Wall clock time and date at job start Tue Mar 31 2020 22:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34043 * 126.77325 * 2 1 4 4 N 1.20927 * 111.56466 * 179.97438 * 3 2 1 5 5 C 1.30177 * 111.60538 * 359.74646 * 4 3 2 6 6 C 1.35454 * 126.78079 * 179.97438 * 2 1 3 7 7 C 1.50706 * 127.99997 * 359.96692 * 6 2 1 8 8 N 1.46892 * 109.47002 * 274.58064 * 7 6 2 9 9 C 1.48559 * 111.00590 * 287.95730 * 8 7 6 10 10 C 1.54375 * 104.59928 * 159.03851 * 9 8 7 11 11 C 1.54261 * 105.15076 * 336.09752 * 10 9 8 12 12 C 1.52997 * 110.32514 * 241.15238 * 11 10 9 13 13 N 1.46495 * 110.32234 * 118.94360 * 11 10 9 14 14 C 1.34778 * 120.00342 * 61.46031 * 13 11 10 15 15 O 1.21282 * 119.99539 * 359.97438 * 14 13 11 16 16 C 1.50702 * 120.00327 * 179.97438 * 14 13 11 17 17 S 1.81001 * 109.46953 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99691 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00216 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99601 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00649 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99687 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47072 * 60.00329 * 22 20 18 24 24 H 1.48499 * 109.47409 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47486 * 300.00513 * 22 20 18 26 26 C 1.48559 * 111.00155 * 43.37676 * 8 7 6 27 27 H 1.08998 * 109.47127 * 275.53663 * 1 2 3 28 28 H 1.09001 * 109.47140 * 35.53525 * 1 2 3 29 29 H 1.09001 * 109.46815 * 155.53298 * 1 2 3 30 30 H 1.08003 * 126.80683 * 180.25634 * 5 4 3 31 31 H 1.09002 * 109.46343 * 154.58497 * 7 6 2 32 32 H 1.08994 * 109.47579 * 34.58799 * 7 6 2 33 33 H 1.09003 * 110.41183 * 40.25738 * 9 8 7 34 34 H 1.09001 * 110.51226 * 277.87041 * 9 8 7 35 35 H 1.09005 * 110.32283 * 95.04594 * 10 9 8 36 36 H 1.08995 * 110.32607 * 217.14851 * 10 9 8 37 37 H 1.09000 * 109.46947 * 58.54424 * 12 11 10 38 38 H 1.08999 * 109.47048 * 178.54031 * 12 11 10 39 39 H 1.08998 * 109.47230 * 298.55076 * 12 11 10 40 40 H 0.97004 * 120.00417 * 241.44989 * 13 11 10 41 41 H 1.09000 * 109.46614 * 299.99338 * 16 14 13 42 42 H 1.08997 * 109.47442 * 59.99649 * 16 14 13 43 43 H 0.96994 * 120.00285 * 180.02562 * 21 20 18 44 44 H 1.09006 * 110.41010 * 319.73854 * 26 8 7 45 45 H 1.09003 * 110.41278 * 82.05692 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0737 0.0000 4 7 3.4764 0.7565 0.0005 5 6 3.6214 -0.5372 0.0063 6 6 2.3180 -1.0849 0.0005 7 6 1.9224 -2.5391 0.0018 8 7 1.6878 -2.9814 1.3828 9 6 2.9667 -3.0948 2.1302 10 6 2.5562 -3.0243 3.6167 11 6 1.2039 -2.2821 3.6268 12 6 1.3144 -0.9871 4.4340 13 7 0.1559 -3.1416 4.1827 14 6 0.2512 -3.5857 5.4516 15 8 1.2048 -3.2740 6.1331 16 6 -0.8272 -4.4694 6.0237 17 16 -0.4142 -4.8952 7.7337 18 6 -1.8017 -5.9015 8.1421 19 1 -2.5733 -6.0810 7.4080 20 6 -1.9025 -6.4644 9.4068 21 7 -0.9619 -6.2461 10.3013 22 14 -3.3732 -7.5319 9.8395 23 1 -3.4248 -8.6987 8.9223 24 1 -3.2437 -8.0090 11.2397 25 1 -4.6199 -6.7372 9.7000 26 6 0.9103 -1.9681 2.1416 27 1 -0.3633 0.0991 1.0229 28 1 -0.3633 0.8363 -0.5973 29 1 -0.3633 -0.9354 -0.4256 30 1 4.5529 -1.0839 0.0119 31 1 2.7226 -3.1336 -0.4392 32 1 1.0105 -2.6681 -0.5810 33 1 3.6287 -2.2661 1.8789 34 1 3.4520 -4.0467 1.9146 35 1 2.4402 -4.0281 4.0254 36 1 3.2982 -2.4669 4.1883 37 1 2.0885 -0.3538 4.0006 38 1 0.3597 -0.4617 4.4104 39 1 1.5739 -1.2232 5.4659 40 1 -0.6067 -3.3911 3.6376 41 1 -1.7802 -3.9409 6.0006 42 1 -0.9026 -5.3809 5.4307 43 1 -1.0322 -6.6398 11.1850 44 1 1.2504 -0.9630 1.8920 45 1 -0.1545 -2.0711 1.9324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671614845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:17 Heat of formation + Delta-G solvation = 12.299052 kcal Electronic energy + Delta-G solvation = -27499.514815 eV Core-core repulsion = 23645.891227 eV Total energy + Delta-G solvation = -3853.623588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.99528 -41.45225 -39.62710 -36.54031 -34.63288 -34.55464 -34.18251 -32.82869 -30.76675 -29.87468 -29.26203 -27.68609 -27.62599 -25.90918 -23.68753 -22.94319 -22.30365 -21.12517 -20.45114 -19.79220 -18.75249 -18.10579 -17.73973 -17.52172 -16.86197 -16.63688 -16.30589 -16.26305 -15.81779 -15.55300 -15.20772 -14.73001 -14.56515 -14.42786 -14.23885 -13.97774 -13.87526 -13.75999 -13.45800 -13.20829 -13.14729 -13.09969 -13.01155 -12.85018 -12.58916 -12.46183 -12.31083 -12.04841 -11.87625 -11.84240 -11.71737 -11.32800 -11.11210 -10.67580 -10.24490 -10.15023 -10.03912 -9.57443 -8.63557 -8.32842 -6.10208 0.47214 1.22302 1.29300 1.44837 1.48650 1.58643 1.70980 2.19021 2.28047 2.34603 3.01083 3.01537 3.32522 3.36147 3.42268 3.63617 3.69012 3.87121 3.97837 4.03230 4.12508 4.22685 4.32503 4.37552 4.50947 4.54387 4.56844 4.63135 4.64460 4.68500 4.68952 4.73508 4.78992 4.87086 4.92405 5.00031 5.04648 5.18785 5.24028 5.27787 5.43190 5.61888 5.77559 5.94566 6.21250 6.63065 7.08422 7.26881 7.36392 8.75993 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028870 B = 0.002204 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.621121 B =12703.284515 C =12854.000425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.013 4.013 3 O 0.078 5.922 4 N -0.400 5.400 5 C -0.004 4.004 6 C -0.243 4.243 7 C 0.122 3.878 8 N -0.495 5.495 9 C 0.037 3.963 10 C -0.125 4.125 11 C 0.174 3.826 12 C -0.154 4.154 13 N -0.699 5.699 14 C 0.536 3.464 15 O -0.556 6.556 16 C -0.129 4.129 17 S -0.150 6.150 18 C -0.546 4.546 19 H 0.082 0.918 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.997 3.003 23 H -0.262 1.262 24 H -0.280 1.280 25 H -0.261 1.261 26 C 0.031 3.969 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.202 0.798 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.415 0.585 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.271 0.729 44 H 0.074 0.926 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.267 10.720 -27.918 29.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.078 4.078 3 O 0.016 5.984 4 N -0.107 5.107 5 C -0.183 4.183 6 C -0.249 4.249 7 C -0.006 4.006 8 N -0.217 5.217 9 C -0.091 4.091 10 C -0.164 4.164 11 C 0.087 3.913 12 C -0.213 4.213 13 N -0.353 5.353 14 C 0.321 3.679 15 O -0.433 6.433 16 C -0.280 4.280 17 S 0.077 5.923 18 C -0.694 4.694 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.549 5.549 22 Si 0.819 3.181 23 H -0.187 1.187 24 H -0.205 1.205 25 H -0.186 1.186 26 C -0.097 4.097 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.132 0.868 30 H 0.219 0.781 31 H 0.117 0.883 32 H 0.132 0.868 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.253 0.747 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.476 11.732 -26.699 29.370 hybrid contribution -1.328 -0.972 -0.021 1.646 sum 2.149 10.760 -26.720 28.885 Atomic orbital electron populations 1.20773 0.81445 1.06516 1.05427 1.25040 0.97590 0.85168 1.00017 1.84798 1.11489 1.34225 1.67851 1.73912 0.97825 1.18058 1.20880 1.25359 1.01020 0.89990 1.01913 1.22010 0.91877 0.99714 1.11300 1.20883 1.03784 0.85346 0.90608 1.65824 1.13654 1.40556 1.01683 1.23129 0.92228 1.02067 0.91722 1.22622 0.96601 1.00443 0.96774 1.21062 0.87279 0.89477 0.93477 1.22124 1.02454 0.96009 1.00694 1.45860 1.26037 1.51257 1.12175 1.19960 0.86137 0.79653 0.82107 1.90673 1.34164 1.58041 1.60455 1.23375 1.01317 1.02449 1.00877 1.85550 1.33669 1.64824 1.08270 1.23178 1.08684 1.35522 1.01991 0.89963 1.26125 1.00345 0.97706 0.95037 1.70177 1.35018 1.43999 1.05660 0.85019 0.77475 0.78204 0.77399 1.18658 1.20509 1.18590 1.23755 1.01148 0.95726 0.89074 0.88197 0.88432 0.86784 0.78127 0.88267 0.86798 0.92899 0.89244 0.92880 0.92146 0.91507 0.91214 0.93458 0.74738 0.87418 0.87641 0.92057 0.90838 0.86845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 9.12 71.24 0.65 0.32 16 2 C -0.01 -0.15 5.92 25.04 0.15 -0.01 16 3 O 0.08 1.40 11.20 71.60 0.80 2.20 16 4 N -0.40 -8.11 12.07 -59.24 -0.72 -8.82 16 5 C 0.00 -0.06 11.01 85.71 0.94 0.88 16 6 C -0.24 -2.86 3.99 -19.73 -0.08 -2.94 16 7 C 0.12 1.08 5.96 85.56 0.51 1.59 16 8 N -0.50 -6.66 5.65 -885.57 -5.00 -11.66 16 9 C 0.04 0.62 6.32 86.45 0.55 1.17 16 10 C -0.13 -3.08 5.48 31.49 0.17 -2.91 16 11 C 0.17 3.75 1.01 4.58 0.00 3.76 16 12 C -0.15 -3.72 8.17 71.98 0.59 -3.13 16 13 N -0.70 -16.88 5.10 -418.52 -2.13 -19.01 16 14 C 0.54 19.11 7.01 87.66 0.61 19.73 16 15 O -0.56 -24.70 13.16 -3.04 -0.04 -24.74 16 16 C -0.13 -5.02 6.16 71.24 0.44 -4.59 16 17 S -0.15 -8.30 20.57 -56.49 -1.16 -9.46 16 18 C -0.55 -31.09 9.50 67.95 0.65 -30.44 16 19 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 20 C 0.01 0.71 5.49 84.86 0.47 1.18 16 21 N -0.91 -56.17 13.22 21.65 0.29 -55.89 16 22 Si 1.00 43.47 29.55 68.60 2.03 45.50 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 26 C 0.03 0.41 4.12 86.53 0.36 0.77 16 27 H 0.10 0.30 7.29 -2.39 -0.02 0.28 16 28 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.11 0.04 7.41 -2.39 -0.02 0.02 16 30 H 0.20 2.23 8.06 -2.91 -0.02 2.20 16 31 H 0.10 0.75 8.06 -2.39 -0.02 0.73 16 32 H 0.11 0.58 7.50 -2.39 -0.02 0.57 16 33 H 0.05 0.84 6.31 -2.39 -0.02 0.83 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.05 1.62 7.31 -2.38 -0.02 1.61 16 36 H 0.06 1.64 7.71 -2.39 -0.02 1.62 16 37 H 0.07 1.44 8.13 -2.39 -0.02 1.42 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.05 1.53 6.32 -2.39 -0.02 1.52 16 40 H 0.42 7.22 8.27 -92.71 -0.77 6.46 16 41 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 42 H 0.11 3.75 8.14 -2.40 -0.02 3.74 16 43 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 44 H 0.07 0.97 3.84 -2.38 -0.01 0.96 16 45 H 0.11 1.00 7.63 -2.39 -0.02 0.98 16 Total: -1.00 -79.44 371.76 0.32 -79.11 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.25 Total: 17.39 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 6.01 Total: -14.61 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -7.57 Total: -95.38 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: 0.76 Total: -22.54 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -79.44 0.32 -79.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671614845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.414 kcal (2) G-P(sol) polarization free energy of solvation -79.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds