Wall clock time and date at job start Tue Mar 31 2020 22:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41385 * 126.80003 * 2 1 4 4 C 1.35451 * 103.98674 * 180.02562 * 3 2 1 5 5 C 1.50691 * 126.77809 * 179.97438 * 4 3 2 6 6 N 1.46904 * 109.47414 * 90.00156 * 5 4 3 7 7 C 1.46896 * 111.00207 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.47189 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.47504 * 64.99265 * 8 7 6 10 10 N 1.46505 * 109.47041 * 304.99655 * 8 7 6 11 11 C 1.34774 * 120.00190 * 155.00108 * 10 8 7 12 12 O 1.21280 * 120.00102 * 359.97438 * 11 10 8 13 13 C 1.50702 * 119.99889 * 180.02562 * 11 10 8 14 14 S 1.80999 * 109.46971 * 180.02562 * 13 11 10 15 15 C 1.76195 * 99.99939 * 180.02562 * 14 13 11 16 16 H 1.08006 * 120.00353 * 359.97438 * 15 14 13 17 17 C 1.38797 * 120.00140 * 180.02562 * 15 14 13 18 18 N 1.31632 * 120.00067 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00302 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47008 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47330 * 119.99601 * 19 17 15 22 22 H 1.48504 * 109.47031 * 239.99654 * 19 17 15 23 23 C 1.53003 * 109.47289 * 184.99830 * 8 7 6 24 24 C 1.53001 * 117.51964 * 116.28130 * 23 8 7 25 25 C 1.52999 * 60.00190 * 107.47982 * 24 23 8 26 26 O 1.34047 * 106.44712 * 0.24224 * 4 3 2 27 27 N 1.20931 * 111.56071 * 359.56440 * 26 4 3 28 28 H 1.08998 * 109.46765 * 90.00004 * 1 2 3 29 29 H 1.08998 * 109.46656 * 209.99913 * 1 2 3 30 30 H 1.08995 * 109.47256 * 330.00162 * 1 2 3 31 31 H 1.07997 * 128.00800 * 0.03490 * 3 2 1 32 32 H 1.09001 * 109.47460 * 330.00158 * 5 4 3 33 33 H 1.09006 * 109.47321 * 210.00157 * 5 4 3 34 34 H 1.00904 * 110.99210 * 303.95110 * 6 5 4 35 35 H 1.09003 * 109.47391 * 59.99669 * 7 6 5 36 36 H 1.09006 * 109.47070 * 299.99704 * 7 6 5 37 37 H 0.97005 * 119.99760 * 334.99871 * 10 8 7 38 38 H 1.08999 * 109.46889 * 299.99569 * 13 11 10 39 39 H 1.09000 * 109.47352 * 59.99948 * 13 11 10 40 40 H 0.96998 * 120.00149 * 179.97438 * 18 17 15 41 41 H 1.09002 * 115.54973 * 330.57913 * 23 8 7 42 42 H 1.09001 * 117.49733 * 214.97413 * 24 23 8 43 43 H 1.08995 * 117.49577 * 359.97438 * 24 23 8 44 44 H 1.09004 * 117.50150 * 252.51496 * 25 24 23 45 45 H 1.09004 * 117.49681 * 107.48417 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6025 0.6069 -0.0006 5 6 4.9021 1.3697 -0.0014 6 7 5.3252 1.6177 1.3834 7 6 6.5914 2.3615 1.4217 8 6 6.9990 2.5997 2.8770 9 1 7.2114 1.6439 3.3560 10 7 5.9064 3.2695 3.5869 11 6 5.7936 3.1426 4.9239 12 8 6.5963 2.4736 5.5394 13 6 4.6693 3.8312 5.6539 14 16 4.7897 3.4718 7.4238 15 6 3.3957 4.3731 8.0145 16 1 2.7750 4.9226 7.3223 17 6 3.0959 4.3778 9.3697 18 7 3.8526 3.7085 10.2136 19 14 1.6184 5.3339 9.9962 20 1 0.9372 5.9960 8.8549 21 1 0.6738 4.4034 10.6647 22 1 2.0701 6.3628 10.9670 23 6 8.2496 3.4802 2.9188 24 6 8.1228 4.8579 3.5721 25 6 8.8853 3.7400 4.2861 26 8 3.4538 -0.7253 -0.0063 27 7 2.2868 -1.0422 -0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 2.0709 2.1743 0.0005 32 1 4.7648 2.3211 -0.5153 33 1 5.6657 0.7860 -0.5156 34 1 4.6061 2.1017 1.8999 35 1 6.4653 3.3198 0.9178 36 1 7.3669 1.7850 0.9173 37 1 5.2641 3.8044 3.0945 38 1 4.7392 4.9075 5.4965 39 1 3.7139 3.4697 5.2736 40 1 3.6433 3.7120 11.1607 41 1 8.9177 3.3889 2.0624 42 1 8.7073 5.6729 3.1454 43 1 7.1481 5.1374 3.9719 44 1 8.4123 3.2839 5.1558 45 1 9.9716 3.8196 4.3291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670442756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:59 Heat of formation + Delta-G solvation = 53.262541 kcal Electronic energy + Delta-G solvation = -26464.135855 eV Core-core repulsion = 22612.288577 eV Total energy + Delta-G solvation = -3851.847278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.13683 -40.04671 -37.45242 -36.48006 -35.00285 -33.87847 -32.44132 -32.29296 -30.06623 -28.94298 -28.26365 -25.80087 -25.46107 -23.31522 -22.70861 -22.13799 -21.06226 -20.38122 -19.91365 -17.96802 -17.82854 -17.57292 -16.55310 -16.36967 -16.09745 -15.74652 -15.03872 -14.91979 -14.81554 -14.51206 -14.27348 -14.02387 -13.65186 -13.48817 -13.35114 -13.23115 -13.05996 -12.74553 -12.35702 -12.27170 -12.13238 -11.94792 -11.74842 -11.36258 -11.25110 -11.07942 -11.02801 -10.76935 -10.30161 -10.25235 -9.96956 -9.81381 -9.74651 -9.37425 -9.08550 -8.94172 -8.82201 -8.24229 -6.50440 -6.22874 -3.93081 1.16054 1.95589 2.78897 2.99286 3.05126 3.20474 3.26803 3.30855 3.63614 3.69895 3.93816 3.98512 4.14875 4.19120 4.50190 4.68846 4.74291 4.84654 4.91295 4.95514 5.07617 5.09842 5.12123 5.12522 5.16163 5.17170 5.23438 5.26183 5.46380 5.46821 5.51725 5.60401 5.77954 5.83131 5.84482 5.91659 6.00764 6.10195 6.22221 6.41899 6.53787 6.64109 6.85593 7.58453 7.65109 8.04814 8.33990 8.60280 9.22716 10.84538 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007951 B = 0.003037 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3520.887355 B = 9217.426518 C =12120.328632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.014 3.986 3 C -0.228 4.228 4 C -0.022 4.022 5 C 0.138 3.862 6 N -0.683 5.683 7 C 0.058 3.942 8 C 0.180 3.820 9 H 0.101 0.899 10 N -0.733 5.733 11 C 0.536 3.464 12 O -0.508 6.508 13 C -0.155 4.155 14 S -0.057 6.057 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.174 4.174 24 C -0.175 4.175 25 C -0.178 4.178 26 O 0.110 5.890 27 N -0.364 5.364 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.170 0.830 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.349 0.651 35 H 0.041 0.959 36 H 0.091 0.909 37 H 0.393 0.607 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.268 0.732 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.123 0.877 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 -0.226 -25.459 25.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.144 4.144 3 C -0.250 4.250 4 C -0.086 4.086 5 C 0.009 3.991 6 N -0.317 5.317 7 C -0.071 4.071 8 C 0.074 3.926 9 H 0.119 0.881 10 N -0.387 5.387 11 C 0.322 3.678 12 O -0.382 6.382 13 C -0.306 4.306 14 S 0.170 5.830 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.744 3.256 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.194 4.194 24 C -0.212 4.212 25 C -0.215 4.215 26 O 0.042 5.958 27 N -0.068 5.068 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.188 0.812 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.169 0.831 35 H 0.059 0.941 36 H 0.109 0.891 37 H 0.226 0.774 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.124 0.876 42 H 0.105 0.895 43 H 0.113 0.887 44 H 0.141 0.859 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.974 -3.355 -24.169 24.581 hybrid contribution -2.579 3.472 -0.800 4.399 sum 0.395 0.118 -24.969 24.972 Atomic orbital electron populations 1.20175 0.85905 1.04074 1.03244 1.23608 0.99140 0.88766 1.02906 1.22458 0.91294 1.01201 1.10031 1.24269 0.97663 0.84077 1.02585 1.20311 0.90365 0.97078 0.91378 1.60346 1.06350 1.53439 1.11569 1.22238 0.92102 0.96433 0.96327 1.20425 0.84974 0.96338 0.90840 0.88109 1.46057 1.31026 1.53876 1.07783 1.20235 0.85812 0.80339 0.81371 1.90644 1.42318 1.38851 1.66354 1.23542 0.98952 1.02804 1.05253 1.85405 1.39028 1.67161 0.91415 1.22901 1.14097 1.35914 0.95485 0.90967 1.24985 0.97291 0.95557 0.95726 1.70023 1.37467 1.39414 1.03303 0.86132 0.81308 0.79363 0.78780 1.19656 1.20553 1.20565 1.22684 0.99729 0.99157 0.97830 1.22907 1.02653 0.91211 1.04463 1.23338 0.99190 1.02308 0.96626 1.84846 1.21455 1.22608 1.66856 1.73874 0.89363 1.24178 1.19371 0.90258 0.90438 0.89882 0.81236 0.91522 0.88295 0.83102 0.94108 0.89082 0.77365 0.89454 0.89379 0.92228 0.87632 0.89538 0.88651 0.85917 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.47 36.01 0.38 -0.18 16 2 C 0.01 0.15 7.33 -82.10 -0.60 -0.45 16 3 C -0.23 -1.96 11.06 -39.38 -0.44 -2.39 16 4 C -0.02 -0.20 7.00 -35.31 -0.25 -0.44 16 5 C 0.14 0.88 6.25 -4.98 -0.03 0.85 16 6 N -0.68 -5.54 6.48 -115.06 -0.75 -6.29 16 7 C 0.06 0.41 5.26 -3.83 -0.02 0.39 16 8 C 0.18 1.89 2.72 -67.93 -0.18 1.70 16 9 H 0.10 1.37 7.58 -51.93 -0.39 0.97 16 10 N -0.73 -8.55 3.02 -53.80 -0.16 -8.71 16 11 C 0.54 9.18 6.53 -10.99 -0.07 9.11 16 12 O -0.51 -10.64 12.85 5.56 0.07 -10.57 16 13 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 14 S -0.06 -1.50 20.57 -107.50 -2.21 -3.72 16 15 C -0.54 -15.07 9.50 30.94 0.29 -14.77 16 16 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 17 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -25.98 13.22 55.49 0.73 -25.25 16 19 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 C -0.17 -1.80 5.73 -90.61 -0.52 -2.32 16 24 C -0.18 -2.01 9.68 -26.73 -0.26 -2.27 16 25 C -0.18 -2.35 9.85 -26.73 -0.26 -2.61 16 26 O 0.11 1.30 11.20 17.16 0.19 1.49 16 27 N -0.36 -4.62 12.07 33.43 0.40 -4.22 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.35 2.94 7.57 -39.29 -0.30 2.65 16 35 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.39 3.49 8.15 -40.82 -0.33 3.16 16 38 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 39 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.11 0.87 8.08 -51.93 -0.42 0.45 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.10 1.22 6.41 -51.93 -0.33 0.88 16 44 H 0.12 2.10 5.26 -51.93 -0.27 1.83 16 45 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 390.08 15.07 5.88 5.88 Total: -1.00 -34.96 390.08 -9.37 -44.33 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.67 Total: 4.98 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -1.84 Total: -14.16 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.23 Total: -44.46 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.26 Total: -9.08 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.96 -9.37 -44.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670442756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.592 kcal (2) G-P(sol) polarization free energy of solvation -34.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds