Wall clock time and date at job start Tue Mar 31 2020 22:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.34037 * 126.77657 * 2 1 4 4 N 1.20920 * 111.56736 * 179.97438 * 3 2 1 5 5 C 1.30172 * 111.60386 * 359.74612 * 4 3 2 6 6 C 1.35451 * 126.77534 * 179.97438 * 2 1 3 7 7 C 1.50696 * 128.00785 * 359.96430 * 6 2 1 8 8 N 1.46900 * 109.47238 * 80.00022 * 7 6 2 9 9 C 1.48534 * 111.00336 * 52.60164 * 8 7 6 10 10 C 1.54933 * 103.22918 * 159.72037 * 9 8 7 11 11 C 1.54591 * 102.92615 * 322.58639 * 10 9 8 12 12 C 1.52999 * 110.39407 * 140.91134 * 11 10 9 13 13 N 1.46497 * 110.31159 * 263.04347 * 11 10 9 14 14 C 1.34772 * 119.99605 * 295.71241 * 13 11 10 15 15 O 1.21277 * 120.00532 * 0.02562 * 14 13 11 16 16 C 1.50703 * 119.99805 * 179.97438 * 14 13 11 17 17 S 1.81003 * 109.47108 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99857 * 180.02562 * 17 16 14 19 19 H 1.07994 * 120.00120 * 359.97438 * 18 17 16 20 20 C 1.38800 * 119.99787 * 180.02562 * 18 17 16 21 21 N 1.31626 * 120.00215 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99725 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46839 * 60.00147 * 22 20 18 24 24 H 1.48503 * 109.46947 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47394 * 299.99824 * 22 20 18 26 26 C 1.47906 * 111.00463 * 169.99874 * 8 7 6 27 27 H 1.08996 * 109.46630 * 270.00160 * 1 2 3 28 28 H 1.08992 * 109.47116 * 30.00344 * 1 2 3 29 29 H 1.09000 * 109.47018 * 150.00396 * 1 2 3 30 30 H 1.08004 * 126.80477 * 180.25125 * 5 4 3 31 31 H 1.08996 * 109.47462 * 320.00216 * 7 6 2 32 32 H 1.09001 * 109.47050 * 199.99811 * 7 6 2 33 33 H 1.09004 * 110.66939 * 278.16097 * 9 8 7 34 34 H 1.09002 * 110.66619 * 41.28493 * 9 8 7 35 35 H 1.09008 * 110.72472 * 204.22643 * 10 9 8 36 36 H 1.09006 * 110.87315 * 81.02185 * 10 9 8 37 37 H 1.09003 * 109.47309 * 304.24448 * 12 11 10 38 38 H 1.09008 * 109.46710 * 64.23734 * 12 11 10 39 39 H 1.08996 * 109.47239 * 184.23646 * 12 11 10 40 40 H 0.96997 * 120.00267 * 115.71330 * 13 11 10 41 41 H 1.08999 * 109.47204 * 300.00493 * 16 14 13 42 42 H 1.09003 * 109.46836 * 60.00182 * 16 14 13 43 43 H 0.96998 * 120.00381 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.91125 * 333.50977 * 26 8 7 45 45 H 1.08999 * 109.91852 * 94.80110 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3096 1.0736 0.0000 4 7 3.4764 0.7564 0.0005 5 6 3.6214 -0.5372 0.0063 6 6 2.3180 -1.0850 0.0005 7 6 1.9225 -2.5391 0.0019 8 7 1.5612 -2.9496 -1.3615 9 6 2.6382 -2.6045 -2.3244 10 6 2.3510 -3.5380 -3.5272 11 6 1.8801 -4.8438 -2.8468 12 6 0.7294 -5.4713 -3.6361 13 7 2.9938 -5.7890 -2.7347 14 6 3.5670 -6.2898 -3.8469 15 8 3.1612 -5.9577 -4.9405 16 6 4.7130 -7.2617 -3.7316 17 16 5.2602 -7.7483 -5.3869 18 6 6.5663 -8.8531 -4.9649 19 1 6.8020 -9.0395 -3.9276 20 6 7.2930 -9.4831 -5.9657 21 7 7.0061 -9.2556 -7.2300 22 14 8.6781 -10.6538 -5.5183 23 1 8.1367 -11.7746 -4.7083 24 1 9.2918 -11.1917 -6.7590 25 1 9.7066 -9.9264 -4.7320 26 6 1.3984 -4.4171 -1.4477 27 1 -0.3632 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 4.5528 -1.0839 0.0118 31 1 1.0678 -2.6825 0.6629 32 1 2.7591 -3.1428 0.3534 33 1 2.5666 -1.5587 -2.6233 34 1 3.6184 -2.8174 -1.8978 35 1 3.2579 -3.7104 -4.1069 36 1 1.5636 -3.1264 -4.1588 37 1 -0.0762 -4.7450 -3.7434 38 1 1.0851 -5.7679 -4.6229 39 1 0.3598 -6.3481 -3.1044 40 1 3.3186 -6.0543 -1.8601 41 1 5.5386 -6.7885 -3.2000 42 1 4.3864 -8.1451 -3.1830 43 1 7.5136 -9.6961 -7.9294 44 1 2.0033 -4.9033 -0.6824 45 1 0.3490 -4.6825 -1.3195 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671614846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:19 Heat of formation + Delta-G solvation = 9.275396 kcal Electronic energy + Delta-G solvation = -26930.703059 eV Core-core repulsion = 23076.948356 eV Total energy + Delta-G solvation = -3853.754703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.91524 -41.46957 -39.50032 -36.53308 -34.71975 -34.58455 -34.04760 -32.79603 -30.94138 -29.94592 -29.07445 -27.66316 -27.64212 -25.77633 -23.62432 -23.10098 -22.13748 -21.22074 -20.45350 -19.81312 -18.63088 -18.18172 -17.80177 -17.35270 -16.88583 -16.78812 -16.31469 -16.18890 -15.64280 -15.59710 -15.18489 -14.70514 -14.48952 -14.38185 -14.36427 -13.97063 -13.88300 -13.79440 -13.46344 -13.22812 -13.17076 -13.08339 -12.87815 -12.69459 -12.61202 -12.55084 -12.40544 -12.05152 -11.97122 -11.81754 -11.74032 -11.31067 -11.13703 -10.68795 -10.27653 -10.16522 -10.03311 -9.44315 -8.66255 -8.35263 -6.12822 0.53580 1.22980 1.27095 1.42586 1.46295 1.55943 1.66300 2.22354 2.25526 2.29852 2.98697 3.06042 3.32237 3.33211 3.44315 3.66986 3.74518 3.85971 3.98322 3.99048 4.15185 4.26909 4.29546 4.34537 4.49279 4.52175 4.54751 4.65740 4.71206 4.78730 4.80414 4.83865 4.87009 4.91048 4.98996 5.06108 5.08186 5.16671 5.32630 5.39413 5.40582 5.53352 5.81852 5.96644 6.18625 6.56027 7.05997 7.30406 7.30911 8.73515 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020309 B = 0.002166 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.401188 B =12922.210572 C =13648.402057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.007 4.007 3 O 0.077 5.923 4 N -0.402 5.402 5 C -0.007 4.007 6 C -0.212 4.212 7 C 0.127 3.873 8 N -0.505 5.505 9 C 0.051 3.949 10 C -0.125 4.125 11 C 0.167 3.833 12 C -0.154 4.154 13 N -0.707 5.707 14 C 0.537 3.463 15 O -0.550 6.550 16 C -0.131 4.131 17 S -0.148 6.148 18 C -0.547 4.547 19 H 0.081 0.919 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.997 3.003 23 H -0.261 1.261 24 H -0.279 1.279 25 H -0.263 1.263 26 C 0.046 3.954 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.198 0.802 31 H 0.114 0.886 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.043 0.957 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.066 0.934 40 H 0.412 0.588 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.271 0.729 44 H 0.074 0.926 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.966 14.724 21.570 30.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.072 4.072 3 O 0.015 5.985 4 N -0.109 5.109 5 C -0.186 4.186 6 C -0.216 4.216 7 C -0.001 4.001 8 N -0.229 5.229 9 C -0.076 4.076 10 C -0.164 4.164 11 C 0.080 3.920 12 C -0.212 4.212 13 N -0.363 5.363 14 C 0.322 3.678 15 O -0.428 6.428 16 C -0.282 4.282 17 S 0.079 5.921 18 C -0.695 4.695 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.818 3.182 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.082 4.082 27 H 0.124 0.876 28 H 0.108 0.892 29 H 0.126 0.874 30 H 0.215 0.785 31 H 0.132 0.868 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.250 0.750 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.270 16.572 19.485 30.315 hybrid contribution 2.425 -2.214 1.311 3.536 sum -13.845 14.359 20.795 28.815 Atomic orbital electron populations 1.20571 0.81275 1.05889 1.05348 1.25025 0.97634 0.84959 0.99539 1.84772 1.11474 1.34257 1.68002 1.73894 0.97944 1.17898 1.21120 1.25295 1.00951 0.90154 1.02182 1.21060 0.91429 0.97843 1.11287 1.20593 1.01522 0.87448 0.90523 1.64984 1.40240 1.12346 1.05358 1.23016 0.93239 0.99063 0.92320 1.22796 1.01337 0.94824 0.97472 1.21182 0.86045 0.88127 0.96596 1.22139 0.97080 1.01475 1.00548 1.46021 1.35335 1.46510 1.08390 1.19927 0.82742 0.80539 0.84567 1.90672 1.63537 1.60187 1.28359 1.23394 0.99721 1.01654 1.03447 1.85548 1.42908 1.57763 1.05879 1.23169 1.19743 1.30619 0.95984 0.90039 1.26117 1.00341 0.98501 0.94209 1.70170 1.41243 1.42941 1.00365 0.85027 0.77307 0.77939 0.77878 1.18592 1.20432 1.18748 1.23202 1.03845 0.87747 0.93409 0.87559 0.89236 0.87417 0.78539 0.86764 0.92249 0.91233 0.93839 0.93252 0.90311 0.89918 0.93677 0.91480 0.75020 0.87781 0.87457 0.92012 0.90831 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.30 71.24 0.73 0.30 16 2 C -0.01 -0.10 7.49 25.04 0.19 0.09 16 3 O 0.08 1.50 11.20 71.67 0.80 2.31 16 4 N -0.40 -8.93 12.07 -59.27 -0.72 -9.65 16 5 C -0.01 -0.13 11.99 85.71 1.03 0.90 16 6 C -0.21 -2.95 4.59 -19.74 -0.09 -3.04 16 7 C 0.13 1.23 5.37 85.56 0.46 1.69 16 8 N -0.50 -6.47 5.39 -887.56 -4.78 -11.26 16 9 C 0.05 0.94 5.44 86.65 0.47 1.42 16 10 C -0.13 -2.95 5.85 31.80 0.19 -2.76 16 11 C 0.17 3.33 0.94 4.48 0.00 3.34 16 12 C -0.15 -3.42 8.15 71.98 0.59 -2.83 16 13 N -0.71 -16.18 5.15 -418.97 -2.16 -18.34 16 14 C 0.54 18.64 7.04 87.66 0.62 19.26 16 15 O -0.55 -23.92 12.75 -3.02 -0.04 -23.95 16 16 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 17 S -0.15 -8.12 20.57 -56.49 -1.16 -9.28 16 18 C -0.55 -31.06 9.50 67.95 0.65 -30.42 16 19 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 20 C 0.01 0.75 5.49 84.86 0.47 1.21 16 21 N -0.91 -55.89 13.22 21.65 0.29 -55.60 16 22 Si 1.00 43.41 29.55 68.60 2.03 45.44 16 23 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 24 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 26 C 0.05 0.54 6.16 86.45 0.53 1.07 16 27 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.11 0.55 8.06 -2.39 -0.02 0.53 16 30 H 0.20 2.75 8.06 -2.91 -0.02 2.73 16 31 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.52 7.81 -2.39 -0.02 0.50 16 33 H 0.07 1.42 7.90 -2.38 -0.02 1.40 16 34 H 0.04 0.82 8.02 -2.39 -0.02 0.80 16 35 H 0.05 1.53 6.81 -2.38 -0.02 1.51 16 36 H 0.08 1.88 7.85 -2.38 -0.02 1.87 16 37 H 0.08 1.51 8.11 -2.39 -0.02 1.49 16 38 H 0.04 1.41 6.04 -2.38 -0.01 1.39 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.41 6.60 8.09 -92.71 -0.75 5.85 16 41 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 42 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 43 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.07 0.62 6.89 -2.39 -0.02 0.60 16 45 H 0.12 1.02 7.68 -2.39 -0.02 1.00 16 Total: -1.00 -78.41 381.95 0.78 -77.63 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.26 Total: 17.07 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 6.27 Total: -14.36 kcal Atomic # 7 Polarization: -87.48 SS G_CDS: -7.37 Total: -94.85 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.76 Total: -21.65 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.16 Total: -9.28 kcal Total: -78.41 0.78 -77.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671614846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.906 kcal (2) G-P(sol) polarization free energy of solvation -78.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds