Wall clock time and date at job start Tue Mar 31 2020 22:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.41379 * 126.80590 * 2 1 4 4 C 1.35451 * 103.99089 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.77702 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.47066 * 90.00119 * 5 4 3 7 7 C 1.46901 * 110.99870 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46916 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.46893 * 294.99849 * 8 7 6 10 10 N 1.46498 * 109.46921 * 54.99831 * 8 7 6 11 11 C 1.34779 * 119.99331 * 204.99566 * 10 8 7 12 12 O 1.21273 * 120.00521 * 0.02562 * 11 10 8 13 13 C 1.50701 * 119.99711 * 179.97438 * 11 10 8 14 14 S 1.80994 * 109.47189 * 180.02562 * 13 11 10 15 15 C 1.76205 * 100.00262 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99288 * 0.02562 * 15 14 13 17 17 C 1.38793 * 120.00380 * 179.97438 * 15 14 13 18 18 N 1.31632 * 119.99969 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00320 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46800 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47312 * 120.00176 * 19 17 15 22 22 H 1.48500 * 109.46903 * 240.00597 * 19 17 15 23 23 C 1.52997 * 109.46820 * 175.00024 * 8 7 6 24 24 C 1.53008 * 117.49704 * 248.74429 * 23 8 7 25 25 C 1.52998 * 117.49681 * 180.08675 * 23 8 7 26 26 O 1.34044 * 106.44439 * 0.24015 * 4 3 2 27 27 N 1.20926 * 111.56681 * 359.56695 * 26 4 3 28 28 H 1.08994 * 109.47351 * 90.00385 * 1 2 3 29 29 H 1.09005 * 109.47231 * 210.00208 * 1 2 3 30 30 H 1.09002 * 109.47265 * 329.99874 * 1 2 3 31 31 H 1.07999 * 128.00083 * 0.03448 * 3 2 1 32 32 H 1.09001 * 109.47558 * 330.00282 * 5 4 3 33 33 H 1.08998 * 109.47216 * 209.99945 * 5 4 3 34 34 H 1.00901 * 110.99869 * 56.04737 * 6 5 4 35 35 H 1.09004 * 109.47031 * 299.99620 * 7 6 5 36 36 H 1.08995 * 109.47111 * 59.99900 * 7 6 5 37 37 H 0.96994 * 120.00657 * 24.99927 * 10 8 7 38 38 H 1.08998 * 109.47409 * 300.01004 * 13 11 10 39 39 H 1.09007 * 109.47101 * 60.00551 * 13 11 10 40 40 H 0.96995 * 120.00432 * 180.02562 * 18 17 15 41 41 H 1.09003 * 115.55465 * 34.41123 * 23 8 7 42 42 H 1.09001 * 117.49513 * 0.02562 * 24 23 8 43 43 H 1.09003 * 117.49643 * 145.02007 * 24 23 8 44 44 H 1.09007 * 117.49849 * 214.97585 * 25 23 8 45 45 H 1.08999 * 117.50237 * 359.97252 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6068 -0.0006 5 6 4.9021 1.3695 -0.0014 6 7 5.3252 1.6175 1.3834 7 6 6.5914 2.3614 1.4218 8 6 6.9990 2.5995 2.8772 9 1 6.2679 3.2498 3.3574 10 7 7.0525 1.3181 3.5852 11 6 6.8877 1.2798 4.9223 12 8 6.6948 2.3059 5.5393 13 6 6.9421 -0.0384 5.6507 14 16 6.6867 0.2394 7.4209 15 6 6.7974 -1.4176 8.0098 16 1 6.9761 -2.2262 7.3165 17 6 6.6559 -1.6835 9.3647 18 7 6.4387 -0.6979 10.2097 19 14 6.7739 -3.4401 9.9891 20 1 7.0216 -4.3559 8.8467 21 1 7.8928 -3.5464 10.9597 22 1 5.5017 -3.8144 10.6573 23 6 8.3769 3.2632 2.9187 24 6 9.5434 2.4358 3.4627 25 6 8.9654 3.5837 4.2942 26 8 3.4537 -0.7254 -0.0063 27 7 2.2868 -1.0424 -0.0006 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 2.0709 2.1742 0.0005 32 1 4.7648 2.3210 -0.5152 33 1 5.6657 0.7858 -0.5155 34 1 5.3971 0.7536 1.8997 35 1 7.3669 1.7848 0.9174 36 1 6.4653 3.3196 0.9179 37 1 7.2065 0.4974 3.0918 38 1 6.1610 -0.6964 5.2701 39 1 7.9162 -0.5012 5.4921 40 1 6.3402 -0.8836 11.1566 41 1 8.5887 3.9583 2.1062 42 1 9.3291 1.4185 3.7905 43 1 10.5226 2.5869 3.0083 44 1 9.5647 4.4895 4.3865 45 1 8.3707 3.3222 5.1694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670442749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:57 Heat of formation + Delta-G solvation = 53.430543 kcal Electronic energy + Delta-G solvation = -26442.992991 eV Core-core repulsion = 22591.152999 eV Total energy + Delta-G solvation = -3851.839992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.14563 -40.04963 -37.44144 -36.45269 -35.01250 -33.85924 -32.42457 -32.28291 -30.05586 -28.95063 -28.25456 -25.77464 -25.44226 -23.31724 -22.75572 -22.13570 -21.04083 -20.34028 -19.85865 -17.93980 -17.85193 -17.52270 -16.65860 -16.37828 -16.14455 -15.82471 -15.01866 -14.91423 -14.79762 -14.49824 -14.04475 -13.84469 -13.65252 -13.41960 -13.39021 -13.25943 -13.11099 -12.74358 -12.57020 -12.24578 -12.07444 -11.93272 -11.77187 -11.34659 -11.22168 -11.06050 -11.00998 -10.74970 -10.30118 -10.23742 -9.95640 -9.79637 -9.71663 -9.37361 -9.06847 -8.93341 -8.81246 -8.22980 -6.48902 -6.21337 -3.91430 1.16691 1.98349 2.76943 3.00966 3.05564 3.22220 3.28579 3.33057 3.66203 3.72245 3.95143 3.99244 4.10824 4.20921 4.52575 4.69997 4.72907 4.90411 4.95700 4.96931 5.08094 5.09390 5.12667 5.14128 5.17098 5.20380 5.26140 5.28629 5.46307 5.50043 5.50963 5.61473 5.77904 5.85267 5.86674 5.92803 6.00521 6.13029 6.21608 6.42010 6.54445 6.65011 6.85080 7.60488 7.66066 8.03348 8.35988 8.60695 9.24447 10.86096 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008126 B = 0.002959 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3444.717332 B = 9459.238457 C =12180.277019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.012 3.988 3 C -0.208 4.208 4 C -0.033 4.033 5 C 0.142 3.858 6 N -0.684 5.684 7 C 0.058 3.942 8 C 0.180 3.820 9 H 0.101 0.899 10 N -0.733 5.733 11 C 0.537 3.463 12 O -0.509 6.509 13 C -0.155 4.155 14 S -0.057 6.057 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.173 4.173 24 C -0.176 4.176 25 C -0.179 4.179 26 O 0.099 5.901 27 N -0.363 5.363 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.172 0.828 32 H 0.107 0.893 33 H 0.056 0.944 34 H 0.351 0.649 35 H 0.042 0.958 36 H 0.090 0.910 37 H 0.394 0.606 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.268 0.732 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.419 6.384 -25.475 26.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.146 4.146 3 C -0.230 4.230 4 C -0.097 4.097 5 C 0.013 3.987 6 N -0.317 5.317 7 C -0.072 4.072 8 C 0.075 3.925 9 H 0.118 0.882 10 N -0.388 5.388 11 C 0.323 3.677 12 O -0.383 6.383 13 C -0.306 4.306 14 S 0.169 5.831 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.744 3.256 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.193 4.193 24 C -0.214 4.214 25 C -0.216 4.216 26 O 0.032 5.968 27 N -0.068 5.068 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.189 0.811 32 H 0.125 0.875 33 H 0.074 0.926 34 H 0.170 0.830 35 H 0.060 0.940 36 H 0.108 0.892 37 H 0.227 0.773 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.124 0.876 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.394 7.390 -24.185 25.516 hybrid contribution 0.961 -2.537 -0.810 2.831 sum -2.433 4.853 -24.995 25.578 Atomic orbital electron populations 1.20171 0.85913 1.04045 1.03232 1.23653 0.99165 0.88865 1.02946 1.22420 0.91037 1.01136 1.08388 1.24299 0.98286 0.83646 1.03446 1.20316 0.88997 0.98035 0.91374 1.60408 1.32266 1.27481 1.11581 1.22233 0.89099 0.99492 0.96343 1.20408 0.95415 0.85867 0.90843 0.88153 1.46059 1.75761 1.09139 1.07800 1.20236 0.74959 0.91103 0.81361 1.90641 1.46227 1.35096 1.66294 1.23549 1.04858 0.96975 1.05220 1.85373 1.94092 1.12150 0.91458 1.22906 1.57003 0.92899 0.95486 0.90943 1.24984 0.94556 0.98314 0.95720 1.70023 1.45752 1.31250 1.03256 0.86129 0.77934 0.82735 0.78783 1.19623 1.20579 1.20559 1.22674 0.94087 1.03683 0.98893 1.22920 0.96403 0.97430 1.04602 1.23377 1.03392 0.98990 0.95800 1.84816 1.21762 1.22794 1.67460 1.73869 0.89258 1.24138 1.19496 0.90263 0.90473 0.89873 0.81054 0.87540 0.92595 0.82973 0.94027 0.89164 0.77255 0.89320 0.89403 0.92251 0.87618 0.88682 0.89531 0.89532 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.47 36.00 0.38 -0.17 16 2 C 0.01 0.13 7.33 -82.10 -0.60 -0.47 16 3 C -0.21 -1.86 11.06 -39.38 -0.44 -2.30 16 4 C -0.03 -0.30 7.00 -35.30 -0.25 -0.55 16 5 C 0.14 0.91 6.25 -4.97 -0.03 0.88 16 6 N -0.68 -5.53 6.48 -115.05 -0.75 -6.28 16 7 C 0.06 0.41 5.28 -3.82 -0.02 0.39 16 8 C 0.18 1.89 2.74 -67.93 -0.19 1.70 16 9 H 0.10 1.34 7.58 -51.93 -0.39 0.95 16 10 N -0.73 -8.75 2.89 -53.81 -0.16 -8.91 16 11 C 0.54 9.30 6.68 -10.98 -0.07 9.23 16 12 O -0.51 -10.68 12.89 5.56 0.07 -10.61 16 13 C -0.16 -3.04 6.16 36.01 0.22 -2.82 16 14 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 15 C -0.53 -15.20 9.50 30.94 0.29 -14.91 16 16 H 0.07 1.96 7.80 -52.48 -0.41 1.56 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 19 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 C -0.17 -1.80 5.71 -90.62 -0.52 -2.31 16 24 C -0.18 -2.01 9.74 -26.69 -0.26 -2.27 16 25 C -0.18 -2.38 9.82 -26.69 -0.26 -2.64 16 26 O 0.10 1.13 11.20 17.17 0.19 1.32 16 27 N -0.36 -4.57 12.07 33.42 0.40 -4.16 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.35 3.17 7.57 -39.29 -0.30 2.87 16 35 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.39 3.71 8.15 -40.82 -0.33 3.38 16 38 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 39 H 0.09 1.60 8.14 -51.91 -0.42 1.17 16 40 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.11 0.88 8.11 -51.93 -0.42 0.45 16 42 H 0.09 1.19 6.67 -51.93 -0.35 0.84 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 45 H 0.12 2.13 5.02 -51.93 -0.26 1.87 16 LS Contribution 390.27 15.07 5.88 5.88 Total: -1.00 -34.90 390.27 -9.36 -44.26 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.67 Total: 5.41 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -1.84 Total: -14.25 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.24 Total: -44.77 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.26 Total: -9.28 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.90 -9.36 -44.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670442749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.693 kcal (2) G-P(sol) polarization free energy of solvation -34.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds