Wall clock time and date at job start Tue Mar 31 2020 22:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34043 * 126.77325 * 2 1 4 4 N 1.20927 * 111.56466 * 179.97438 * 3 2 1 5 5 C 1.30177 * 111.60538 * 359.74646 * 4 3 2 6 6 C 1.35454 * 126.78079 * 179.97438 * 2 1 3 7 7 C 1.50706 * 127.99997 * 359.96692 * 6 2 1 8 8 N 1.46892 * 109.47002 * 274.58064 * 7 6 2 9 9 C 1.48559 * 111.00590 * 287.95730 * 8 7 6 10 10 C 1.54375 * 104.59928 * 159.03851 * 9 8 7 11 11 C 1.54261 * 105.15076 * 336.09752 * 10 9 8 12 12 C 1.52997 * 110.32514 * 241.15238 * 11 10 9 13 13 N 1.46495 * 110.32234 * 118.94360 * 11 10 9 14 14 C 1.34778 * 120.00342 * 61.46031 * 13 11 10 15 15 O 1.21282 * 119.99539 * 359.97438 * 14 13 11 16 16 C 1.50702 * 120.00327 * 179.97438 * 14 13 11 17 17 S 1.81001 * 109.46953 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99691 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00216 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99601 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00649 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99687 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47072 * 60.00329 * 22 20 18 24 24 H 1.48499 * 109.47409 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47486 * 300.00513 * 22 20 18 26 26 C 1.48559 * 111.00155 * 43.37676 * 8 7 6 27 27 H 1.08998 * 109.47127 * 275.53663 * 1 2 3 28 28 H 1.09001 * 109.47140 * 35.53525 * 1 2 3 29 29 H 1.09001 * 109.46815 * 155.53298 * 1 2 3 30 30 H 1.08003 * 126.80683 * 180.25634 * 5 4 3 31 31 H 1.09002 * 109.46343 * 154.58497 * 7 6 2 32 32 H 1.08994 * 109.47579 * 34.58799 * 7 6 2 33 33 H 1.09003 * 110.41183 * 40.25738 * 9 8 7 34 34 H 1.09001 * 110.51226 * 277.87041 * 9 8 7 35 35 H 1.09005 * 110.32283 * 95.04594 * 10 9 8 36 36 H 1.08995 * 110.32607 * 217.14851 * 10 9 8 37 37 H 1.09000 * 109.46947 * 58.54424 * 12 11 10 38 38 H 1.08999 * 109.47048 * 178.54031 * 12 11 10 39 39 H 1.08998 * 109.47230 * 298.55076 * 12 11 10 40 40 H 0.97004 * 120.00417 * 241.44989 * 13 11 10 41 41 H 1.09000 * 109.46614 * 299.99338 * 16 14 13 42 42 H 1.08997 * 109.47442 * 59.99649 * 16 14 13 43 43 H 0.96994 * 120.00285 * 180.02562 * 21 20 18 44 44 H 1.09006 * 110.41010 * 319.73854 * 26 8 7 45 45 H 1.09003 * 110.41278 * 82.05692 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0737 0.0000 4 7 3.4764 0.7565 0.0005 5 6 3.6214 -0.5372 0.0063 6 6 2.3180 -1.0849 0.0005 7 6 1.9224 -2.5391 0.0018 8 7 1.6878 -2.9814 1.3828 9 6 2.9667 -3.0948 2.1302 10 6 2.5562 -3.0243 3.6167 11 6 1.2039 -2.2821 3.6268 12 6 1.3144 -0.9871 4.4340 13 7 0.1559 -3.1416 4.1827 14 6 0.2512 -3.5857 5.4516 15 8 1.2048 -3.2740 6.1331 16 6 -0.8272 -4.4694 6.0237 17 16 -0.4142 -4.8952 7.7337 18 6 -1.8017 -5.9015 8.1421 19 1 -2.5733 -6.0810 7.4080 20 6 -1.9025 -6.4644 9.4068 21 7 -0.9619 -6.2461 10.3013 22 14 -3.3732 -7.5319 9.8395 23 1 -3.4248 -8.6987 8.9223 24 1 -3.2437 -8.0090 11.2397 25 1 -4.6199 -6.7372 9.7000 26 6 0.9103 -1.9681 2.1416 27 1 -0.3633 0.0991 1.0229 28 1 -0.3633 0.8363 -0.5973 29 1 -0.3633 -0.9354 -0.4256 30 1 4.5529 -1.0839 0.0119 31 1 2.7226 -3.1336 -0.4392 32 1 1.0105 -2.6681 -0.5810 33 1 3.6287 -2.2661 1.8789 34 1 3.4520 -4.0467 1.9146 35 1 2.4402 -4.0281 4.0254 36 1 3.2982 -2.4669 4.1883 37 1 2.0885 -0.3538 4.0006 38 1 0.3597 -0.4617 4.4104 39 1 1.5739 -1.2232 5.4659 40 1 -0.6067 -3.3911 3.6376 41 1 -1.7802 -3.9409 6.0006 42 1 -0.9026 -5.3809 5.4307 43 1 -1.0322 -6.6398 11.1850 44 1 1.2504 -0.9630 1.8920 45 1 -0.1545 -2.0711 1.9324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671614845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:18 Heat of formation + Delta-G solvation = 38.116886 kcal Electronic energy + Delta-G solvation = -27498.395270 eV Core-core repulsion = 23645.891227 eV Total energy + Delta-G solvation = -3852.504042 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.39064 -40.42821 -38.51304 -35.65149 -33.74534 -33.64100 -32.41603 -31.74494 -29.82463 -28.81120 -28.39997 -27.07835 -25.47840 -25.11846 -23.03253 -22.22237 -21.13559 -20.48753 -19.29423 -18.15688 -17.80773 -17.51869 -16.59985 -16.29134 -15.80573 -15.42384 -15.04616 -14.79889 -14.76629 -14.65514 -14.11531 -13.87344 -13.52894 -13.38476 -13.23583 -13.07623 -12.98285 -12.70422 -12.66487 -12.44129 -12.05976 -11.88994 -11.84838 -11.52407 -11.32662 -11.05035 -11.02947 -10.99978 -10.87327 -10.75124 -10.69404 -9.80629 -9.59952 -9.20759 -9.05137 -8.98361 -8.78237 -8.21958 -6.47956 -6.20352 -3.90520 1.00907 1.80132 2.66093 3.05620 3.14264 3.24189 3.28356 3.32246 3.66029 3.74064 3.89862 4.12829 4.20775 4.22358 4.28179 4.56212 4.64002 4.88124 4.88807 4.98092 4.99890 5.08394 5.12500 5.14691 5.17275 5.24753 5.30721 5.32979 5.41138 5.45116 5.56650 5.63792 5.64954 5.73394 5.79516 5.92195 5.95141 6.16784 6.20264 6.27178 6.46930 6.56952 6.80571 7.60513 7.80305 7.83988 8.36286 8.68883 9.24909 10.86982 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028870 B = 0.002204 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.621121 B =12703.284515 C =12854.000425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.018 4.018 3 O 0.097 5.903 4 N -0.364 5.364 5 C 0.001 3.999 6 C -0.238 4.238 7 C 0.118 3.882 8 N -0.493 5.493 9 C 0.028 3.972 10 C -0.123 4.123 11 C 0.178 3.822 12 C -0.159 4.159 13 N -0.724 5.724 14 C 0.534 3.466 15 O -0.514 6.514 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.020 3.980 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.188 0.812 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.398 0.602 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.269 0.731 44 H 0.068 0.932 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.661 11.145 -25.100 27.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 O 0.032 5.968 4 N -0.067 5.067 5 C -0.178 4.178 6 C -0.244 4.244 7 C -0.010 4.010 8 N -0.215 5.215 9 C -0.100 4.100 10 C -0.162 4.162 11 C 0.091 3.909 12 C -0.218 4.218 13 N -0.379 5.379 14 C 0.320 3.680 15 O -0.389 6.389 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.109 4.109 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.205 0.795 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.232 0.768 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.905 12.139 -23.818 27.377 hybrid contribution -2.125 -1.172 -0.794 2.553 sum 3.780 10.966 -24.612 27.208 Atomic orbital electron populations 1.20542 0.83851 1.04918 1.04558 1.24401 0.96347 0.85850 1.01713 1.84836 1.11439 1.33167 1.67369 1.73911 0.97051 1.16862 1.18914 1.24963 0.99699 0.90266 1.02894 1.21902 0.92461 0.99187 1.10855 1.20769 1.02304 0.86064 0.91894 1.65791 1.14510 1.40402 1.00809 1.23230 0.91423 1.01465 0.93865 1.22686 0.96219 1.02462 0.94801 1.20883 0.88163 0.90441 0.91396 1.22204 1.01467 0.95269 1.02822 1.46118 1.25326 1.52476 1.13958 1.20241 0.87173 0.79777 0.80778 1.90669 1.32769 1.56477 1.58959 1.23536 0.99905 1.01029 1.05925 1.85364 1.32171 1.64122 1.01652 1.22831 1.08615 1.35559 1.01363 0.91022 1.24986 0.97049 0.96295 0.95248 1.70004 1.32600 1.42584 1.05156 0.86236 0.81620 0.80131 0.77581 1.19946 1.20839 1.19952 1.23793 0.99584 0.95452 0.92024 0.88971 0.89583 0.88694 0.79462 0.89194 0.88990 0.93565 0.89735 0.89881 0.90531 0.92572 0.92537 0.89601 0.76777 0.89411 0.89327 0.92156 0.91383 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 9.12 36.01 0.33 0.02 16 2 C -0.02 -0.13 5.92 -35.30 -0.21 -0.34 16 3 O 0.10 0.92 11.20 17.17 0.19 1.11 16 4 N -0.36 -3.81 12.07 30.36 0.37 -3.44 16 5 C 0.00 0.01 11.01 -17.06 -0.19 -0.18 16 6 C -0.24 -1.72 3.99 -104.42 -0.42 -2.14 16 7 C 0.12 0.75 5.96 -4.98 -0.03 0.72 16 8 N -0.49 -4.11 5.65 -231.26 -1.31 -5.42 16 9 C 0.03 0.26 6.32 -2.18 -0.01 0.25 16 10 C -0.12 -1.51 5.48 -25.35 -0.14 -1.65 16 11 C 0.18 2.05 1.01 -130.32 -0.13 1.92 16 12 C -0.16 -1.96 8.17 37.16 0.30 -1.65 16 13 N -0.72 -9.38 5.10 -46.22 -0.24 -9.62 16 14 C 0.53 9.57 7.01 -10.98 -0.08 9.49 16 15 O -0.51 -11.00 13.16 5.56 0.07 -10.93 16 16 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 17 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 18 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 19 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 22 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.02 0.16 4.12 -2.06 -0.01 0.16 16 27 H 0.09 0.33 7.29 -51.93 -0.38 -0.05 16 28 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.25 7.41 -51.93 -0.38 -0.13 16 30 H 0.19 1.17 8.06 -52.48 -0.42 0.74 16 31 H 0.09 0.50 8.06 -51.93 -0.42 0.09 16 32 H 0.09 0.46 7.50 -51.93 -0.39 0.08 16 33 H 0.05 0.41 6.31 -51.93 -0.33 0.08 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.24 7.31 -51.93 -0.38 0.86 16 36 H 0.08 0.99 7.71 -51.93 -0.40 0.59 16 37 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.34 6.32 -51.93 -0.33 1.01 16 40 H 0.40 4.14 8.27 -40.82 -0.34 3.80 16 41 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.07 0.56 3.84 -51.93 -0.20 0.36 16 45 H 0.09 0.61 7.63 -51.93 -0.40 0.21 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -34.70 371.76 -8.41 -43.11 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.44 Total: 1.61 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -0.16 Total: -9.13 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: -0.44 Total: -43.89 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.27 Total: -9.82 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.70 -8.41 -43.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671614845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.228 kcal (2) G-P(sol) polarization free energy of solvation -34.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds