Wall clock time and date at job start Tue Mar 31 2020 22:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29022 * 124.91766 * 2 1 4 4 C 1.31781 * 117.12784 * 179.67780 * 3 2 1 5 5 C 1.50693 * 122.75409 * 180.33193 * 4 3 2 6 6 C 1.33637 * 114.49800 * 0.52303 * 4 3 2 7 7 C 1.50697 * 126.04174 * 179.79013 * 6 4 3 8 8 C 1.50699 * 109.47250 * 89.71236 * 7 6 4 9 9 O 1.21276 * 119.99963 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99696 * 180.02562 * 8 7 6 11 11 C 1.47158 * 120.98554 * 359.97438 * 10 8 7 12 12 C 1.53298 * 108.38580 * 129.49064 * 11 10 8 13 13 O 1.42956 * 109.22271 * 52.29529 * 12 11 10 14 14 C 1.42957 * 114.17222 * 297.42305 * 13 12 11 15 15 H 1.09001 * 109.51201 * 302.65319 * 14 13 12 16 16 C 1.53006 * 109.51131 * 182.50383 * 14 13 12 17 17 N 1.46502 * 109.47297 * 65.25640 * 16 14 13 18 18 C 1.36928 * 120.00395 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99811 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00165 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00194 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00013 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47285 * 59.99753 * 22 20 18 24 24 H 1.48499 * 109.47004 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46945 * 299.99972 * 22 20 18 26 26 C 1.47151 * 120.98053 * 180.02562 * 10 8 7 27 27 S 1.70979 * 124.91424 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46949 * 270.03942 * 1 2 3 29 29 H 1.09003 * 109.46705 * 30.04208 * 1 2 3 30 30 H 1.08994 * 109.46779 * 150.03987 * 1 2 3 31 31 H 1.09005 * 109.47664 * 270.20355 * 5 4 3 32 32 H 1.09003 * 109.47291 * 30.20329 * 5 4 3 33 33 H 1.09004 * 109.47243 * 150.20078 * 5 4 3 34 34 H 1.09007 * 109.47098 * 329.71225 * 7 6 4 35 35 H 1.09001 * 109.47282 * 209.71881 * 7 6 4 36 36 H 1.08997 * 109.67763 * 249.20742 * 11 10 8 37 37 H 1.08993 * 109.68084 * 9.72282 * 11 10 8 38 38 H 1.08993 * 109.51188 * 172.22574 * 12 11 10 39 39 H 1.08999 * 109.50882 * 292.37689 * 12 11 10 40 40 H 1.09002 * 109.47221 * 185.25196 * 16 14 13 41 41 H 1.09003 * 109.47277 * 305.25169 * 16 14 13 42 42 H 0.97005 * 119.99464 * 359.97438 * 17 16 14 43 43 H 0.97002 * 120.00203 * 180.02562 * 21 20 18 44 44 H 1.09004 * 109.68538 * 110.78701 * 26 10 8 45 45 H 1.08996 * 109.71213 * 350.25116 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 0.0066 5 6 4.5307 2.0245 0.0148 6 6 3.9355 -0.4006 0.0014 7 6 5.3575 -0.8994 0.0023 8 6 5.8305 -1.0658 1.4234 9 8 5.0861 -0.8054 2.3448 10 7 7.0809 -1.5040 1.6704 11 6 8.0020 -1.8268 0.5691 12 6 9.3293 -1.1023 0.8207 13 8 9.7875 -1.4043 2.1408 14 6 8.9138 -0.9571 3.1802 15 1 8.7641 0.1190 3.0921 16 6 9.5334 -1.2781 4.5419 17 7 10.7625 -0.4998 4.7149 18 6 11.4948 -0.6231 5.8654 19 1 11.1660 -1.2938 6.6455 20 6 12.6596 0.1140 6.0290 21 7 13.0605 0.9310 5.0781 22 14 13.6582 -0.0537 7.5988 23 1 14.1001 -1.4626 7.7564 24 1 14.8476 0.8324 7.5258 25 1 12.8210 0.3355 8.7620 26 6 7.5651 -1.6748 3.0495 27 16 2.4857 -1.4020 0.0006 28 1 -0.3633 0.0007 1.0277 29 1 -0.3633 0.8897 -0.5145 30 1 -0.3633 -0.8903 -0.5132 31 1 4.7698 2.3056 -1.0109 32 1 4.0892 2.8766 0.5315 33 1 5.4419 1.7196 0.5296 34 1 5.9953 -0.1799 -0.5111 35 1 5.4061 -1.8595 -0.5116 36 1 8.1717 -2.9029 0.5361 37 1 7.5746 -1.4934 -0.3765 38 1 10.0695 -1.4354 0.0933 39 1 9.1810 -0.0268 0.7240 40 1 8.8272 -1.0223 5.3319 41 1 9.7665 -2.3417 4.5934 42 1 11.0579 0.1023 4.0141 43 1 13.8747 1.4458 5.1923 44 1 7.6909 -2.7357 3.2657 45 1 6.8489 -1.2405 3.7470 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673293650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:24 Heat of formation + Delta-G solvation = -46.133737 kcal Electronic energy + Delta-G solvation = -26965.258456 eV Core-core repulsion = 23109.101032 eV Total energy + Delta-G solvation = -3856.157424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.62211 -40.81942 -39.48686 -36.68009 -35.76459 -34.91844 -33.91896 -32.22904 -31.48358 -30.10377 -29.29615 -27.69770 -26.15714 -24.86324 -23.94615 -23.65361 -22.36209 -20.68305 -19.57541 -19.24660 -18.96133 -18.42526 -17.73458 -17.11091 -16.71927 -16.66722 -16.16428 -15.96535 -15.81600 -15.73721 -15.06245 -15.02239 -14.63415 -14.49230 -14.31223 -14.20504 -14.10627 -13.99405 -13.58147 -13.39423 -13.24482 -13.03194 -12.92291 -12.81644 -12.74409 -12.61842 -12.28011 -12.09856 -12.08004 -11.87881 -11.64278 -11.21299 -10.99076 -10.95618 -10.64579 -10.21880 -9.64614 -9.52923 -9.02116 -7.94690 -5.24398 -0.33327 0.36854 0.72923 1.46521 1.47600 1.51148 1.57063 1.63728 1.89764 2.56064 2.76548 3.13761 3.38892 3.41048 3.54338 3.68149 3.90734 3.95816 3.97287 4.04108 4.07326 4.17297 4.33920 4.37539 4.42688 4.47556 4.52129 4.53473 4.62847 4.66174 4.68246 4.75455 4.77665 4.89427 4.93400 4.94991 5.07303 5.08009 5.24015 5.32153 5.47357 6.23360 6.24500 6.28195 6.76077 7.00595 7.32685 8.06182 8.31177 9.28717 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023345 B = 0.002137 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.092466 B =13098.296514 C =13320.087075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.038 3.962 3 N -0.505 5.505 4 C 0.059 3.941 5 C -0.078 4.078 6 C -0.224 4.224 7 C -0.055 4.055 8 C 0.514 3.486 9 O -0.575 6.575 10 N -0.613 5.613 11 C 0.073 3.927 12 C 0.035 3.965 13 O -0.388 6.388 14 C 0.090 3.910 15 H 0.047 0.953 16 C 0.159 3.841 17 N -0.740 5.740 18 C -0.249 4.249 19 H 0.077 0.923 20 C -0.077 4.077 21 N -0.969 5.969 22 Si 0.978 3.022 23 H -0.277 1.277 24 H -0.294 1.294 25 H -0.277 1.277 26 C 0.096 3.904 27 S 0.144 5.856 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.095 0.905 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.052 0.948 40 H 0.040 0.960 41 H 0.031 0.969 42 H 0.375 0.625 43 H 0.252 0.748 44 H 0.087 0.913 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.136 -6.692 -19.629 31.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.239 4.239 3 N -0.222 5.222 4 C -0.072 4.072 5 C -0.137 4.137 6 C -0.345 4.345 7 C -0.096 4.096 8 C 0.303 3.697 9 O -0.453 6.453 10 N -0.346 5.346 11 C -0.049 4.049 12 C -0.042 4.042 13 O -0.307 6.307 14 C 0.031 3.969 15 H 0.065 0.935 16 C 0.032 3.968 17 N -0.383 5.383 18 C -0.381 4.381 19 H 0.095 0.905 20 C -0.269 4.269 21 N -0.619 5.619 22 Si 0.806 3.194 23 H -0.203 1.203 24 H -0.220 1.220 25 H -0.203 1.203 26 C -0.028 4.028 27 S 0.400 5.600 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.113 0.887 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.207 0.793 43 H 0.060 0.940 44 H 0.105 0.895 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.843 -7.310 -18.956 31.326 hybrid contribution 1.283 1.285 0.901 2.027 sum -22.560 -6.025 -18.056 29.517 Atomic orbital electron populations 1.20623 0.82853 1.05512 1.04806 1.27564 1.03193 0.90925 1.02192 1.66165 1.05032 1.32917 1.18040 1.20431 0.90512 0.94945 1.01356 1.20390 0.95407 0.94073 1.03823 1.25178 0.99580 0.95768 1.13993 1.20181 0.90026 1.06245 0.93173 1.21078 0.80718 0.75677 0.92206 1.90720 1.55242 1.51512 1.47873 1.48246 1.13088 1.65827 1.07485 1.22784 0.89442 1.02221 0.90411 1.23268 0.96873 0.99520 0.84547 1.88100 1.47255 1.80396 1.14983 1.22420 0.89166 0.96882 0.88423 0.93538 1.20762 0.88140 0.95217 0.92645 1.42404 1.25539 1.50919 1.19411 1.19622 1.03248 1.19722 0.95482 0.90476 1.25630 0.99922 0.99734 1.01624 1.69830 1.25420 1.31521 1.35170 0.85152 0.77742 0.77380 0.79102 1.20259 1.22029 1.20333 1.22045 0.94697 1.01700 0.84326 1.83658 0.96835 1.11615 1.67847 0.88857 0.88845 0.87731 0.88445 0.91439 0.91096 0.83982 0.84328 0.88686 0.84792 0.85321 0.92929 0.94198 0.95128 0.79326 0.93963 0.89494 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.46 71.24 0.75 -0.13 16 2 C 0.04 0.75 7.39 88.52 0.65 1.40 16 3 N -0.51 -12.39 10.53 -179.41 -1.89 -14.28 16 4 C 0.06 1.36 6.74 41.52 0.28 1.64 16 5 C -0.08 -1.48 9.82 71.23 0.70 -0.78 16 6 C -0.22 -4.48 5.08 24.64 0.13 -4.35 16 7 C -0.05 -0.79 4.00 29.10 0.12 -0.67 16 8 C 0.51 11.91 7.70 87.66 0.68 12.59 16 9 O -0.57 -18.87 15.50 -3.02 -0.05 -18.92 16 10 N -0.61 -13.39 3.02 -817.27 -2.47 -15.86 16 11 C 0.07 1.04 6.54 86.35 0.56 1.60 16 12 C 0.03 0.72 6.99 72.08 0.50 1.22 16 13 O -0.39 -12.84 10.33 -148.98 -1.54 -14.38 16 14 C 0.09 3.06 2.81 30.71 0.09 3.14 16 15 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 16 C 0.16 6.64 5.93 86.38 0.51 7.15 16 17 N -0.74 -39.42 5.55 -343.44 -1.91 -41.33 16 18 C -0.25 -14.37 9.99 84.03 0.84 -13.53 16 19 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 20 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 21 N -0.97 -60.67 13.06 21.65 0.28 -60.39 16 22 Si 0.98 46.98 29.55 68.60 2.03 49.00 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 26 C 0.10 2.67 5.93 86.37 0.51 3.18 16 27 S 0.14 2.55 23.18 -56.49 -1.31 1.24 16 28 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.62 16 31 H 0.10 1.36 8.14 -2.38 -0.02 1.35 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.34 7.36 -2.38 -0.02 1.32 16 34 H 0.14 1.28 6.96 -2.38 -0.02 1.26 16 35 H 0.14 1.11 8.01 -2.39 -0.02 1.09 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.13 0.76 6.05 -2.39 -0.01 0.74 16 38 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.37 21.40 7.67 -92.70 -0.71 20.69 16 43 H 0.25 15.22 8.31 -92.71 -0.77 14.44 16 44 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.09 2.68 7.08 -2.39 -0.02 2.66 16 Total: -1.00 -81.66 383.91 0.23 -81.43 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.30 Total: 25.07 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 6.78 Total: 8.41 kcal Atomic # 7 Polarization: -125.88 SS G_CDS: -5.98 Total: -131.86 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -1.59 Total: -33.30 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.00 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.31 Total: 1.24 kcal Total: -81.66 0.23 -81.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673293650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.294 kcal (2) G-P(sol) polarization free energy of solvation -81.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds