Wall clock time and date at job start Tue Mar 31 2020 22:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34485 * 126.16042 * 2 1 4 4 C 1.30260 * 108.69814 * 179.97438 * 3 2 1 5 5 O 1.33967 * 108.75886 * 359.97438 * 4 3 2 6 6 C 1.34330 * 126.17007 * 179.97438 * 2 1 3 7 7 C 1.50704 * 126.44088 * 0.02562 * 6 2 1 8 8 N 1.46900 * 109.46697 * 90.00090 * 7 6 2 9 9 C 1.46899 * 111.00114 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47340 * 180.02562 * 9 8 7 11 11 C 1.53786 * 113.61281 * 274.13746 * 10 9 8 12 12 C 1.53954 * 87.01827 * 220.04886 * 11 10 9 13 13 N 1.46501 * 113.53602 * 270.81142 * 12 11 10 14 14 C 1.34777 * 120.00095 * 252.49603 * 13 12 11 15 15 O 1.21277 * 119.99885 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00336 * 180.02562 * 14 13 12 17 17 S 1.80992 * 109.47319 * 179.97438 * 16 14 13 18 18 C 1.76204 * 100.00146 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99451 * 0.02562 * 18 17 16 20 20 C 1.38794 * 120.00653 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00563 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99566 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47259 * 89.99932 * 22 20 18 24 24 H 1.48502 * 109.47002 * 210.00395 * 22 20 18 25 25 H 1.48505 * 109.47161 * 329.99671 * 22 20 18 26 26 C 1.53781 * 87.11353 * 25.36482 * 12 11 10 27 27 H 1.09003 * 109.47326 * 89.98074 * 1 2 3 28 28 H 1.08997 * 109.47260 * 209.97193 * 1 2 3 29 29 H 1.08997 * 109.47671 * 329.97682 * 1 2 3 30 30 H 1.07997 * 125.61808 * 179.97438 * 4 3 2 31 31 H 1.08990 * 109.47109 * 210.00053 * 7 6 2 32 32 H 1.09001 * 109.47371 * 330.00567 * 7 6 2 33 33 H 1.00900 * 111.00330 * 303.95682 * 8 7 6 34 34 H 1.08999 * 109.47362 * 300.00691 * 9 8 7 35 35 H 1.09006 * 109.46404 * 60.00161 * 9 8 7 36 36 H 1.08996 * 112.84934 * 45.33416 * 10 9 8 37 37 H 1.08992 * 113.61539 * 334.57048 * 11 10 9 38 38 H 1.09000 * 113.61360 * 105.47046 * 11 10 9 39 39 H 1.08998 * 113.73986 * 139.94584 * 12 11 10 40 40 H 0.97001 * 120.00224 * 72.49972 * 13 12 11 41 41 H 1.09006 * 109.46861 * 300.00320 * 16 14 13 42 42 H 1.09008 * 109.46908 * 59.99851 * 16 14 13 43 43 H 0.97003 * 119.99973 * 179.97438 * 21 20 18 44 44 H 1.08995 * 113.61338 * 220.09070 * 26 12 11 45 45 H 1.08999 * 113.61576 * 89.18371 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0858 0.0000 4 6 3.5431 0.6949 0.0006 5 8 3.5734 -0.6444 0.0015 6 6 2.2998 -1.0844 0.0005 7 6 1.8494 -2.5226 0.0006 8 7 1.7036 -2.9900 -1.3844 9 6 1.2653 -4.3916 -1.4236 10 6 1.1256 -4.8417 -2.8792 11 6 -0.2431 -4.5112 -3.4975 12 6 -0.1797 -5.8915 -4.1765 13 7 0.4736 -5.8690 -5.4876 14 6 -0.2607 -6.0103 -6.6089 15 8 -1.4623 -6.1555 -6.5326 16 6 0.4113 -5.9878 -7.9576 17 16 -0.8324 -6.2008 -9.2551 18 6 0.1996 -6.1363 -10.6819 19 1 1.2652 -5.9992 -10.5717 20 6 -0.3568 -6.2618 -11.9472 21 7 0.4141 -6.2131 -13.0130 22 14 -2.2000 -6.4983 -12.1377 23 1 -2.8601 -5.1729 -12.2503 24 1 -2.4731 -7.2931 -13.3620 25 1 -2.7320 -7.2172 -10.9521 26 6 0.7510 -6.3254 -3.0319 27 1 -0.3634 0.0003 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3634 0.8897 0.5142 30 1 4.4065 1.3436 0.0003 31 1 2.5898 -3.1351 0.5148 32 1 0.8912 -2.6033 0.5140 33 1 1.0704 -2.3982 -1.9011 34 1 2.0020 -5.0169 -0.9194 35 1 0.3032 -4.4855 -0.9199 36 1 1.9694 -4.5384 -3.4989 37 1 -1.0438 -4.4221 -2.7635 38 1 -0.2155 -3.6770 -4.1986 39 1 -1.1333 -6.4192 -4.1878 40 1 1.4346 -5.7525 -5.5488 41 1 0.9198 -5.0333 -8.0943 42 1 1.1382 -6.7981 -8.0150 43 1 0.0252 -6.3012 -13.8973 44 1 1.5800 -6.9537 -3.3575 45 1 0.2226 -6.7332 -2.1702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570555374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:00 Heat of formation + Delta-G solvation = -26.528740 kcal Electronic energy + Delta-G solvation = -25483.753325 eV Core-core repulsion = 21628.446038 eV Total energy + Delta-G solvation = -3855.307287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.29758 -41.24723 -39.50300 -37.11285 -36.09202 -34.68440 -34.43043 -32.73455 -30.90985 -29.58867 -27.89495 -27.60115 -26.63423 -25.38946 -23.17540 -23.11102 -22.15349 -21.70470 -20.15239 -19.87399 -18.23219 -17.91872 -17.69292 -17.21070 -17.10577 -16.97423 -16.48577 -16.06082 -15.88615 -15.66470 -15.53455 -15.01000 -14.80179 -14.66669 -14.38231 -14.21176 -14.11956 -13.93290 -13.59915 -13.35998 -13.31116 -13.14850 -13.01779 -12.92919 -12.67614 -12.57987 -12.01810 -11.89432 -11.78908 -11.54381 -11.39038 -11.17573 -11.06583 -10.99464 -10.54527 -10.04526 -9.75135 -9.41296 -9.00156 -8.51898 -6.22877 0.45469 0.98449 1.31259 1.46420 1.54509 1.55659 1.66448 1.86205 2.21573 2.26147 2.71281 2.86212 3.16514 3.32300 3.57321 3.74078 3.80784 3.83612 3.87067 3.95491 3.98037 4.16514 4.23239 4.40966 4.45619 4.48134 4.63431 4.66194 4.73600 4.77743 4.80310 4.84186 4.91352 4.94491 5.02660 5.11007 5.15899 5.21177 5.32500 5.41481 5.67520 5.70295 5.96209 6.10992 6.30813 6.47700 6.74231 6.93144 7.20248 8.60441 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017089 B = 0.001730 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.047780 B =16179.929228 C =16847.383329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.028 4.028 3 N -0.527 5.527 4 C 0.179 3.821 5 O -0.210 6.210 6 C -0.051 4.051 7 C 0.147 3.853 8 N -0.697 5.697 9 C 0.075 3.925 10 C -0.097 4.097 11 C -0.147 4.147 12 C 0.105 3.895 13 N -0.695 5.695 14 C 0.538 3.462 15 O -0.563 6.563 16 C -0.112 4.112 17 S -0.175 6.175 18 C -0.530 4.530 19 H 0.062 0.938 20 C 0.044 3.956 21 N -0.917 5.917 22 Si 0.915 3.085 23 H -0.263 1.263 24 H -0.259 1.259 25 H -0.237 1.237 26 C -0.121 4.121 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.288 0.712 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.345 0.655 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.055 0.945 39 H 0.080 0.920 40 H 0.415 0.585 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.277 0.723 44 H 0.082 0.918 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.152 7.489 33.983 35.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.148 4.148 3 N -0.256 5.256 4 C -0.047 4.047 5 O -0.096 6.096 6 C -0.104 4.104 7 C 0.018 3.982 8 N -0.329 5.329 9 C -0.053 4.053 10 C -0.115 4.115 11 C -0.186 4.186 12 C -0.001 4.001 13 N -0.348 5.348 14 C 0.323 3.677 15 O -0.441 6.441 16 C -0.263 4.263 17 S 0.052 5.948 18 C -0.677 4.677 19 H 0.080 0.920 20 C -0.161 4.161 21 N -0.554 5.554 22 Si 0.737 3.263 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.160 1.160 26 C -0.160 4.160 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.303 0.697 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.163 0.837 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.252 0.748 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.714 7.659 33.871 34.924 hybrid contribution 0.899 0.017 -0.851 1.238 sum 4.613 7.677 33.020 34.213 Atomic orbital electron populations 1.20225 0.85244 1.04120 1.03453 1.21991 0.99090 0.87766 1.05918 1.70380 1.02729 1.32740 1.19801 1.28975 0.98137 0.79304 0.98280 1.84454 1.30512 1.25182 1.69433 1.23383 0.80697 0.98259 1.08082 1.20305 1.01325 0.85272 0.91252 1.60432 1.55967 1.04395 1.12155 1.21962 0.99774 0.87822 0.95769 1.22508 0.96931 0.95733 0.96353 1.23560 0.98604 0.96534 0.99866 1.22019 0.97590 0.98679 0.81768 1.45445 1.11448 1.73600 1.04295 1.19938 0.86857 0.75128 0.85741 1.90681 1.16083 1.49920 1.87396 1.23279 1.02131 1.07279 0.93631 1.84692 1.14827 1.95969 0.99332 1.22465 0.95736 1.57214 0.92305 0.91988 1.25581 1.02974 0.93087 0.94454 1.70017 1.37710 1.48883 0.98835 0.85855 0.79956 0.80203 0.80277 1.18720 1.18289 1.16042 1.23287 0.99139 0.96304 0.97264 0.90308 0.88892 0.90879 0.69689 0.88505 0.89669 0.83721 0.89747 0.93123 0.88985 0.88048 0.92569 0.90134 0.74779 0.87021 0.86798 0.91362 0.89944 0.86844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.22 71.23 0.73 -0.08 16 2 C -0.03 -0.46 7.11 41.26 0.29 -0.17 16 3 N -0.53 -10.00 11.30 -304.07 -3.43 -13.43 16 4 C 0.18 2.40 13.23 130.48 1.73 4.13 16 5 O -0.21 -3.42 10.77 -3.68 -0.04 -3.46 16 6 C -0.05 -0.76 6.90 24.79 0.17 -0.59 16 7 C 0.15 1.38 6.02 85.56 0.52 1.89 16 8 N -0.70 -7.49 6.49 -517.94 -3.36 -10.85 16 9 C 0.07 0.58 5.51 86.30 0.48 1.06 16 10 C -0.10 -1.02 3.77 -10.27 -0.04 -1.06 16 11 C -0.15 -2.16 7.44 31.18 0.23 -1.93 16 12 C 0.10 1.96 4.33 45.58 0.20 2.16 16 13 N -0.70 -15.76 5.26 -439.76 -2.31 -18.08 16 14 C 0.54 18.19 7.85 87.66 0.69 18.88 16 15 O -0.56 -23.81 15.46 -3.02 -0.05 -23.85 16 16 C -0.11 -4.20 6.16 71.24 0.44 -3.77 16 17 S -0.17 -8.84 18.55 -56.49 -1.05 -9.88 16 18 C -0.53 -30.93 10.04 67.95 0.68 -30.25 16 19 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 20 C 0.04 2.62 5.50 84.86 0.47 3.08 16 21 N -0.92 -55.95 13.97 21.65 0.30 -55.65 16 22 Si 0.92 45.11 27.74 68.60 1.90 47.01 16 23 H -0.26 -12.63 7.11 99.48 0.71 -11.93 16 24 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 25 H -0.24 -11.62 6.74 99.48 0.67 -10.95 16 26 C -0.12 -1.29 7.39 31.12 0.23 -1.06 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 0.59 7.16 -2.39 -0.02 0.57 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.29 0.78 8.06 -2.91 -0.02 0.76 16 31 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.09 0.45 7.17 -2.39 -0.02 0.44 16 33 H 0.34 3.98 8.72 -89.69 -0.78 3.20 16 34 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.05 0.28 7.88 -2.38 -0.02 0.26 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.10 1.21 7.92 -2.39 -0.02 1.19 16 38 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.91 7.46 -2.39 -0.02 1.89 16 40 H 0.42 7.01 8.70 -92.71 -0.81 6.20 16 41 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 42 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 43 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 44 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.11 0.83 8.10 -2.39 -0.02 0.81 16 Total: -1.00 -80.48 392.74 -1.84 -82.32 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -0.61 Total: 13.58 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 6.81 Total: -7.70 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -8.81 Total: -98.01 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.09 Total: -27.32 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.90 Total: 47.01 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.88 kcal Total: -80.48 -1.84 -82.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570555374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.792 kcal (2) G-P(sol) polarization free energy of solvation -80.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds