 -0.34 1.99 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.04 0.18 7.88 -51.93 -0.41 -0.23 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.63 7.92 -51.93 -0.41 0.21 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 1.25 7.46 -51.93 -0.39 0.86 16 40 H 0.40 3.84 8.70 -40.82 -0.36 3.48 16 41 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 42 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 0.53 8.10 -51.93 -0.42 0.11 16 LS Contribution 392.74 15.07 5.92 5.92 Total: -1.00 -36.38 392.74 -8.39 -44.77 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.88 Total: 1.16 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -0.49 Total: -5.92 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.38 Total: -44.87 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.14 Total: -12.55 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.72 Total: 17.07 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.38 -8.39 -44.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570555374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.446 kcal (2) G-P(sol) polarization free energy of solvation -36.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds