Wall clock time and date at job start Tue Mar 31 2020 22:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40429 * 107.86663 * 179.88433 * 3 2 1 5 5 N 1.40083 * 125.97420 * 180.17005 * 4 3 2 6 6 C 1.34772 * 120.00193 * 0.27604 * 5 4 3 7 7 O 1.21567 * 119.99862 * 359.97438 * 6 5 4 8 8 C 1.47831 * 120.00189 * 179.97438 * 6 5 4 9 9 C 1.39695 * 120.07656 * 359.72660 * 8 6 5 10 10 C 1.38041 * 120.13725 * 179.71590 * 9 8 6 11 11 C 1.38107 * 120.30038 * 0.55884 * 10 9 8 12 12 C 1.39621 * 120.15386 * 359.71966 * 11 10 9 13 13 C 1.43195 * 120.07305 * 179.97438 * 12 11 10 14 14 C 9.87538 * 120.94963 * 0.31165 * 2 1 3 15 15 C 9.76495 * 140.50326 * 180.50436 * 3 1 2 16 16 O 1.42896 * 109.47393 * 273.85704 * 15 14 13 17 17 C 1.39310 * 119.85454 * 359.97438 * 12 11 10 18 18 N 1.31234 * 108.04785 * 0.38170 * 4 3 2 19 19 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 20 20 C 1.46499 * 125.97289 * 359.95817 * 19 2 1 21 21 C 1.50699 * 109.47148 * 90.00237 * 20 19 2 22 22 H 1.07995 * 120.00097 * 359.97438 * 21 20 19 23 23 C 1.37877 * 119.99909 * 179.97438 * 21 20 19 24 24 N 1.31509 * 120.00165 * 179.97438 * 23 21 20 25 25 Si 1.86808 * 119.99831 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47018 * 90.00394 * 25 23 21 27 27 H 1.48500 * 109.46754 * 210.00005 * 25 23 21 28 28 H 1.48492 * 109.47142 * 330.00051 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 32 32 H 1.07996 * 126.06827 * 359.97438 * 3 2 1 33 33 H 0.97004 * 119.99869 * 180.27089 * 5 4 3 34 34 H 1.08001 * 119.92550 * 0.02562 * 9 8 6 35 35 H 1.07999 * 119.84602 * 180.25472 * 10 9 8 36 36 H 1.08000 * 119.92498 * 179.73846 * 11 10 9 37 37 H 1.08994 * 109.47167 * 33.86018 * 15 14 13 38 38 H 1.09006 * 109.47019 * 153.85776 * 15 14 13 39 39 H 0.96701 * 114.00432 * 179.97438 * 16 15 14 40 40 H 1.07998 * 120.14504 * 180.02562 * 17 12 11 41 41 H 1.09005 * 109.47089 * 210.00172 * 20 19 2 42 42 H 1.09001 * 109.46954 * 329.99540 * 20 19 2 43 43 H 0.97007 * 120.00001 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0027 5 7 4.7730 1.4744 0.0069 6 6 4.6363 2.8151 0.0144 7 8 3.5272 3.3130 0.0170 8 6 5.8349 3.6804 0.0195 9 6 7.1101 3.1100 0.0223 10 6 8.2302 3.9168 0.0211 11 6 8.0987 5.2916 0.0287 12 6 6.8302 5.8748 0.0318 13 6 6.6959 7.3004 0.0403 14 6 6.5858 8.4692 0.0461 15 6 6.4477 9.9347 0.0547 16 8 6.4940 10.4097 1.4016 17 6 5.6954 5.0668 0.0266 18 7 3.6337 -0.6578 -0.0041 19 7 2.3016 -1.0910 -0.0059 20 6 1.8499 -2.4846 -0.0126 21 6 1.6942 -2.9554 -1.4357 22 1 1.9098 -2.2836 -2.2533 23 6 1.2766 -4.2438 -1.6938 24 7 1.1402 -4.6545 -2.9356 25 14 0.9044 -5.4060 -0.2794 26 1 -0.5263 -5.2829 0.0990 27 1 1.1872 -6.8022 -0.6986 28 1 1.7564 -5.0567 0.8855 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9719 2.1210 -0.0004 33 1 5.6580 1.0771 0.0046 34 1 7.2197 2.0356 0.0203 35 1 9.2138 3.4708 0.0191 36 1 8.9792 5.9170 0.0320 37 1 7.2629 10.3798 -0.5157 38 1 5.4949 10.2126 -0.3960 39 1 6.4092 11.3695 1.4834 40 1 4.7119 5.5129 0.0286 41 1 2.5848 -3.1072 0.4977 42 1 0.8916 -2.5583 0.5015 43 1 0.8460 -5.5609 -3.1172 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598112162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:57 Heat of formation + Delta-G solvation = 51.324998 kcal Electronic energy + Delta-G solvation = -26538.301220 eV Core-core repulsion = 22550.925973 eV Total energy + Delta-G solvation = -3987.375247 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.43851 -41.23929 -39.59230 -37.99252 -36.49757 -35.38506 -34.93254 -33.39754 -32.83951 -32.25236 -31.78846 -29.07635 -27.93775 -27.72871 -25.77833 -24.38180 -23.90929 -22.56166 -21.36224 -21.07343 -19.43569 -19.23710 -18.49017 -17.89055 -17.63179 -17.24414 -17.09519 -16.69756 -16.29552 -16.12999 -16.08956 -15.72679 -15.51061 -15.19054 -14.92196 -14.75508 -14.46966 -14.24133 -13.92155 -13.78015 -13.67357 -13.32054 -13.24142 -12.99746 -12.80231 -12.56709 -12.53331 -12.31209 -12.09478 -11.93891 -11.84637 -11.63477 -11.48720 -11.10566 -10.89511 -10.67165 -10.17514 -9.71788 -9.64062 -9.16155 -8.40640 -6.52196 -0.47402 -0.09886 0.91389 1.18829 1.35487 1.36157 1.39050 1.46519 1.49257 1.72712 2.17740 2.22993 2.26806 2.77663 2.91635 2.94602 3.36228 3.75931 3.83068 3.84172 3.96512 4.05440 4.06823 4.25121 4.32292 4.41034 4.45066 4.53734 4.55240 4.67509 4.69730 4.75394 4.83067 4.90515 4.93268 5.05340 5.11149 5.21851 5.22375 5.24736 5.28033 5.69608 5.80434 5.96666 6.15368 6.34331 6.36016 6.51526 6.84746 6.89087 6.97470 7.11860 8.75943 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023961 B = 0.001830 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.285456 B =15298.997866 C =16009.182923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.092 3.908 3 C -0.301 4.301 4 C 0.273 3.727 5 N -0.617 5.617 6 C 0.566 3.434 7 O -0.544 6.544 8 C -0.140 4.140 9 C -0.068 4.068 10 C -0.111 4.111 11 C -0.058 4.058 12 C -0.011 4.011 13 C -0.149 4.149 14 C -0.166 4.166 15 C 0.188 3.812 16 O -0.593 6.593 17 C -0.044 4.044 18 N -0.350 5.350 19 N -0.340 5.340 20 C 0.241 3.759 21 C -0.552 4.552 22 H 0.023 0.977 23 C 0.022 3.978 24 N -0.937 5.937 25 Si 0.951 3.049 26 H -0.250 1.250 27 H -0.278 1.278 28 H -0.244 1.244 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.166 0.834 33 H 0.425 0.575 34 H 0.155 0.845 35 H 0.177 0.823 36 H 0.157 0.843 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.411 0.589 40 H 0.126 0.874 41 H 0.051 0.949 42 H 0.073 0.927 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.907 25.554 8.966 30.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.038 4.038 3 C -0.331 4.331 4 C 0.019 3.981 5 N -0.266 5.266 6 C 0.355 3.645 7 O -0.421 6.421 8 C -0.144 4.144 9 C -0.086 4.086 10 C -0.128 4.128 11 C -0.076 4.076 12 C -0.011 4.011 13 C -0.150 4.150 14 C -0.166 4.166 15 C 0.111 3.889 16 O -0.404 6.404 17 C -0.063 4.063 18 N -0.180 5.180 19 N -0.123 5.123 20 C 0.121 3.879 21 C -0.590 4.590 22 H 0.042 0.958 23 C -0.177 4.177 24 N -0.575 5.575 25 Si 0.772 3.228 26 H -0.174 1.174 27 H -0.203 1.203 28 H -0.168 1.168 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.183 0.817 33 H 0.265 0.735 34 H 0.173 0.827 35 H 0.194 0.806 36 H 0.175 0.825 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.263 0.737 40 H 0.144 0.856 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.835 23.982 8.967 29.103 hybrid contribution -0.473 0.216 -0.367 0.636 sum 13.362 24.198 8.600 28.949 Atomic orbital electron populations 1.20560 0.85042 1.04510 1.04572 1.21759 0.96781 0.86278 0.98951 1.21468 0.90074 1.00096 1.21510 1.19244 0.88605 0.89288 1.00937 1.42365 1.07284 1.04793 1.72180 1.18680 0.89736 0.80785 0.75262 1.90697 1.27698 1.74357 1.49331 1.19437 0.92519 0.92969 1.09438 1.21819 0.90598 1.01906 0.94299 1.21464 1.00151 0.92379 0.98813 1.21809 0.96049 0.96031 0.93743 1.15893 0.94060 0.86237 1.04876 1.19446 1.03752 0.91656 1.00114 1.22763 0.98501 0.94449 1.00872 1.19053 1.03457 0.81839 0.84506 1.86486 1.97167 1.30335 1.26450 1.21242 0.98891 0.91785 0.94378 1.77170 0.99827 1.09667 1.31375 1.48460 1.01795 1.07136 1.54862 1.19804 0.96517 0.74470 0.97067 1.21246 1.47898 0.98770 0.91116 0.95846 1.25830 0.93674 0.99230 0.99004 1.70035 1.46803 1.19221 1.21427 0.85676 0.80497 0.77675 0.78977 1.17450 1.20345 1.16754 0.87907 0.91160 0.88355 0.81712 0.73516 0.82716 0.80565 0.82494 0.87859 0.88614 0.73671 0.85642 0.93089 0.90888 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.87 9.89 71.24 0.70 -2.16 16 2 C 0.09 3.84 6.92 41.38 0.29 4.13 16 3 C -0.30 -12.49 9.52 22.11 0.21 -12.28 16 4 C 0.27 11.21 8.11 133.35 1.08 12.29 16 5 N -0.62 -19.28 5.40 -310.13 -1.67 -20.96 16 6 C 0.57 17.37 7.74 86.78 0.67 18.04 16 7 O -0.54 -20.32 13.46 -3.93 -0.05 -20.37 16 8 C -0.14 -3.24 5.87 -20.12 -0.12 -3.36 16 9 C -0.07 -1.04 9.54 22.58 0.22 -0.83 16 10 C -0.11 -1.23 10.02 22.19 0.22 -1.01 16 11 C -0.06 -0.81 9.74 22.57 0.22 -0.59 16 12 C -0.01 -0.22 5.72 -21.44 -0.12 -0.34 16 13 C -0.15 -3.25 13.23 30.01 0.40 -2.86 16 14 C -0.17 -3.18 13.73 31.13 0.43 -2.76 16 15 C 0.19 1.89 7.52 70.18 0.53 2.42 16 16 O -0.59 -7.16 13.62 -148.98 -2.03 -9.18 16 17 C -0.04 -1.05 9.29 22.79 0.21 -0.83 16 18 N -0.35 -16.14 12.59 -54.48 -0.69 -16.82 16 19 N -0.34 -15.93 3.59 -338.44 -1.22 -17.14 16 20 C 0.24 11.50 4.88 85.63 0.42 11.92 16 21 C -0.55 -31.75 9.94 25.60 0.25 -31.49 16 22 H 0.02 1.57 8.06 -2.91 -0.02 1.54 16 23 C 0.02 1.26 5.47 84.66 0.46 1.72 16 24 N -0.94 -56.95 13.96 21.45 0.30 -56.65 16 25 Si 0.95 40.64 27.47 68.60 1.88 42.53 16 26 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 27 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 28 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 29 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.07 2.47 7.71 -2.39 -0.02 2.45 16 31 H 0.10 2.76 8.14 -2.38 -0.02 2.74 16 32 H 0.17 6.69 5.91 -2.91 -0.02 6.67 16 33 H 0.43 10.18 6.85 -92.71 -0.63 9.55 16 34 H 0.16 1.66 6.39 -2.91 -0.02 1.64 16 35 H 0.18 0.67 8.06 -2.91 -0.02 0.64 16 36 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.41 0.15 9.12 -74.06 -0.68 -0.53 16 40 H 0.13 3.31 7.65 -2.91 -0.02 3.29 16 41 H 0.05 2.41 7.20 -2.38 -0.02 2.39 16 42 H 0.07 3.07 7.08 -2.39 -0.02 3.05 16 43 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 Total: -1.00 -85.17 380.91 2.32 -82.84 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: -0.27 Total: 23.75 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 6.07 Total: -7.99 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -3.28 Total: -111.57 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -2.08 Total: -29.56 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 1.88 Total: 42.53 kcal Total: -85.17 2.32 -82.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598112162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.170 kcal (2) G-P(sol) polarization free energy of solvation -85.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds