Wall clock time and date at job start Tue Mar 31 2020 22:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.41379 * 126.80590 * 2 1 4 4 C 1.35451 * 103.99089 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.77702 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.47066 * 90.00119 * 5 4 3 7 7 C 1.46901 * 110.99870 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46916 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.46893 * 294.99849 * 8 7 6 10 10 N 1.46498 * 109.46921 * 54.99831 * 8 7 6 11 11 C 1.34779 * 119.99331 * 204.99566 * 10 8 7 12 12 O 1.21273 * 120.00521 * 0.02562 * 11 10 8 13 13 C 1.50701 * 119.99711 * 179.97438 * 11 10 8 14 14 S 1.80994 * 109.47189 * 180.02562 * 13 11 10 15 15 C 1.76205 * 100.00262 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99288 * 0.02562 * 15 14 13 17 17 C 1.38793 * 120.00380 * 179.97438 * 15 14 13 18 18 N 1.31632 * 119.99969 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00320 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46800 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47312 * 120.00176 * 19 17 15 22 22 H 1.48500 * 109.46903 * 240.00597 * 19 17 15 23 23 C 1.52997 * 109.46820 * 175.00024 * 8 7 6 24 24 C 1.53008 * 117.49704 * 248.74429 * 23 8 7 25 25 C 1.52998 * 117.49681 * 180.08675 * 23 8 7 26 26 O 1.34044 * 106.44439 * 0.24015 * 4 3 2 27 27 N 1.20926 * 111.56681 * 359.56695 * 26 4 3 28 28 H 1.08994 * 109.47351 * 90.00385 * 1 2 3 29 29 H 1.09005 * 109.47231 * 210.00208 * 1 2 3 30 30 H 1.09002 * 109.47265 * 329.99874 * 1 2 3 31 31 H 1.07999 * 128.00083 * 0.03448 * 3 2 1 32 32 H 1.09001 * 109.47558 * 330.00282 * 5 4 3 33 33 H 1.08998 * 109.47216 * 209.99945 * 5 4 3 34 34 H 1.00901 * 110.99869 * 56.04737 * 6 5 4 35 35 H 1.09004 * 109.47031 * 299.99620 * 7 6 5 36 36 H 1.08995 * 109.47111 * 59.99900 * 7 6 5 37 37 H 0.96994 * 120.00657 * 24.99927 * 10 8 7 38 38 H 1.08998 * 109.47409 * 300.01004 * 13 11 10 39 39 H 1.09007 * 109.47101 * 60.00551 * 13 11 10 40 40 H 0.96995 * 120.00432 * 180.02562 * 18 17 15 41 41 H 1.09003 * 115.55465 * 34.41123 * 23 8 7 42 42 H 1.09001 * 117.49513 * 0.02562 * 24 23 8 43 43 H 1.09003 * 117.49643 * 145.02007 * 24 23 8 44 44 H 1.09007 * 117.49849 * 214.97585 * 25 23 8 45 45 H 1.08999 * 117.50237 * 359.97252 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6068 -0.0006 5 6 4.9021 1.3695 -0.0014 6 7 5.3252 1.6175 1.3834 7 6 6.5914 2.3614 1.4218 8 6 6.9990 2.5995 2.8772 9 1 6.2679 3.2498 3.3574 10 7 7.0525 1.3181 3.5852 11 6 6.8877 1.2798 4.9223 12 8 6.6948 2.3059 5.5393 13 6 6.9421 -0.0384 5.6507 14 16 6.6867 0.2394 7.4209 15 6 6.7974 -1.4176 8.0098 16 1 6.9761 -2.2262 7.3165 17 6 6.6559 -1.6835 9.3647 18 7 6.4387 -0.6979 10.2097 19 14 6.7739 -3.4401 9.9891 20 1 7.0216 -4.3559 8.8467 21 1 7.8928 -3.5464 10.9597 22 1 5.5017 -3.8144 10.6573 23 6 8.3769 3.2632 2.9187 24 6 9.5434 2.4358 3.4627 25 6 8.9654 3.5837 4.2942 26 8 3.4537 -0.7254 -0.0063 27 7 2.2868 -1.0424 -0.0006 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 2.0709 2.1742 0.0005 32 1 4.7648 2.3210 -0.5152 33 1 5.6657 0.7858 -0.5155 34 1 5.3971 0.7536 1.8997 35 1 7.3669 1.7848 0.9174 36 1 6.4653 3.3196 0.9179 37 1 7.2065 0.4974 3.0918 38 1 6.1610 -0.6964 5.2701 39 1 7.9162 -0.5012 5.4921 40 1 6.3402 -0.8836 11.1566 41 1 8.5887 3.9583 2.1062 42 1 9.3291 1.4185 3.7905 43 1 10.5226 2.5869 3.0083 44 1 9.5647 4.4895 4.3865 45 1 8.3707 3.3222 5.1694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670442749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:56 Heat of formation + Delta-G solvation = 29.228359 kcal Electronic energy + Delta-G solvation = -26444.042477 eV Core-core repulsion = 22591.152999 eV Total energy + Delta-G solvation = -3852.889478 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.89688 -41.21444 -38.49233 -37.20382 -35.71467 -34.90174 -34.59025 -33.13872 -31.24982 -29.59153 -29.37201 -27.66228 -26.41387 -24.04624 -23.48320 -23.06199 -22.23963 -21.08286 -20.83983 -19.84294 -18.63234 -18.36776 -17.87470 -17.40314 -17.20093 -16.89225 -16.70136 -16.04330 -15.67418 -15.59474 -15.55585 -14.74739 -14.59584 -14.53972 -14.20154 -14.17539 -13.94543 -13.87794 -13.46234 -13.19674 -13.16329 -13.01384 -12.92983 -12.79231 -12.70885 -12.55595 -12.23529 -12.00082 -11.70858 -11.26185 -11.16609 -10.93565 -10.88068 -10.76726 -10.44854 -10.26977 -9.98612 -9.44164 -8.65447 -8.35750 -6.12620 0.46583 1.26937 1.27797 1.39610 1.46385 1.57617 1.66408 2.15073 2.24935 2.30898 2.93648 2.98372 3.17397 3.30774 3.33304 3.51409 3.79444 3.98617 4.04551 4.08512 4.14979 4.20830 4.28674 4.35700 4.39096 4.41351 4.49421 4.53900 4.60885 4.67104 4.71769 4.81171 4.87847 4.91979 4.96048 5.01163 5.09096 5.25647 5.29085 5.40976 5.45447 5.59138 5.89721 6.18929 6.20840 6.53098 7.05960 7.31077 7.31850 8.73572 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008126 B = 0.002959 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3444.717332 B = 9459.238457 C =12180.277019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.001 3.999 3 C -0.215 4.215 4 C -0.033 4.033 5 C 0.147 3.853 6 N -0.701 5.701 7 C 0.069 3.931 8 C 0.178 3.822 9 H 0.071 0.929 10 N -0.707 5.707 11 C 0.540 3.460 12 O -0.550 6.550 13 C -0.132 4.132 14 S -0.145 6.145 15 C -0.546 4.546 16 H 0.080 0.920 17 C 0.014 3.986 18 N -0.910 5.910 19 Si 0.997 3.003 20 H -0.258 1.258 21 H -0.273 1.273 22 H -0.274 1.274 23 C -0.148 4.148 24 C -0.169 4.169 25 C -0.212 4.212 26 O 0.080 5.920 27 N -0.403 5.403 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.194 0.806 32 H 0.131 0.869 33 H 0.074 0.926 34 H 0.342 0.658 35 H 0.066 0.934 36 H 0.114 0.886 37 H 0.410 0.590 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.271 0.729 41 H 0.141 0.859 42 H 0.082 0.918 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.699 6.011 -28.529 29.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.157 4.157 3 C -0.237 4.237 4 C -0.097 4.097 5 C 0.018 3.982 6 N -0.334 5.334 7 C -0.059 4.059 8 C 0.073 3.927 9 H 0.089 0.911 10 N -0.361 5.361 11 C 0.326 3.674 12 O -0.428 6.428 13 C -0.284 4.284 14 S 0.083 5.917 15 C -0.694 4.694 16 H 0.098 0.902 17 C -0.191 4.191 18 N -0.547 5.547 19 Si 0.819 3.181 20 H -0.182 1.182 21 H -0.198 1.198 22 H -0.199 1.199 23 C -0.167 4.167 24 C -0.207 4.207 25 C -0.249 4.249 26 O 0.016 5.984 27 N -0.111 5.111 28 H 0.114 0.886 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.212 0.788 32 H 0.149 0.851 33 H 0.092 0.908 34 H 0.161 0.839 35 H 0.084 0.916 36 H 0.132 0.868 37 H 0.247 0.753 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.080 0.920 41 H 0.159 0.841 42 H 0.100 0.900 43 H 0.127 0.873 44 H 0.114 0.886 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.650 7.015 -27.305 28.316 hybrid contribution 0.729 -2.334 0.045 2.445 sum -1.921 4.681 -27.260 27.726 Atomic orbital electron populations 1.20303 0.84196 1.04494 1.04419 1.24264 1.00561 0.89020 1.01883 1.22784 0.90830 1.01867 1.08236 1.24890 0.99648 0.82911 1.02271 1.20493 0.88012 0.99065 0.90629 1.60399 1.33018 1.27249 1.12690 1.22191 0.89313 1.01023 0.93410 1.20563 0.95135 0.84280 0.92694 0.91117 1.45768 1.73581 1.10924 1.05803 1.19844 0.75188 0.89430 0.82974 1.90648 1.48502 1.35990 1.67616 1.23391 1.06155 0.98919 0.99918 1.85518 1.94557 1.13305 0.98365 1.23229 1.56919 0.93089 0.96159 0.90232 1.26096 0.93840 1.03263 0.95900 1.70181 1.46884 1.33938 1.03693 0.84936 0.78138 0.76679 0.78395 1.18195 1.19812 1.19946 1.22775 0.93223 1.03075 0.97672 1.22949 0.97909 0.96040 1.03760 1.23251 1.04976 1.00600 0.96115 1.84759 1.21495 1.24141 1.67983 1.73859 0.89968 1.25623 1.21674 0.88648 0.91170 0.88232 0.78846 0.85115 0.90773 0.83934 0.91602 0.86803 0.75310 0.87925 0.87714 0.92005 0.84139 0.89996 0.87346 0.88627 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.47 71.23 0.75 -0.28 16 2 C 0.00 0.02 7.33 43.57 0.32 0.34 16 3 C -0.22 -3.50 11.06 22.40 0.25 -3.26 16 4 C -0.03 -0.55 7.00 25.04 0.18 -0.37 16 5 C 0.15 1.36 6.25 85.55 0.53 1.90 16 6 N -0.70 -9.22 6.48 -517.92 -3.36 -12.58 16 7 C 0.07 0.69 5.28 86.30 0.46 1.15 16 8 C 0.18 3.37 2.74 44.99 0.12 3.49 16 9 H 0.07 1.85 7.58 -2.39 -0.02 1.83 16 10 N -0.71 -15.94 2.89 -442.54 -1.28 -17.22 16 11 C 0.54 18.94 6.68 87.66 0.59 19.52 16 12 O -0.55 -24.22 12.89 -3.01 -0.04 -24.26 16 13 C -0.13 -5.23 6.16 71.24 0.44 -4.79 16 14 S -0.14 -8.04 20.57 -56.49 -1.16 -9.21 16 15 C -0.55 -31.54 9.50 67.95 0.65 -30.90 16 16 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 17 C 0.01 0.79 5.49 84.86 0.47 1.26 16 18 N -0.91 -56.39 13.22 21.65 0.29 -56.10 16 19 Si 1.00 44.28 29.55 68.60 2.03 46.31 16 20 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 23 C -0.15 -2.67 5.71 -10.79 -0.06 -2.73 16 24 C -0.17 -3.52 9.74 30.62 0.30 -3.22 16 25 C -0.21 -5.63 9.82 30.62 0.30 -5.33 16 26 O 0.08 1.80 11.20 71.59 0.80 2.60 16 27 N -0.40 -10.15 12.07 -49.54 -0.60 -10.75 16 28 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.19 2.08 8.06 -2.91 -0.02 2.05 16 32 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.34 5.40 7.57 -89.69 -0.68 4.72 16 35 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.41 6.75 8.15 -92.71 -0.76 6.00 16 38 H 0.10 3.75 8.14 -2.40 -0.02 3.73 16 39 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 40 H 0.27 15.54 8.31 -92.71 -0.77 14.76 16 41 H 0.14 1.65 8.11 -2.39 -0.02 1.63 16 42 H 0.08 1.91 6.67 -2.39 -0.02 1.90 16 43 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 45 H 0.08 2.92 5.02 -2.39 -0.01 2.91 16 Total: -1.00 -81.60 390.27 1.54 -80.06 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: -0.41 Total: 24.38 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: 5.28 Total: -23.22 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -4.95 Total: -96.66 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.76 Total: -21.66 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: -8.04 SS G_CDS: -1.16 Total: -9.21 kcal Total: -81.60 1.54 -80.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670442749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.286 kcal (2) G-P(sol) polarization free energy of solvation -81.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds