Wall clock time and date at job start Tue Mar 31 2020 22:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41380 * 126.79891 * 2 1 4 4 C 1.35448 * 103.98474 * 180.16903 * 3 2 1 5 5 C 1.50709 * 126.77862 * 179.91026 * 4 3 2 6 6 N 1.46903 * 109.47149 * 89.70615 * 5 4 3 7 7 C 1.47960 * 110.99893 * 190.00258 * 6 5 4 8 8 C 1.53936 * 86.17683 * 222.41479 * 7 6 5 9 9 C 1.53003 * 113.72939 * 138.07996 * 8 7 6 10 10 H 1.09000 * 109.47265 * 305.18782 * 9 8 7 11 11 C 1.53002 * 109.47125 * 185.18843 * 9 8 7 12 12 N 1.46501 * 109.47050 * 65.18618 * 9 8 7 13 13 C 1.34781 * 119.99781 * 204.72150 * 12 9 8 14 14 O 1.21277 * 119.99937 * 0.27872 * 13 12 9 15 15 C 1.50700 * 119.99786 * 180.27918 * 13 12 9 16 16 S 1.80998 * 109.46976 * 180.02562 * 15 13 12 17 17 C 1.76202 * 100.00160 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99387 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00295 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99701 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00237 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47062 * 59.99820 * 21 19 17 23 23 H 1.48503 * 109.47317 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47066 * 299.99933 * 21 19 17 25 25 C 1.48188 * 111.07024 * 90.56760 * 6 5 4 26 26 O 1.34039 * 106.44730 * 359.64143 * 4 3 2 27 27 N 1.20918 * 111.56506 * 0.24692 * 26 4 3 28 28 H 1.08998 * 109.46869 * 270.25646 * 1 2 3 29 29 H 1.08997 * 109.47236 * 30.25453 * 1 2 3 30 30 H 1.08995 * 109.46662 * 150.25762 * 1 2 3 31 31 H 1.08000 * 128.01173 * 0.07224 * 3 2 1 32 32 H 1.09003 * 109.46862 * 329.71113 * 5 4 3 33 33 H 1.09000 * 109.47107 * 209.70650 * 5 4 3 34 34 H 1.08998 * 113.75755 * 108.09647 * 7 6 5 35 35 H 1.08996 * 113.85817 * 336.74795 * 7 6 5 36 36 H 1.08996 * 113.73433 * 269.25297 * 8 7 6 37 37 H 1.08994 * 109.47273 * 175.96585 * 11 9 8 38 38 H 1.08997 * 109.46980 * 295.96934 * 11 9 8 39 39 H 1.08996 * 109.46912 * 55.96289 * 11 9 8 40 40 H 0.96995 * 119.99794 * 25.00183 * 12 9 8 41 41 H 1.09000 * 109.47206 * 300.00182 * 15 13 12 42 42 H 1.08994 * 109.47145 * 59.99825 * 15 13 12 43 43 H 0.97004 * 119.99745 * 179.97438 * 20 19 17 44 44 H 1.08992 * 113.75998 * 23.23933 * 25 6 5 45 45 H 1.08997 * 113.82186 * 251.80857 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6069 -0.0039 5 6 4.9022 1.3697 -0.0075 6 7 5.3250 1.6232 1.3763 7 6 6.4622 2.5690 1.4185 8 6 7.0611 1.6405 2.4904 9 6 8.5640 1.4033 2.3294 10 1 8.7677 1.0317 1.3251 11 6 9.0308 0.3723 3.3590 12 7 9.2824 2.6627 2.5390 13 6 10.4983 2.8449 1.9869 14 8 10.9955 1.9682 1.3124 15 6 11.2400 4.1380 2.2078 16 16 12.8294 4.0770 1.3440 17 6 13.4650 5.6669 1.7598 18 1 12.8850 6.3352 2.3791 19 6 14.7108 6.0606 1.2915 20 7 15.4174 5.2462 0.5363 21 14 15.3842 7.7463 1.7318 22 1 15.5027 7.8621 3.2075 23 1 16.7222 7.9223 1.1120 24 1 14.4629 8.7951 1.2253 25 6 6.1894 0.5292 1.8782 26 8 3.4538 -0.7252 0.0022 27 7 2.2869 -1.0422 0.0042 28 1 -0.3633 0.0046 1.0276 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3632 -0.8923 -0.5098 31 1 2.0709 2.1744 0.0011 32 1 4.7648 2.3191 -0.5251 33 1 5.6658 0.7840 -0.5192 34 1 6.1972 3.5579 1.7924 35 1 7.0405 2.6044 0.4953 36 1 6.7799 1.9077 3.5090 37 1 10.0856 0.1500 3.1981 38 1 8.8930 0.7736 4.3631 39 1 8.4461 -0.5410 3.2495 40 1 8.8847 3.3639 3.0785 41 1 10.6480 4.9672 1.8204 42 1 11.4111 4.2811 3.2746 43 1 16.2880 5.5215 0.2087 44 1 6.6868 -0.0346 1.0891 45 1 5.7069 -0.1085 2.6189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570831229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:29 Heat of formation + Delta-G solvation = 53.470583 kcal Electronic energy + Delta-G solvation = -25877.152994 eV Core-core repulsion = 22025.314738 eV Total energy + Delta-G solvation = -3851.838256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.20847 -40.71645 -39.00669 -35.45179 -35.08360 -33.42541 -32.44283 -31.40751 -29.26115 -29.04285 -28.47510 -26.45630 -25.51030 -25.25531 -23.37285 -22.19116 -20.55296 -20.26941 -19.89451 -17.98231 -17.87651 -17.54823 -16.54972 -16.47286 -16.04599 -15.53742 -15.20626 -14.91852 -14.81698 -14.55539 -14.04395 -13.76963 -13.63380 -13.53607 -13.39366 -13.21346 -13.17541 -12.84669 -12.74161 -12.65663 -12.31623 -11.98473 -11.80537 -11.35094 -11.30746 -11.07646 -11.05532 -11.03426 -10.98866 -10.77473 -10.32245 -9.84192 -9.74743 -9.43666 -9.32634 -9.07667 -8.89452 -8.25760 -6.51680 -6.23029 -3.93805 1.11991 1.90107 2.71502 2.98457 3.07251 3.22257 3.26103 3.28958 3.50602 3.63148 3.85967 3.97703 4.14997 4.19280 4.32719 4.51538 4.71514 4.78060 4.86410 4.92233 4.99370 5.04848 5.06181 5.11880 5.12330 5.16553 5.19738 5.30067 5.33493 5.37729 5.40381 5.44093 5.55274 5.67197 5.74283 5.77728 5.79772 5.86980 6.01469 6.12191 6.19845 6.45358 6.64128 7.57747 7.69866 7.96253 8.33466 8.59909 9.22238 10.84293 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026398 B = 0.001720 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.429168 B =16278.286555 C =16722.385038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.013 3.987 3 C -0.218 4.218 4 C -0.014 4.014 5 C 0.097 3.903 6 N -0.477 5.477 7 C 0.012 3.988 8 C -0.122 4.122 9 C 0.152 3.848 10 H 0.087 0.913 11 C -0.164 4.164 12 N -0.733 5.733 13 C 0.533 3.467 14 O -0.518 6.518 15 C -0.154 4.154 16 S -0.060 6.060 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.012 3.988 26 O 0.098 5.902 27 N -0.367 5.367 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.170 0.830 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.080 0.920 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.704 -7.265 2.456 28.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.146 4.146 3 C -0.240 4.240 4 C -0.078 4.078 5 C -0.032 4.032 6 N -0.200 5.200 7 C -0.117 4.117 8 C -0.141 4.141 9 C 0.047 3.953 10 H 0.105 0.895 11 C -0.222 4.222 12 N -0.387 5.387 13 C 0.320 3.680 14 O -0.392 6.392 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.117 4.117 26 O 0.032 5.968 27 N -0.072 5.072 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.188 0.812 32 H 0.127 0.873 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.124 0.876 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.231 0.769 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -27.538 -9.935 1.524 29.315 hybrid contribution 0.211 3.108 0.849 3.228 sum -27.328 -6.828 2.373 28.268 Atomic orbital electron populations 1.20158 0.85983 1.03726 1.03395 1.23620 0.99059 0.88919 1.03002 1.22380 0.91068 1.01059 1.09512 1.24242 0.98018 0.83505 1.02066 1.21139 0.90399 0.98806 0.92885 1.68580 1.27470 1.07132 1.16862 1.23991 0.90594 0.97905 0.99165 1.23278 0.93637 0.96682 1.00498 1.20896 0.88886 0.85050 1.00499 0.89486 1.22163 1.02608 0.98518 0.98906 1.46040 1.19429 1.18130 1.55137 1.20304 0.80479 0.88853 0.78406 1.90699 1.66438 1.44087 1.37976 1.23535 1.04263 0.96899 1.05752 1.85391 1.09517 1.23034 1.65418 1.22830 1.06176 1.01635 1.37867 0.90985 1.24984 0.95737 0.98216 0.94586 1.70009 1.12351 1.35751 1.32167 0.86231 0.78079 0.82451 0.78777 1.19936 1.20804 1.19952 1.24135 0.93125 0.94428 1.00029 1.84809 1.21629 1.22886 1.67447 1.73849 0.89324 1.24190 1.19884 0.90174 0.90013 0.90616 0.81219 0.87303 0.90931 0.88651 0.90236 0.87590 0.91586 0.92437 0.91869 0.76857 0.89277 0.89266 0.92125 0.90181 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.47 36.01 0.38 -0.05 16 2 C 0.01 0.11 7.33 -82.10 -0.60 -0.49 16 3 C -0.22 -1.76 11.06 -39.38 -0.44 -2.20 16 4 C -0.01 -0.12 7.05 -35.30 -0.25 -0.37 16 5 C 0.10 0.67 5.37 -4.97 -0.03 0.64 16 6 N -0.48 -3.60 6.14 -239.54 -1.47 -5.07 16 7 C 0.01 0.08 7.39 -2.76 -0.02 0.06 16 8 C -0.12 -0.89 3.35 -89.69 -0.30 -1.19 16 9 C 0.15 1.54 2.28 -67.93 -0.16 1.39 16 10 H 0.09 1.05 7.49 -51.93 -0.39 0.66 16 11 C -0.16 -1.65 9.45 37.16 0.35 -1.30 16 12 N -0.73 -8.65 4.95 -53.80 -0.27 -8.92 16 13 C 0.53 9.28 7.81 -10.98 -0.09 9.19 16 14 O -0.52 -11.15 15.53 5.56 0.09 -11.07 16 15 C -0.15 -2.97 6.16 36.01 0.22 -2.74 16 16 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 17 C -0.54 -15.07 9.50 30.94 0.29 -14.77 16 18 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 19 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -25.89 13.22 55.49 0.73 -25.16 16 21 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 C 0.01 0.09 7.35 -2.63 -0.02 0.07 16 26 O 0.10 1.06 11.20 17.18 0.19 1.25 16 27 N -0.37 -4.18 12.07 33.42 0.40 -3.77 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.17 0.98 8.06 -52.49 -0.42 0.55 16 32 H 0.11 0.59 8.08 -51.93 -0.42 0.17 16 33 H 0.07 0.47 7.39 -51.93 -0.38 0.09 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.61 7.88 -51.93 -0.41 0.20 16 36 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.53 7.99 -51.93 -0.42 0.11 16 40 H 0.40 3.60 8.60 -40.82 -0.35 3.25 16 41 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 42 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.08 0.57 7.38 -51.93 -0.38 0.19 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 395.01 15.07 5.95 5.95 Total: -1.00 -35.14 395.01 -9.30 -44.44 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.95 Total: -0.18 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -0.75 Total: -9.77 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: -0.60 Total: -42.92 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.28 Total: -9.81 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.14 -9.30 -44.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570831229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.907 kcal (2) G-P(sol) polarization free energy of solvation -35.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds