Wall clock time and date at job start Tue Mar 31 2020 22:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35450 * 126.77559 * 2 1 4 4 C 1.41372 * 103.98729 * 179.97438 * 3 2 1 5 5 C 1.50707 * 126.80304 * 180.02562 * 4 3 2 6 6 N 1.46892 * 109.47167 * 95.02727 * 5 4 3 7 7 C 1.46901 * 111.00148 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47277 * 174.93309 * 7 6 5 9 9 H 1.08996 * 109.87428 * 54.55100 * 8 7 6 10 10 C 1.54330 * 109.88332 * 293.53426 * 8 7 6 11 11 C 1.55397 * 102.82890 * 218.48446 * 10 8 7 12 12 C 1.54908 * 101.66815 * 35.33460 * 11 10 8 13 13 N 1.47021 * 109.88518 * 175.56918 * 8 7 6 14 14 C 1.34783 * 125.64388 * 298.39673 * 13 8 7 15 15 O 1.21279 * 120.00344 * 4.92431 * 14 13 8 16 16 C 1.50699 * 119.99507 * 184.92912 * 14 13 8 17 17 S 1.80999 * 109.46720 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99883 * 180.02562 * 17 16 14 19 19 H 1.07993 * 120.00000 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99914 * 180.02562 * 18 17 16 21 21 N 1.31629 * 120.00278 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00141 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46878 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47159 * 119.99578 * 22 20 18 25 25 H 1.48505 * 109.47056 * 240.00005 * 22 20 18 26 26 N 1.30172 * 106.39579 * 0.02562 * 4 3 2 27 27 O 1.20917 * 111.60416 * 359.97438 * 26 4 3 28 28 H 1.09000 * 109.47519 * 90.00396 * 1 2 3 29 29 H 1.09009 * 109.46798 * 209.99790 * 1 2 3 30 30 H 1.08998 * 109.47279 * 329.99296 * 1 2 3 31 31 H 1.08005 * 128.00599 * 0.02562 * 3 2 1 32 32 H 1.09004 * 109.46776 * 215.02789 * 5 4 3 33 33 H 1.08997 * 109.46791 * 335.02423 * 5 4 3 34 34 H 1.00897 * 111.00484 * 56.04587 * 6 5 4 35 35 H 1.08994 * 109.46798 * 294.93541 * 7 6 5 36 36 H 1.09004 * 109.46808 * 54.93537 * 7 6 5 37 37 H 1.09005 * 110.71738 * 336.75353 * 10 8 7 38 38 H 1.09001 * 110.71886 * 100.02584 * 10 8 7 39 39 H 1.09004 * 110.88926 * 277.26480 * 11 10 8 40 40 H 1.08996 * 111.07088 * 153.48879 * 11 10 8 41 41 H 1.08997 * 110.36519 * 204.23416 * 12 11 10 42 42 H 1.09006 * 110.45646 * 81.96525 * 12 11 10 43 43 H 1.08999 * 109.47131 * 299.99131 * 16 14 13 44 44 H 1.09004 * 109.47344 * 59.99719 * 16 14 13 45 45 H 0.97003 * 120.00445 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5374 0.0006 5 6 4.9211 1.3002 0.0014 6 7 5.4041 1.4432 1.3813 7 6 6.6719 2.1840 1.4212 8 6 7.0778 2.4223 2.8769 9 1 7.1089 1.4737 3.4129 10 6 6.0697 3.3748 3.5538 11 6 6.9794 4.2593 4.4509 12 6 8.2530 4.3851 3.5780 13 7 8.3970 3.0694 2.9288 14 6 9.5473 2.5466 2.4596 15 8 9.5344 1.4916 1.8616 16 6 10.8494 3.2730 2.6782 17 16 12.2012 2.3243 1.9376 18 6 13.5619 3.3723 2.3311 19 1 13.3969 4.2895 2.8767 20 6 14.8457 3.0195 1.9388 21 7 15.0468 1.9018 1.2732 22 14 16.2883 4.1309 2.3553 23 1 15.7993 5.3175 3.1023 24 1 17.2621 3.3852 3.1924 25 1 16.9500 4.5737 1.1017 26 7 3.4764 -0.7563 0.0003 27 8 2.3096 -1.0735 0.0002 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 2.0344 2.1271 0.0004 32 1 5.6607 0.7583 -0.5882 33 1 4.7631 2.2875 -0.4324 34 1 5.4969 0.5428 1.8271 35 1 7.4466 1.6056 0.9180 36 1 6.5487 3.1425 0.9168 37 1 5.5542 3.9825 2.8100 38 1 5.3557 2.8148 4.1577 39 1 7.1999 3.7590 5.3939 40 1 6.5274 5.2356 4.6254 41 1 9.1211 4.5972 4.2021 42 1 8.1255 5.1661 2.8284 43 1 10.7987 4.2576 2.2132 44 1 11.0279 3.3851 3.7477 45 1 15.9440 1.6550 0.9994 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671270932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:10 Heat of formation + Delta-G solvation = 1.589889 kcal Electronic energy + Delta-G solvation = -26106.223624 eV Core-core repulsion = 22252.135652 eV Total energy + Delta-G solvation = -3854.087972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.93717 -41.24977 -38.71274 -37.43046 -34.95008 -34.61482 -34.14175 -32.93489 -31.34134 -30.05601 -28.63276 -27.70065 -27.48039 -25.12750 -24.01000 -23.54500 -22.00421 -21.11896 -20.34749 -19.49485 -18.68490 -18.32035 -18.12843 -17.46962 -16.91190 -16.70777 -16.41791 -16.06326 -15.94291 -15.58135 -15.23371 -14.90796 -14.68848 -14.57848 -14.14767 -14.00627 -13.92189 -13.80928 -13.54474 -13.39042 -13.33057 -13.16435 -13.08160 -12.93573 -12.70722 -12.61001 -12.13706 -12.07320 -11.79872 -11.72330 -11.57415 -11.25794 -11.18359 -10.95236 -10.30735 -10.24506 -9.79433 -9.60208 -8.71208 -8.37349 -6.16390 0.52829 1.17446 1.23758 1.39975 1.43168 1.52634 1.55433 2.03823 2.24725 2.26971 2.96947 2.99074 3.21798 3.34224 3.48730 3.57235 3.66808 3.86612 3.96218 4.12657 4.17549 4.22601 4.24907 4.28677 4.32534 4.41062 4.45427 4.54244 4.62955 4.68294 4.74489 4.77029 4.86623 4.94059 5.02371 5.04239 5.06020 5.17960 5.29523 5.36640 5.39256 5.43805 5.70480 6.04285 6.17341 6.39143 7.03755 7.09560 7.31789 8.72258 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020581 B = 0.001969 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.153993 B =14219.592833 C =15309.033640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.032 4.032 3 C -0.222 4.222 4 C 0.012 3.988 5 C 0.140 3.860 6 N -0.663 5.663 7 C 0.057 3.943 8 C 0.138 3.862 9 H 0.054 0.946 10 C -0.098 4.098 11 C -0.124 4.124 12 C 0.087 3.913 13 N -0.613 5.613 14 C 0.545 3.455 15 O -0.564 6.564 16 C -0.119 4.119 17 S -0.153 6.153 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 1.001 2.999 23 H -0.255 1.255 24 H -0.274 1.274 25 H -0.273 1.273 26 N -0.403 5.403 27 O 0.085 5.915 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.198 0.802 32 H 0.029 0.971 33 H 0.116 0.884 34 H 0.338 0.662 35 H 0.012 0.988 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.619 7.293 3.337 33.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.096 4.096 3 C -0.244 4.244 4 C -0.146 4.146 5 C 0.010 3.990 6 N -0.294 5.294 7 C -0.074 4.074 8 C 0.034 3.966 9 H 0.072 0.928 10 C -0.136 4.136 11 C -0.162 4.162 12 C -0.034 4.034 13 N -0.348 5.348 14 C 0.333 3.667 15 O -0.443 6.443 16 C -0.270 4.270 17 S 0.074 5.926 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.549 5.549 22 Si 0.822 3.178 23 H -0.179 1.179 24 H -0.199 1.199 25 H -0.199 1.199 26 N -0.109 5.109 27 O 0.019 5.981 28 H 0.121 0.879 29 H 0.110 0.890 30 H 0.131 0.869 31 H 0.215 0.785 32 H 0.047 0.953 33 H 0.134 0.866 34 H 0.155 0.845 35 H 0.030 0.970 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.133 0.867 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -31.986 5.136 2.472 32.490 hybrid contribution 1.841 1.060 0.137 2.129 sum -30.145 6.196 2.610 30.886 Atomic orbital electron populations 1.20579 0.80755 1.06123 1.05464 1.25361 0.98062 0.85215 1.00941 1.22700 0.89773 1.02383 1.09512 1.23629 0.98358 0.89685 1.02971 1.20195 0.89021 0.99485 0.90303 1.60487 1.29008 1.23956 1.15935 1.22205 0.89160 0.98900 0.97091 1.21576 0.82320 0.97357 0.95303 0.92757 1.22568 0.95633 0.96540 0.98841 1.22869 0.93520 1.02232 0.97547 1.22702 1.00599 0.83470 0.96642 1.48538 1.06047 1.20712 1.59516 1.19810 0.84483 0.84637 0.77748 1.90678 1.86722 1.24777 1.42098 1.23309 0.94885 1.03300 1.05538 1.85608 0.99055 1.33404 1.74536 1.23226 0.93605 1.09807 1.42640 0.89841 1.26163 1.01725 0.97216 0.94101 1.70196 1.23289 1.24196 1.37199 0.84877 0.76604 0.77994 0.78290 1.17860 1.19901 1.19871 1.73880 0.98153 1.17710 1.21173 1.84775 1.11130 1.34504 1.67663 0.87889 0.89029 0.86874 0.78493 0.95292 0.86575 0.84534 0.96968 0.89557 0.89013 0.88867 0.90606 0.86720 0.90018 0.89678 0.87541 0.87649 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.26 10.45 71.24 0.74 0.48 16 2 C -0.03 -0.44 7.49 25.04 0.19 -0.26 16 3 C -0.22 -3.28 11.06 22.40 0.25 -3.03 16 4 C 0.01 0.25 6.84 43.58 0.30 0.55 16 5 C 0.14 2.96 6.27 85.56 0.54 3.50 16 6 N -0.66 -14.51 6.24 -517.95 -3.23 -17.75 16 7 C 0.06 1.44 5.07 86.30 0.44 1.87 16 8 C 0.14 3.33 3.12 45.34 0.14 3.47 16 9 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 10 C -0.10 -1.43 6.29 31.87 0.20 -1.23 16 11 C -0.12 -1.54 7.09 32.07 0.23 -1.32 16 12 C 0.09 1.63 6.74 86.86 0.59 2.22 16 13 N -0.61 -17.33 3.07 -788.06 -2.42 -19.75 16 14 C 0.54 21.61 7.68 87.66 0.67 22.28 16 15 O -0.56 -27.59 14.66 -3.03 -0.04 -27.63 16 16 C -0.12 -4.96 5.09 71.24 0.36 -4.60 16 17 S -0.15 -8.75 20.57 -56.49 -1.16 -9.91 16 18 C -0.55 -31.60 9.50 67.95 0.65 -30.96 16 19 H 0.08 4.49 7.80 -2.91 -0.02 4.46 16 20 C 0.01 0.72 5.49 84.86 0.47 1.19 16 21 N -0.91 -56.88 13.22 21.65 0.29 -56.59 16 22 Si 1.00 43.99 29.55 68.60 2.03 46.02 16 23 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 N -0.40 -10.43 12.07 -49.57 -0.60 -11.03 16 27 O 0.08 1.82 11.20 71.68 0.80 2.62 16 28 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.09 0.23 8.14 -2.38 -0.02 0.21 16 30 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.20 1.65 8.06 -2.91 -0.02 1.62 16 32 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.34 8.32 8.78 -89.70 -0.79 7.53 16 35 H 0.01 0.42 6.57 -2.39 -0.02 0.40 16 36 H 0.09 1.97 8.03 -2.39 -0.02 1.95 16 37 H 0.09 1.17 7.78 -2.38 -0.02 1.15 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.08 1.51 7.47 -2.39 -0.02 1.49 16 42 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 44 H 0.11 4.01 7.95 -2.39 -0.02 3.99 16 45 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -82.98 390.40 1.63 -81.35 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.21 Total: 18.50 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 5.75 Total: -5.83 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -5.96 Total: -105.12 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: 0.76 Total: -25.01 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.16 Total: -9.91 kcal Total: -82.98 1.63 -81.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671270932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.944 kcal (2) G-P(sol) polarization free energy of solvation -82.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds