Wall clock time and date at job start Tue Mar 31 2020 22:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33819 * 122.44588 * 2 1 4 4 S 1.70615 * 110.95143 * 179.78616 * 3 2 1 5 5 C 1.75827 * 91.56519 * 0.30345 * 4 3 2 6 6 C 1.46587 * 125.45850 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99629 * 185.43135 * 6 5 4 8 8 N 1.34775 * 119.99801 * 5.43586 * 6 5 4 9 9 C 1.46493 * 120.00108 * 354.91856 * 8 6 5 10 10 C 1.46501 * 119.99443 * 174.92092 * 8 6 5 11 11 C 1.52997 * 109.47544 * 84.40675 * 10 8 6 12 12 H 1.09003 * 109.46505 * 297.68220 * 11 10 8 13 13 C 1.52995 * 109.47412 * 177.67558 * 11 10 8 14 14 N 1.46898 * 109.46907 * 57.67378 * 11 10 8 15 15 C 1.46901 * 111.00015 * 204.44645 * 14 11 10 16 16 C 1.50699 * 109.47539 * 180.02562 * 15 14 11 17 17 O 1.21297 * 120.00013 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00430 * 179.97438 * 16 15 14 19 19 C 1.37098 * 120.00291 * 179.97438 * 18 16 15 20 20 H 1.07995 * 119.99717 * 0.02562 * 19 18 16 21 21 C 1.38943 * 119.99913 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00574 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99978 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46995 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47304 * 119.99737 * 23 21 19 26 26 H 1.48494 * 109.47040 * 240.00171 * 23 21 19 27 27 C 1.36651 * 109.07946 * 359.69972 * 5 4 3 28 28 H 1.09001 * 109.46861 * 269.97726 * 1 2 3 29 29 H 1.09002 * 109.47186 * 29.97698 * 1 2 3 30 30 H 1.08996 * 109.47083 * 149.98129 * 1 2 3 31 31 H 1.07997 * 124.52453 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.47447 * 182.96331 * 9 8 6 33 33 H 1.08995 * 109.47391 * 302.96266 * 9 8 6 34 34 H 1.09005 * 109.47176 * 62.96477 * 9 8 6 35 35 H 1.09000 * 109.47470 * 324.39903 * 10 8 6 36 36 H 1.09004 * 109.46544 * 204.40276 * 10 8 6 37 37 H 1.08996 * 109.47128 * 59.99843 * 13 11 10 38 38 H 1.08995 * 109.47009 * 179.97438 * 13 11 10 39 39 H 1.08999 * 109.46941 * 299.99966 * 13 11 10 40 40 H 1.00903 * 111.00478 * 328.40025 * 14 11 10 41 41 H 1.09004 * 109.47067 * 300.00234 * 15 14 11 42 42 H 1.09000 * 109.47549 * 59.99826 * 15 14 11 43 43 H 0.97007 * 119.99781 * 0.02562 * 18 16 15 44 44 H 0.96995 * 120.00600 * 179.97438 * 22 21 19 45 45 H 1.08007 * 123.34376 * 180.24888 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 16 3.8969 0.7893 0.0059 5 6 3.5937 -0.9426 -0.0008 6 6 4.6232 -1.9861 -0.0004 7 8 4.3040 -3.1559 -0.1052 8 7 5.9232 -1.6501 0.1162 9 6 6.3166 -0.2391 0.1304 10 6 6.9428 -2.6961 0.2287 11 6 7.3318 -3.1817 -1.1691 12 1 6.4614 -3.6216 -1.6561 13 6 8.4377 -4.2326 -1.0545 14 7 7.8161 -2.0459 -1.9648 15 6 7.6521 -2.3019 -3.4020 16 6 8.1592 -1.1180 -4.1844 17 8 8.6123 -0.1552 -3.6020 18 7 8.1094 -1.1287 -5.5312 19 6 8.5703 -0.0514 -6.2429 20 1 8.9736 0.8057 -5.7243 21 6 8.5184 -0.0624 -7.6313 22 7 8.0280 -1.1055 -8.2624 23 14 9.1470 1.4052 -8.6011 24 1 9.6454 2.4422 -7.6622 25 1 10.2523 0.9723 -9.4933 26 1 8.0425 1.9682 -9.4186 27 6 2.2446 -1.1599 -0.0004 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.8025 2.1232 0.0004 32 1 7.4031 -0.1652 0.1777 33 1 5.9587 0.2471 -0.7771 34 1 5.8809 0.2509 1.0011 35 1 6.5449 -3.5309 0.8057 36 1 7.8223 -2.2935 0.7312 37 1 8.0784 -5.0754 -0.4641 38 1 8.7145 -4.5788 -2.0503 39 1 9.3080 -3.7926 -0.5675 40 1 7.3527 -1.1912 -1.6946 41 1 8.2192 -3.1904 -3.6798 42 1 6.5969 -2.4601 -3.6249 43 1 7.7467 -1.8985 -5.9969 44 1 7.9914 -1.1130 -9.2316 45 1 1.8020 -2.1452 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571385662.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:32 Heat of formation + Delta-G solvation = -57.880544 kcal Electronic energy + Delta-G solvation = -27157.200692 eV Core-core repulsion = 23300.533889 eV Total energy + Delta-G solvation = -3856.666803 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.30594 -40.18431 -39.17493 -38.00827 -36.19582 -35.80133 -33.32428 -32.64174 -31.72526 -29.05004 -28.33277 -28.16593 -27.46483 -25.85896 -24.50241 -21.92629 -21.16726 -20.78811 -20.02257 -19.93204 -18.92391 -17.99705 -17.52862 -17.20466 -17.08529 -16.52842 -16.42775 -16.15191 -15.81291 -15.53860 -15.26949 -14.73187 -14.61075 -14.31498 -14.21916 -14.10268 -13.87334 -13.80831 -13.51208 -13.39430 -13.15845 -12.97685 -12.91882 -12.87784 -12.80682 -12.73895 -12.56990 -12.39986 -12.10259 -12.01609 -11.52176 -11.48600 -11.23540 -10.37691 -10.11651 -10.03415 -9.68846 -9.44646 -9.28983 -8.47350 -5.96661 -0.51539 0.50046 1.00838 1.29938 1.36486 1.41893 1.56510 1.78895 2.01193 2.04743 2.28129 2.85472 3.19363 3.38425 3.49293 3.85127 3.97983 4.06240 4.16232 4.19300 4.21158 4.29103 4.36534 4.38200 4.41766 4.50241 4.55760 4.66443 4.70957 4.73129 4.81961 4.87400 4.93012 5.03104 5.03361 5.25158 5.38962 5.40397 5.45226 5.46871 5.83371 6.03175 6.11526 6.36233 6.57157 6.89036 7.10406 7.53010 8.06762 8.70455 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010283 B = 0.003078 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.383637 B = 9093.778694 C =10750.287592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.133 4.133 3 C -0.258 4.258 4 S 0.263 5.737 5 C -0.304 4.304 6 C 0.583 3.417 7 O -0.567 6.567 8 N -0.610 5.610 9 C 0.050 3.950 10 C 0.120 3.880 11 C 0.065 3.935 12 H 0.029 0.971 13 C -0.132 4.132 14 N -0.666 5.666 15 C 0.063 3.937 16 C 0.441 3.559 17 O -0.615 6.615 18 N -0.573 5.573 19 C -0.331 4.331 20 H 0.083 0.917 21 C -0.015 4.015 22 N -0.923 5.923 23 Si 0.995 3.005 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.271 1.271 27 C -0.059 4.059 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.189 0.811 32 H 0.116 0.884 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.070 0.930 40 H 0.343 0.657 41 H 0.102 0.898 42 H 0.046 0.954 43 H 0.394 0.606 44 H 0.277 0.723 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.809 0.969 19.810 22.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.145 4.145 3 C -0.395 4.395 4 S 0.534 5.466 5 C -0.424 4.424 6 C 0.373 3.627 7 O -0.449 6.449 8 N -0.342 5.342 9 C -0.094 4.094 10 C -0.002 4.002 11 C -0.046 4.046 12 H 0.047 0.953 13 C -0.190 4.190 14 N -0.301 5.301 15 C -0.070 4.070 16 C 0.229 3.771 17 O -0.501 6.501 18 N -0.210 5.210 19 C -0.461 4.461 20 H 0.101 0.899 21 C -0.214 4.214 22 N -0.564 5.564 23 Si 0.818 3.182 24 H -0.194 1.194 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.094 4.094 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.206 0.794 32 H 0.135 0.865 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.134 0.866 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.164 0.836 41 H 0.120 0.880 42 H 0.064 0.936 43 H 0.228 0.772 44 H 0.087 0.913 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.713 1.711 19.978 21.863 hybrid contribution -2.291 -0.673 -1.311 2.724 sum -11.004 1.039 18.667 21.694 Atomic orbital electron populations 1.20566 0.87958 1.03475 1.03174 1.18966 0.99177 0.91027 1.05375 1.26081 1.01632 1.04217 1.07552 1.83518 1.01617 0.95439 1.66060 1.24576 0.97891 0.98727 1.21180 1.17330 0.82238 0.87303 0.75836 1.90783 1.82075 1.20118 1.51920 1.47803 1.05645 1.08540 1.72174 1.22230 1.04449 0.79720 1.02965 1.21890 0.91037 0.91291 0.95989 1.22028 0.96504 0.92062 0.93969 0.95312 1.21696 0.97912 0.97192 1.02207 1.60346 1.62582 1.05675 1.01447 1.21562 0.99232 0.96767 0.89443 1.20634 0.83977 0.89865 0.82666 1.90464 1.51844 1.37873 1.69908 1.41958 1.55492 1.18491 1.05082 1.19735 1.39317 0.97549 0.89475 0.89895 1.26097 0.97064 1.01077 0.97209 1.69690 1.45882 1.30741 1.10040 0.84839 0.78116 0.77437 0.77761 1.19395 1.19691 1.19672 1.20769 0.91171 1.00455 0.96978 0.90152 0.90387 0.91352 0.79375 0.86524 0.91771 0.88702 0.88929 0.86569 0.90574 0.93206 0.91076 0.83614 0.88004 0.93635 0.77236 0.91321 0.83786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.24 10.13 71.24 0.72 -0.52 16 2 C -0.13 -2.53 5.78 -21.05 -0.12 -2.65 16 3 C -0.26 -4.36 10.67 66.81 0.71 -3.65 16 4 S 0.26 4.84 17.58 -56.49 -0.99 3.85 16 5 C -0.30 -7.57 6.33 24.08 0.15 -7.42 16 6 C 0.58 16.70 7.59 86.42 0.66 17.36 16 7 O -0.57 -19.80 16.48 -4.36 -0.07 -19.87 16 8 N -0.61 -14.45 2.52 -851.63 -2.15 -16.60 16 9 C 0.05 0.96 6.96 127.77 0.89 1.85 16 10 C 0.12 2.63 4.96 86.38 0.43 3.06 16 11 C 0.06 1.73 2.89 44.91 0.13 1.86 16 12 H 0.03 0.90 7.71 -2.39 -0.02 0.89 16 13 C -0.13 -2.94 9.41 71.98 0.68 -2.26 16 14 N -0.67 -21.80 5.93 -495.58 -2.94 -24.74 16 15 C 0.06 2.35 5.97 85.56 0.51 2.86 16 16 C 0.44 21.43 7.82 87.66 0.69 22.12 16 17 O -0.61 -33.43 15.78 -3.08 -0.05 -33.48 16 18 N -0.57 -30.08 5.29 -306.99 -1.62 -31.71 16 19 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 20 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 21 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 22 N -0.92 -50.52 13.05 21.66 0.28 -50.24 16 23 Si 1.00 42.88 29.55 68.60 2.03 44.91 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 27 C -0.06 -1.38 9.80 21.71 0.21 -1.17 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 29 H 0.08 0.85 8.12 -2.39 -0.02 0.83 16 30 H 0.07 0.90 8.13 -2.39 -0.02 0.88 16 31 H 0.19 2.16 8.06 -2.91 -0.02 2.13 16 32 H 0.12 2.02 7.50 -2.39 -0.02 2.01 16 33 H 0.06 1.41 6.30 -8.20 -0.05 1.35 16 34 H 0.10 1.37 6.46 -7.41 -0.05 1.32 16 35 H 0.09 1.99 7.67 -2.39 -0.02 1.97 16 36 H 0.12 1.98 7.83 -2.39 -0.02 1.96 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.05 1.20 7.42 -2.39 -0.02 1.19 16 39 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.34 11.40 5.26 -89.69 -0.47 10.93 16 41 H 0.10 3.52 7.40 -2.38 -0.02 3.51 16 42 H 0.05 1.68 8.06 -2.39 -0.02 1.66 16 43 H 0.39 20.00 7.90 -92.70 -0.73 19.27 16 44 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 45 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -72.60 382.75 1.17 -71.43 By element: Atomic # 1 Polarization: 43.67 SS G_CDS: -0.25 Total: 43.42 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 6.93 Total: 13.04 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -6.43 Total: -123.28 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -0.12 Total: -53.36 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -0.99 Total: 3.85 kcal Total: -72.60 1.17 -71.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571385662.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.545 kcal (2) G-P(sol) polarization free energy of solvation -72.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds