Wall clock time and date at job start Tue Mar 31 2020 22:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 S 1.75505 * 124.71203 * 2 1 4 4 C 1.70444 * 92.44545 * 180.08168 * 3 2 1 5 5 C 1.36014 * 110.81789 * 359.70088 * 4 3 2 6 6 C 1.47190 * 123.46278 * 180.24944 * 5 4 3 7 7 O 1.21635 * 119.99941 * 179.97438 * 6 5 4 8 8 N 1.34769 * 119.99768 * 359.97438 * 6 5 4 9 9 C 1.46503 * 119.99689 * 179.97438 * 8 6 5 10 10 C 1.53009 * 109.46929 * 179.97438 * 9 8 6 11 11 N 1.46899 * 109.46810 * 180.02562 * 10 9 8 12 12 C 1.46899 * 110.99922 * 66.04775 * 11 10 9 13 13 C 1.46899 * 110.99873 * 190.00340 * 11 10 9 14 14 C 1.50700 * 109.47178 * 170.00152 * 13 11 10 15 15 O 1.21295 * 120.00015 * 359.97438 * 14 13 11 16 16 N 1.34776 * 120.00074 * 179.97438 * 14 13 11 17 17 C 1.37093 * 120.00357 * 179.97438 * 16 14 13 18 18 H 1.08003 * 120.00030 * 0.02562 * 17 16 14 19 19 C 1.38953 * 120.00426 * 180.02562 * 17 16 14 20 20 N 1.31411 * 119.99668 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00225 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46931 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47201 * 119.99491 * 21 19 17 24 24 H 1.48502 * 109.46887 * 239.99695 * 21 19 17 25 25 C 1.32763 * 124.70938 * 179.75360 * 2 1 3 26 26 C 1.50698 * 123.46421 * 359.97312 * 25 2 1 27 27 H 1.08995 * 109.47070 * 270.24891 * 1 2 3 28 28 H 1.09001 * 109.46803 * 30.25075 * 1 2 3 29 29 H 1.08995 * 109.46829 * 150.24647 * 1 2 3 30 30 H 1.08002 * 124.59503 * 179.97438 * 4 3 2 31 31 H 0.97004 * 120.00627 * 0.02562 * 8 6 5 32 32 H 1.08996 * 109.47255 * 299.99583 * 9 8 6 33 33 H 1.08998 * 109.46830 * 60.00441 * 9 8 6 34 34 H 1.08996 * 109.46880 * 299.99897 * 10 9 8 35 35 H 1.08998 * 109.46935 * 60.00590 * 10 9 8 36 36 H 1.08999 * 109.47456 * 60.00086 * 12 11 10 37 37 H 1.09011 * 109.46727 * 179.97438 * 12 11 10 38 38 H 1.08997 * 109.47115 * 299.99509 * 12 11 10 39 39 H 1.09000 * 109.46808 * 289.99707 * 13 11 10 40 40 H 1.08990 * 109.47347 * 49.99802 * 13 11 10 41 41 H 0.97001 * 119.99907 * 0.02562 * 16 14 13 42 42 H 0.96997 * 119.99931 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.47215 * 270.03127 * 26 25 2 44 44 H 1.08995 * 109.46944 * 30.02462 * 26 25 2 45 45 H 1.09003 * 109.47387 * 150.02651 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5065 1.4427 0.0000 4 6 3.9477 0.5328 -0.0024 5 6 3.6778 -0.8003 0.0034 6 6 4.7202 -1.8395 0.0084 7 8 4.4072 -3.0148 0.0140 8 7 6.0214 -1.4886 0.0067 9 6 7.0589 -2.5229 0.0122 10 6 8.4386 -1.8613 0.0083 11 7 9.4789 -2.8985 0.0132 12 6 9.4581 -3.6708 -1.2362 13 6 10.8053 -2.3124 0.2479 14 6 11.8052 -3.4136 0.4904 15 8 11.4479 -4.5725 0.4703 16 7 13.0965 -3.1106 0.7297 17 6 14.0060 -4.1122 0.9509 18 1 13.6879 -5.1442 0.9330 19 6 15.3372 -3.7998 1.1982 20 7 15.7244 -2.5442 1.2195 21 14 16.5766 -5.1647 1.4988 22 1 15.8925 -6.4804 1.4215 23 1 17.6439 -5.1000 0.4684 24 1 17.1786 -4.9986 2.8462 25 6 2.2630 -1.0914 0.0047 26 6 1.7028 -2.4903 0.0113 27 1 -0.3633 0.0045 1.0276 28 1 -0.3633 0.8877 -0.5177 29 1 -0.3633 -0.8922 -0.5100 30 1 4.9408 0.9572 -0.0036 31 1 6.2710 -0.5512 0.0026 32 1 6.9534 -3.1386 0.9054 33 1 6.9535 -3.1479 -0.8746 34 1 8.5438 -1.2459 -0.8851 35 1 8.5442 -1.2361 0.8948 36 1 9.6345 -3.0029 -2.0793 37 1 10.2385 -4.4314 -1.2062 38 1 8.4863 -4.1512 -1.3503 39 1 11.1066 -1.7340 -0.6255 40 1 10.7651 -1.6597 1.1198 41 1 13.3822 -2.1837 0.7462 42 1 16.6537 -2.3262 1.3918 43 1 1.5675 -2.8227 1.0406 44 1 0.7415 -2.4991 -0.5025 45 1 2.3939 -3.1610 -0.4993 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663189575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:38 Heat of formation + Delta-G solvation = -38.646156 kcal Electronic energy + Delta-G solvation = -25778.825185 eV Core-core repulsion = 21922.992447 eV Total energy + Delta-G solvation = -3855.832738 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.25404 -38.71382 -37.83728 -36.72274 -34.77761 -33.83578 -32.80977 -31.25670 -29.82863 -29.39338 -27.72304 -26.10437 -25.34490 -24.61572 -23.43835 -21.26790 -20.56254 -19.17788 -18.88145 -17.93149 -17.80444 -17.20177 -16.15324 -15.96936 -15.81280 -15.17267 -14.87779 -14.73586 -14.58446 -14.41302 -14.01360 -13.92816 -13.52519 -13.42018 -13.25909 -13.07015 -12.93545 -12.88404 -12.46684 -12.20587 -12.13753 -11.95936 -11.85508 -11.52799 -11.41466 -11.28719 -11.18396 -11.06246 -10.95723 -10.34091 -10.22854 -9.99543 -9.49294 -9.26942 -9.02521 -8.68389 -8.48903 -7.99635 -7.89925 -6.42362 -3.82977 0.37724 1.12282 1.51920 1.64635 2.86796 3.12826 3.16261 3.27044 3.34497 3.89390 4.04051 4.22443 4.27115 4.56206 4.67556 4.81605 4.87700 4.92105 5.00251 5.07583 5.11401 5.23585 5.24568 5.34730 5.37464 5.46122 5.56173 5.62151 5.68042 5.72477 5.82527 5.87952 5.91822 5.94102 5.99690 6.19767 6.26805 6.31979 6.55084 7.17466 7.26912 7.32091 7.55266 8.02258 8.06159 8.61250 9.17948 9.53771 10.05606 10.75483 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033591 B = 0.001604 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.352243 B =17448.591703 C =18036.983113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.212 4.212 3 S 0.181 5.819 4 C -0.215 4.215 5 C -0.145 4.145 6 C 0.576 3.424 7 O -0.528 6.528 8 N -0.724 5.724 9 C 0.123 3.877 10 C 0.044 3.956 11 N -0.515 5.515 12 C 0.018 3.982 13 C 0.047 3.953 14 C 0.444 3.556 15 O -0.576 6.576 16 N -0.564 5.564 17 C -0.298 4.298 18 H 0.104 0.896 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.056 4.056 26 C -0.100 4.100 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.170 0.830 31 H 0.397 0.603 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.079 0.921 36 H 0.015 0.985 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.089 0.911 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.745 12.787 -3.944 30.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.328 4.328 3 S 0.450 5.550 4 C -0.353 4.353 5 C -0.163 4.163 6 C 0.362 3.638 7 O -0.406 6.406 8 N -0.376 5.376 9 C -0.001 4.001 10 C -0.085 4.085 11 N -0.239 5.239 12 C -0.130 4.130 13 C -0.084 4.084 14 C 0.229 3.771 15 O -0.460 6.460 16 N -0.201 5.201 17 C -0.428 4.428 18 H 0.122 0.878 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.067 4.067 26 C -0.159 4.159 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.187 0.813 31 H 0.231 0.769 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.034 0.966 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.107 0.893 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -28.396 12.464 -3.534 31.211 hybrid contribution 1.828 -0.237 -0.443 1.895 sum -26.568 12.227 -3.978 29.516 Atomic orbital electron populations 1.20337 0.87447 1.03228 1.02852 1.24156 1.00440 0.95541 1.12699 1.82986 0.93627 1.08302 1.70135 1.25582 1.04765 0.97577 1.07359 1.20139 0.93985 0.92389 1.09831 1.17540 0.81831 0.87965 0.76502 1.90769 1.81746 1.18591 1.49487 1.45798 1.05657 1.10454 1.75673 1.21366 0.85003 0.89997 1.03698 1.22254 0.91217 0.93864 1.01141 1.61438 1.02783 1.23092 1.36562 1.22635 1.03895 0.98639 0.87826 1.21869 0.88920 0.96448 1.01189 1.19702 0.83118 0.89730 0.84555 1.90497 1.78765 1.20539 1.56165 1.41865 1.06221 1.09826 1.62211 1.19760 0.87983 0.90081 1.44935 0.87816 1.25260 0.98025 0.97263 0.97418 1.69618 1.18076 1.16893 1.49791 0.85797 0.79905 0.80823 0.77814 1.19196 1.20797 1.20760 1.19734 0.90210 0.96768 0.99940 1.20670 1.00786 0.91502 1.02919 0.90684 0.91346 0.90259 0.81298 0.76924 0.90014 0.90953 0.94582 0.90286 0.96625 0.88338 0.91800 0.93353 0.89325 0.77519 0.91948 0.90979 0.91853 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.04 36.01 0.36 -0.05 16 2 C -0.21 -1.63 6.44 -36.18 -0.23 -1.86 16 3 S 0.18 1.16 23.00 -107.50 -2.47 -1.31 16 4 C -0.21 -1.60 10.38 29.93 0.31 -1.29 16 5 C -0.14 -1.47 5.98 -104.62 -0.63 -2.09 16 6 C 0.58 7.03 7.79 -12.63 -0.10 6.93 16 7 O -0.53 -8.18 14.21 5.25 0.07 -8.11 16 8 N -0.72 -7.35 5.52 -61.45 -0.34 -7.69 16 9 C 0.12 1.49 5.60 -4.04 -0.02 1.47 16 10 C 0.04 0.53 5.07 -3.82 -0.02 0.51 16 11 N -0.51 -8.40 4.50 -244.37 -1.10 -9.50 16 12 C 0.02 0.29 8.96 60.06 0.54 0.83 16 13 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 14 C 0.44 10.37 7.47 -10.99 -0.08 10.29 16 15 O -0.58 -15.44 13.91 5.54 0.08 -15.36 16 16 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 17 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 18 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 21 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 C -0.06 -0.54 6.01 -104.06 -0.63 -1.17 16 26 C -0.10 -0.94 9.27 36.00 0.33 -0.60 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.36 6.66 -51.93 -0.35 0.02 16 30 H 0.17 0.81 7.01 -52.49 -0.37 0.44 16 31 H 0.40 2.83 6.97 -40.82 -0.28 2.54 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 0.95 6.55 -51.93 -0.34 0.61 16 34 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 35 H 0.08 0.84 7.93 -51.93 -0.41 0.43 16 36 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.10 1.95 5.83 -51.92 -0.30 1.65 16 38 H 0.06 0.94 6.47 -51.93 -0.34 0.60 16 39 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 40 H 0.09 1.37 7.93 -51.93 -0.41 0.96 16 41 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 42 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.45 6.64 -51.93 -0.35 0.10 16 45 H 0.09 1.07 6.02 -51.93 -0.31 0.75 16 LS Contribution 382.32 15.07 5.76 5.76 Total: -1.00 -33.49 382.32 -9.03 -42.53 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -6.25 Total: 9.80 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -0.43 Total: 5.82 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.77 Total: -55.12 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.15 Total: -23.47 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.47 Total: -1.31 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.49 -9.03 -42.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663189575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.879 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds