Wall clock time and date at job start Tue Mar 31 2020 22:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35450 * 126.77559 * 2 1 4 4 C 1.41372 * 103.98729 * 179.97438 * 3 2 1 5 5 C 1.50707 * 126.80304 * 180.02562 * 4 3 2 6 6 N 1.46892 * 109.47167 * 95.02727 * 5 4 3 7 7 C 1.46901 * 111.00148 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47277 * 174.93309 * 7 6 5 9 9 H 1.08996 * 109.87428 * 54.55100 * 8 7 6 10 10 C 1.54330 * 109.88332 * 293.53426 * 8 7 6 11 11 C 1.55397 * 102.82890 * 218.48446 * 10 8 7 12 12 C 1.54908 * 101.66815 * 35.33460 * 11 10 8 13 13 N 1.47021 * 109.88518 * 175.56918 * 8 7 6 14 14 C 1.34783 * 125.64388 * 298.39673 * 13 8 7 15 15 O 1.21279 * 120.00344 * 4.92431 * 14 13 8 16 16 C 1.50699 * 119.99507 * 184.92912 * 14 13 8 17 17 S 1.80999 * 109.46720 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99883 * 180.02562 * 17 16 14 19 19 H 1.07993 * 120.00000 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99914 * 180.02562 * 18 17 16 21 21 N 1.31629 * 120.00278 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00141 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46878 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47159 * 119.99578 * 22 20 18 25 25 H 1.48505 * 109.47056 * 240.00005 * 22 20 18 26 26 N 1.30172 * 106.39579 * 0.02562 * 4 3 2 27 27 O 1.20917 * 111.60416 * 359.97438 * 26 4 3 28 28 H 1.09000 * 109.47519 * 90.00396 * 1 2 3 29 29 H 1.09009 * 109.46798 * 209.99790 * 1 2 3 30 30 H 1.08998 * 109.47279 * 329.99296 * 1 2 3 31 31 H 1.08005 * 128.00599 * 0.02562 * 3 2 1 32 32 H 1.09004 * 109.46776 * 215.02789 * 5 4 3 33 33 H 1.08997 * 109.46791 * 335.02423 * 5 4 3 34 34 H 1.00897 * 111.00484 * 56.04587 * 6 5 4 35 35 H 1.08994 * 109.46798 * 294.93541 * 7 6 5 36 36 H 1.09004 * 109.46808 * 54.93537 * 7 6 5 37 37 H 1.09005 * 110.71738 * 336.75353 * 10 8 7 38 38 H 1.09001 * 110.71886 * 100.02584 * 10 8 7 39 39 H 1.09004 * 110.88926 * 277.26480 * 11 10 8 40 40 H 1.08996 * 111.07088 * 153.48879 * 11 10 8 41 41 H 1.08997 * 110.36519 * 204.23416 * 12 11 10 42 42 H 1.09006 * 110.45646 * 81.96525 * 12 11 10 43 43 H 1.08999 * 109.47131 * 299.99131 * 16 14 13 44 44 H 1.09004 * 109.47344 * 59.99719 * 16 14 13 45 45 H 0.97003 * 120.00445 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5374 0.0006 5 6 4.9211 1.3002 0.0014 6 7 5.4041 1.4432 1.3813 7 6 6.6719 2.1840 1.4212 8 6 7.0778 2.4223 2.8769 9 1 7.1089 1.4737 3.4129 10 6 6.0697 3.3748 3.5538 11 6 6.9794 4.2593 4.4509 12 6 8.2530 4.3851 3.5780 13 7 8.3970 3.0694 2.9288 14 6 9.5473 2.5466 2.4596 15 8 9.5344 1.4916 1.8616 16 6 10.8494 3.2730 2.6782 17 16 12.2012 2.3243 1.9376 18 6 13.5619 3.3723 2.3311 19 1 13.3969 4.2895 2.8767 20 6 14.8457 3.0195 1.9388 21 7 15.0468 1.9018 1.2732 22 14 16.2883 4.1309 2.3553 23 1 15.7993 5.3175 3.1023 24 1 17.2621 3.3852 3.1924 25 1 16.9500 4.5737 1.1017 26 7 3.4764 -0.7563 0.0003 27 8 2.3096 -1.0735 0.0002 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 2.0344 2.1271 0.0004 32 1 5.6607 0.7583 -0.5882 33 1 4.7631 2.2875 -0.4324 34 1 5.4969 0.5428 1.8271 35 1 7.4466 1.6056 0.9180 36 1 6.5487 3.1425 0.9168 37 1 5.5542 3.9825 2.8100 38 1 5.3557 2.8148 4.1577 39 1 7.1999 3.7590 5.3939 40 1 6.5274 5.2356 4.6254 41 1 9.1211 4.5972 4.2021 42 1 8.1255 5.1661 2.8284 43 1 10.7987 4.2576 2.2132 44 1 11.0279 3.3851 3.7477 45 1 15.9440 1.6550 0.9994 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671270932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:11 Heat of formation + Delta-G solvation = 26.364445 kcal Electronic energy + Delta-G solvation = -26105.149318 eV Core-core repulsion = 22252.135652 eV Total energy + Delta-G solvation = -3853.013666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.18260 -40.01904 -37.43538 -36.49080 -34.23057 -33.46936 -32.43705 -31.73473 -30.37212 -28.62140 -28.15344 -26.64001 -25.50270 -24.14657 -23.26803 -22.48960 -21.10664 -20.35541 -18.96693 -17.90481 -17.71074 -17.49446 -16.83562 -16.38122 -15.62415 -15.26083 -14.88404 -14.81235 -14.63957 -14.42658 -14.11399 -14.02265 -13.78768 -13.67552 -13.33703 -13.17023 -12.87340 -12.66509 -12.59010 -12.52826 -12.28349 -12.01147 -11.62571 -11.43105 -11.31889 -11.07811 -11.02144 -10.92890 -10.84391 -10.75808 -10.47168 -9.80983 -9.62221 -9.41430 -9.08094 -8.70030 -8.47105 -8.23348 -6.50900 -6.22373 -3.93020 1.18896 1.92018 2.81900 2.88355 3.04147 3.20989 3.25179 3.30485 3.57343 3.83862 4.11274 4.19407 4.26279 4.45093 4.48747 4.68007 4.75899 4.83130 4.92349 4.94335 5.01790 5.12356 5.12922 5.18405 5.24252 5.25578 5.31685 5.40758 5.49134 5.55029 5.60733 5.64468 5.68518 5.76491 5.80716 5.85313 5.88144 5.97069 6.13325 6.14835 6.43936 6.69486 7.06135 7.59190 7.68832 8.02088 8.34800 8.55386 9.23006 10.85111 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020581 B = 0.001969 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.153993 B =14219.592833 C =15309.033640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.039 4.039 3 C -0.218 4.218 4 C 0.026 3.974 5 C 0.138 3.862 6 N -0.679 5.679 7 C 0.045 3.955 8 C 0.144 3.856 9 H 0.072 0.928 10 C -0.111 4.111 11 C -0.137 4.137 12 C 0.101 3.899 13 N -0.622 5.622 14 C 0.549 3.451 15 O -0.515 6.515 16 C -0.147 4.147 17 S -0.061 6.061 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 N -0.361 5.361 27 O 0.100 5.900 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.171 0.829 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.345 0.655 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.220 3.940 1.808 30.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.103 4.103 3 C -0.239 4.239 4 C -0.134 4.134 5 C 0.008 3.992 6 N -0.312 5.312 7 C -0.084 4.084 8 C 0.040 3.960 9 H 0.090 0.910 10 C -0.149 4.149 11 C -0.175 4.175 12 C -0.023 4.023 13 N -0.360 5.360 14 C 0.337 3.663 15 O -0.389 6.389 16 C -0.297 4.297 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.206 1.206 26 N -0.065 5.065 27 O 0.032 5.968 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.188 0.812 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.163 0.837 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -29.522 1.746 0.915 29.588 hybrid contribution 1.287 2.105 0.605 2.541 sum -28.235 3.851 1.521 28.537 Atomic orbital electron populations 1.20325 0.84067 1.04647 1.04029 1.24518 0.96401 0.86267 1.03109 1.22375 0.91169 1.00932 1.09472 1.23445 0.97369 0.89771 1.02767 1.20160 0.89384 0.98679 0.90967 1.60422 1.30469 1.24564 1.15699 1.22372 0.89808 0.99047 0.97202 1.21360 0.82470 0.96907 0.95274 0.91041 1.22596 0.96526 0.97187 0.98607 1.22864 0.95361 1.00752 0.98496 1.22295 0.98822 0.85347 0.95791 1.48571 1.06749 1.19379 1.61305 1.20050 0.83521 0.85192 0.77509 1.90690 1.85943 1.22682 1.39582 1.23515 0.96931 1.03941 1.05360 1.85401 0.95205 1.30100 1.72772 1.22899 0.93242 1.09637 1.42491 0.90876 1.24996 0.98371 0.95624 0.94605 1.70028 1.22376 1.21986 1.35886 0.86114 0.81111 0.79991 0.78266 1.19603 1.20548 1.20561 1.73882 0.96936 1.16506 1.19140 1.84827 1.11280 1.33228 1.67430 0.89492 0.89859 0.89045 0.81189 0.92994 0.88688 0.83744 0.92486 0.90740 0.90345 0.90151 0.90686 0.89977 0.90326 0.91440 0.89357 0.89280 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.24 10.45 36.01 0.38 0.14 16 2 C -0.04 -0.30 7.49 -35.30 -0.26 -0.56 16 3 C -0.22 -1.79 11.06 -39.39 -0.44 -2.22 16 4 C 0.03 0.27 6.84 -82.10 -0.56 -0.29 16 5 C 0.14 1.43 6.27 -4.98 -0.03 1.40 16 6 N -0.68 -7.38 6.24 -115.06 -0.72 -8.10 16 7 C 0.05 0.57 5.07 -3.83 -0.02 0.55 16 8 C 0.14 1.78 3.12 -66.95 -0.21 1.57 16 9 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 10 C -0.11 -0.99 6.29 -24.76 -0.16 -1.15 16 11 C -0.14 -1.13 7.09 -24.45 -0.17 -1.30 16 12 C 0.10 1.09 6.74 -2.53 -0.02 1.07 16 13 N -0.62 -9.03 3.07 -163.02 -0.50 -9.53 16 14 C 0.55 10.63 7.68 -10.98 -0.08 10.54 16 15 O -0.51 -11.85 14.66 5.56 0.08 -11.77 16 16 C -0.15 -3.04 5.09 36.01 0.18 -2.86 16 17 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 18 C -0.53 -15.33 9.50 30.94 0.29 -15.03 16 19 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.34 13.22 55.49 0.73 -25.60 16 22 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 N -0.36 -4.49 12.07 33.42 0.40 -4.09 16 27 O 0.10 1.06 11.20 17.19 0.19 1.25 16 28 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.08 0.21 8.14 -51.92 -0.42 -0.21 16 30 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.17 0.98 8.06 -52.48 -0.42 0.56 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.34 4.03 8.78 -39.29 -0.34 3.69 16 35 H 0.06 0.92 6.57 -51.93 -0.34 0.58 16 36 H 0.07 0.88 8.03 -51.93 -0.42 0.46 16 37 H 0.08 0.67 7.78 -51.93 -0.40 0.26 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.84 7.47 -51.93 -0.39 0.45 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.09 1.72 7.95 -51.91 -0.41 1.31 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 390.40 15.07 5.88 5.88 Total: -1.00 -35.48 390.40 -9.28 -44.76 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.93 Total: 0.74 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -1.19 Total: -6.14 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.08 Total: -47.31 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.27 Total: -10.51 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.48 -9.28 -44.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671270932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.128 kcal (2) G-P(sol) polarization free energy of solvation -35.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds