Wall clock time and date at job start Tue Mar 31 2020 22:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29022 * 124.91766 * 2 1 4 4 C 1.31781 * 117.12784 * 179.67780 * 3 2 1 5 5 C 1.50693 * 122.75409 * 180.33193 * 4 3 2 6 6 C 1.33637 * 114.49800 * 0.52303 * 4 3 2 7 7 C 1.50697 * 126.04174 * 179.79013 * 6 4 3 8 8 C 1.50699 * 109.47250 * 89.71236 * 7 6 4 9 9 O 1.21276 * 119.99963 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99696 * 180.02562 * 8 7 6 11 11 C 1.47158 * 120.98554 * 359.97438 * 10 8 7 12 12 C 1.53298 * 108.38580 * 129.49064 * 11 10 8 13 13 O 1.42956 * 109.22271 * 52.29529 * 12 11 10 14 14 C 1.42957 * 114.17222 * 297.42305 * 13 12 11 15 15 H 1.09001 * 109.51201 * 302.65319 * 14 13 12 16 16 C 1.53006 * 109.51131 * 182.50383 * 14 13 12 17 17 N 1.46502 * 109.47297 * 65.25640 * 16 14 13 18 18 C 1.36928 * 120.00395 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99811 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00165 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00194 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00013 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47285 * 59.99753 * 22 20 18 24 24 H 1.48499 * 109.47004 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46945 * 299.99972 * 22 20 18 26 26 C 1.47151 * 120.98053 * 180.02562 * 10 8 7 27 27 S 1.70979 * 124.91424 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46949 * 270.03942 * 1 2 3 29 29 H 1.09003 * 109.46705 * 30.04208 * 1 2 3 30 30 H 1.08994 * 109.46779 * 150.03987 * 1 2 3 31 31 H 1.09005 * 109.47664 * 270.20355 * 5 4 3 32 32 H 1.09003 * 109.47291 * 30.20329 * 5 4 3 33 33 H 1.09004 * 109.47243 * 150.20078 * 5 4 3 34 34 H 1.09007 * 109.47098 * 329.71225 * 7 6 4 35 35 H 1.09001 * 109.47282 * 209.71881 * 7 6 4 36 36 H 1.08997 * 109.67763 * 249.20742 * 11 10 8 37 37 H 1.08993 * 109.68084 * 9.72282 * 11 10 8 38 38 H 1.08993 * 109.51188 * 172.22574 * 12 11 10 39 39 H 1.08999 * 109.50882 * 292.37689 * 12 11 10 40 40 H 1.09002 * 109.47221 * 185.25196 * 16 14 13 41 41 H 1.09003 * 109.47277 * 305.25169 * 16 14 13 42 42 H 0.97005 * 119.99464 * 359.97438 * 17 16 14 43 43 H 0.97002 * 120.00203 * 180.02562 * 21 20 18 44 44 H 1.09004 * 109.68538 * 110.78701 * 26 10 8 45 45 H 1.08996 * 109.71213 * 350.25116 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 0.0066 5 6 4.5307 2.0245 0.0148 6 6 3.9355 -0.4006 0.0014 7 6 5.3575 -0.8994 0.0023 8 6 5.8305 -1.0658 1.4234 9 8 5.0861 -0.8054 2.3448 10 7 7.0809 -1.5040 1.6704 11 6 8.0020 -1.8268 0.5691 12 6 9.3293 -1.1023 0.8207 13 8 9.7875 -1.4043 2.1408 14 6 8.9138 -0.9571 3.1802 15 1 8.7641 0.1190 3.0921 16 6 9.5334 -1.2781 4.5419 17 7 10.7625 -0.4998 4.7149 18 6 11.4948 -0.6231 5.8654 19 1 11.1660 -1.2938 6.6455 20 6 12.6596 0.1140 6.0290 21 7 13.0605 0.9310 5.0781 22 14 13.6582 -0.0537 7.5988 23 1 14.1001 -1.4626 7.7564 24 1 14.8476 0.8324 7.5258 25 1 12.8210 0.3355 8.7620 26 6 7.5651 -1.6748 3.0495 27 16 2.4857 -1.4020 0.0006 28 1 -0.3633 0.0007 1.0277 29 1 -0.3633 0.8897 -0.5145 30 1 -0.3633 -0.8903 -0.5132 31 1 4.7698 2.3056 -1.0109 32 1 4.0892 2.8766 0.5315 33 1 5.4419 1.7196 0.5296 34 1 5.9953 -0.1799 -0.5111 35 1 5.4061 -1.8595 -0.5116 36 1 8.1717 -2.9029 0.5361 37 1 7.5746 -1.4934 -0.3765 38 1 10.0695 -1.4354 0.0933 39 1 9.1810 -0.0268 0.7240 40 1 8.8272 -1.0223 5.3319 41 1 9.7665 -2.3417 4.5934 42 1 11.0579 0.1023 4.0141 43 1 13.8747 1.4458 5.1923 44 1 7.6909 -2.7357 3.2657 45 1 6.8489 -1.2405 3.7470 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673293650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:25 Heat of formation + Delta-G solvation = -19.745372 kcal Electronic energy + Delta-G solvation = -26964.114171 eV Core-core repulsion = 23109.101032 eV Total energy + Delta-G solvation = -3855.013138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.68664 -39.95892 -38.35886 -35.10745 -34.42767 -34.15961 -32.30673 -31.15867 -30.14049 -29.43333 -28.16748 -26.41870 -24.92739 -23.54715 -23.01181 -22.43197 -20.95539 -19.76984 -18.75847 -18.22350 -17.59822 -17.07129 -16.56914 -16.01850 -15.75510 -15.37811 -15.14430 -14.92095 -14.64393 -14.38531 -13.88875 -13.82836 -13.73925 -13.50357 -13.38234 -13.16521 -12.81747 -12.72793 -12.65659 -12.42781 -12.32175 -12.26992 -12.06608 -11.64104 -11.36616 -11.04395 -10.89991 -10.77758 -10.51114 -10.15726 -9.99831 -9.93860 -9.87107 -9.68793 -9.44311 -8.86183 -8.78811 -8.60422 -6.89451 -5.72619 -3.01433 0.42209 1.07686 1.48111 2.39476 2.47293 2.77347 3.46969 3.50774 3.52109 3.79429 3.89614 4.22354 4.37549 4.57527 4.60292 4.68175 4.68863 4.78312 4.98956 5.00759 5.02943 5.08297 5.08807 5.14613 5.27055 5.35903 5.42040 5.45190 5.55870 5.59974 5.61912 5.65563 5.70983 5.84988 5.92349 6.05110 6.23435 6.27207 6.55076 6.68199 7.14266 7.42522 7.51910 7.71670 7.94074 8.45413 9.57042 10.13741 10.49626 11.50109 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023345 B = 0.002137 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.092466 B =13098.296514 C =13320.087075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.047 3.953 3 N -0.471 5.471 4 C 0.082 3.918 5 C -0.080 4.080 6 C -0.210 4.210 7 C -0.061 4.061 8 C 0.515 3.485 9 O -0.526 6.526 10 N -0.613 5.613 11 C 0.070 3.930 12 C 0.045 3.955 13 O -0.357 6.357 14 C 0.074 3.926 15 H 0.064 0.936 16 C 0.163 3.837 17 N -0.726 5.726 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.086 3.914 27 S 0.127 5.873 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.054 0.946 40 H 0.036 0.964 41 H 0.030 0.970 42 H 0.387 0.613 43 H 0.255 0.745 44 H 0.078 0.922 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.409 -5.224 -18.190 29.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.231 4.231 3 N -0.186 5.186 4 C -0.050 4.050 5 C -0.139 4.139 6 C -0.331 4.331 7 C -0.103 4.103 8 C 0.302 3.698 9 O -0.402 6.402 10 N -0.348 5.348 11 C -0.054 4.054 12 C -0.033 4.033 13 O -0.275 6.275 14 C 0.015 3.985 15 H 0.082 0.918 16 C 0.035 3.965 17 N -0.371 5.371 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.740 3.260 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.037 4.037 27 S 0.383 5.617 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.133 0.867 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.123 0.877 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.047 0.953 42 H 0.221 0.779 43 H 0.065 0.935 44 H 0.096 0.904 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -23.091 -5.802 -17.493 29.544 hybrid contribution 1.128 0.861 0.503 1.505 sum -21.963 -4.941 -16.990 28.203 Atomic orbital electron populations 1.20444 0.85155 1.04101 1.04001 1.26910 1.01651 0.91060 1.03472 1.66125 1.04408 1.31646 1.16445 1.20091 0.90219 0.93919 1.00788 1.20376 0.95976 0.94878 1.02703 1.24902 0.98304 0.95792 1.14114 1.20052 0.90851 1.03809 0.95577 1.20423 0.81241 0.77014 0.91092 1.90736 1.53895 1.49489 1.46073 1.48166 1.12621 1.66218 1.07811 1.22567 0.91380 1.01545 0.89866 1.22913 0.94644 0.98962 0.86760 1.88167 1.46230 1.80173 1.12931 1.22812 0.88183 0.97643 0.89816 0.91815 1.20620 0.89910 0.96087 0.89888 1.42216 1.24048 1.50454 1.20349 1.19178 1.03025 1.20241 0.94657 0.91184 1.24747 0.98490 0.99553 0.98197 1.69663 1.25014 1.30317 1.33097 0.86245 0.79613 0.77259 0.82924 1.21264 1.21709 1.21269 1.22363 0.96784 1.01874 0.82663 1.83814 0.97350 1.12181 1.68368 0.89513 0.89261 0.90134 0.90532 0.90310 0.90879 0.86713 0.87608 0.90137 0.89152 0.87687 0.92751 0.94657 0.95261 0.77922 0.93504 0.90381 0.88024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.46 36.01 0.38 -0.11 16 2 C 0.05 0.48 7.39 -13.46 -0.10 0.38 16 3 N -0.47 -5.86 10.53 -8.06 -0.08 -5.94 16 4 C 0.08 0.97 6.74 -84.23 -0.57 0.40 16 5 C -0.08 -0.79 9.82 36.00 0.35 -0.43 16 6 C -0.21 -2.28 5.08 -35.92 -0.18 -2.46 16 7 C -0.06 -0.53 4.00 -29.04 -0.12 -0.65 16 8 C 0.52 6.42 7.70 -10.99 -0.08 6.34 16 9 O -0.53 -8.70 15.50 5.56 0.09 -8.62 16 10 N -0.61 -7.31 3.02 -172.25 -0.52 -7.83 16 11 C 0.07 0.62 6.54 -3.53 -0.02 0.59 16 12 C 0.05 0.52 6.99 37.31 0.26 0.78 16 13 O -0.36 -6.00 10.33 -35.23 -0.36 -6.36 16 14 C 0.07 1.25 2.81 -26.55 -0.07 1.18 16 15 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 16 C 0.16 3.35 5.93 -4.04 -0.02 3.33 16 17 N -0.73 -18.96 5.55 -59.90 -0.33 -19.29 16 18 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 19 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -28.67 13.06 55.49 0.72 -27.95 16 22 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.09 1.21 5.93 -3.51 -0.02 1.19 16 27 S 0.13 1.22 23.18 -107.50 -2.49 -1.27 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.72 7.36 -51.93 -0.38 0.33 16 34 H 0.11 0.75 6.96 -51.92 -0.36 0.39 16 35 H 0.11 0.67 8.01 -51.93 -0.42 0.26 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.50 6.05 -51.93 -0.31 0.18 16 38 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.39 10.71 7.67 -40.82 -0.31 10.39 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.10 1.54 7.08 -51.93 -0.37 1.17 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -36.57 383.91 -9.44 -46.02 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.77 Total: 4.73 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -0.45 Total: 3.03 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: -0.21 Total: -61.01 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.28 Total: -14.98 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.49 Total: -1.27 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.57 -9.44 -46.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673293650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.271 kcal (2) G-P(sol) polarization free energy of solvation -36.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds