Wall clock time and date at job start Tue Mar 31 2020 22:18:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 C 1.33816 * 122.44881 * 2 1
4 4 S 1.70618 * 110.95422 * 179.74770 * 3 2 1
5 5 C 1.75822 * 91.56566 * 0.22835 * 4 3 2
6 6 C 1.46586 * 125.46138 * 179.97438 * 5 4 3
7 7 O 1.21700 * 119.99943 * 180.02562 * 6 5 4
8 8 N 1.34777 * 119.99732 * 0.02562 * 6 5 4
9 9 C 1.46501 * 119.99746 * 180.02562 * 8 6 5
10 10 H 1.08998 * 109.47032 * 34.99930 * 9 8 6
11 11 C 1.52997 * 109.46913 * 274.99914 * 9 8 6
12 12 C 1.53004 * 109.47086 * 155.00345 * 9 8 6
13 13 H 1.09005 * 109.46720 * 294.99842 * 12 9 8
14 14 C 1.52998 * 109.47158 * 54.99548 * 12 9 8
15 15 N 1.46893 * 109.47141 * 174.99987 * 12 9 8
16 16 C 1.46897 * 110.99975 * 154.99731 * 15 12 9
17 17 C 1.50705 * 109.47529 * 179.97438 * 16 15 12
18 18 O 1.21294 * 119.99479 * 0.02562 * 17 16 15
19 19 N 1.34770 * 120.00536 * 179.97438 * 17 16 15
20 20 C 1.37090 * 120.00374 * 180.02562 * 19 17 16
21 21 H 1.08008 * 120.00048 * 359.97438 * 20 19 17
22 22 C 1.38956 * 120.00383 * 180.02562 * 20 19 17
23 23 N 1.31415 * 119.99686 * 359.97438 * 22 20 19
24 24 Si 1.86803 * 120.00162 * 180.02562 * 22 20 19
25 25 H 1.48500 * 109.47157 * 89.99986 * 24 22 20
26 26 H 1.48494 * 109.46782 * 210.00236 * 24 22 20
27 27 H 1.48502 * 109.46872 * 329.99916 * 24 22 20
28 28 C 1.36649 * 109.08353 * 0.02562 * 5 4 3
29 29 H 1.09006 * 109.47125 * 90.02761 * 1 2 3
30 30 H 1.09004 * 109.47293 * 210.02009 * 1 2 3
31 31 H 1.08994 * 109.47432 * 330.02776 * 1 2 3
32 32 H 1.08002 * 124.52447 * 0.02562 * 3 2 1
33 33 H 0.96994 * 119.99809 * 0.02562 * 8 6 5
34 34 H 1.09003 * 109.47705 * 299.99995 * 11 9 8
35 35 H 1.09003 * 109.47312 * 60.00289 * 11 9 8
36 36 H 1.09009 * 109.46943 * 180.02562 * 11 9 8
37 37 H 1.09003 * 109.46961 * 180.02562 * 14 12 9
38 38 H 1.08997 * 109.47242 * 300.00545 * 14 12 9
39 39 H 1.09005 * 109.47065 * 60.00505 * 14 12 9
40 40 H 1.00895 * 110.99972 * 278.94703 * 15 12 9
41 41 H 1.08996 * 109.47543 * 300.00010 * 16 15 12
42 42 H 1.09000 * 109.47019 * 59.99889 * 16 15 12
43 43 H 0.97010 * 119.99882 * 0.02562 * 19 17 16
44 44 H 0.96992 * 119.99729 * 179.97438 * 23 22 20
45 45 H 1.08001 * 123.35020 * 180.02562 * 28 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2249 1.1292 0.0000
4 16 3.8969 0.7892 0.0070
5 6 3.5937 -0.9426 0.0030
6 6 4.6232 -1.9862 0.0055
7 8 4.3002 -3.1596 0.0018
8 7 5.9273 -1.6462 0.0119
9 6 6.9562 -2.6891 0.0138
10 1 6.6146 -3.5375 -0.5791
11 6 7.2187 -3.1438 1.4509
12 6 8.2477 -2.1326 -0.5889
13 1 8.0838 -1.8911 -1.6392
14 6 8.6596 -0.8677 0.1670
15 7 9.3128 -3.1381 -0.4781
16 6 10.3397 -2.9329 -1.5083
17 6 11.4135 -3.9803 -1.3629
18 8 11.3311 -4.8158 -0.4875
19 7 12.4648 -3.9892 -2.2061
20 6 13.4413 -4.9423 -2.0742
21 1 13.3684 -5.6858 -1.2942
22 6 14.5255 -4.9512 -2.9433
23 7 14.6145 -4.0462 -3.8921
24 14 15.8557 -6.2504 -2.7640
25 1 15.5040 -7.4358 -3.5864
26 1 17.1541 -5.6961 -3.2243
27 1 15.9664 -6.6519 -1.3386
28 6 2.2447 -1.1601 -0.0040
29 1 -0.3634 -0.0005 -1.0277
30 1 -0.3634 -0.8898 0.5142
31 1 -0.3634 0.8902 0.5134
32 1 1.8025 2.1232 0.0004
33 1 6.1846 -0.7110 0.0152
34 1 7.5603 -2.2954 2.0438
35 1 6.2986 -3.5403 1.8803
36 1 7.9845 -3.9195 1.4523
37 1 9.5795 -0.4710 -0.2628
38 1 7.8692 -0.1217 0.0847
39 1 8.8234 -1.1093 1.2172
40 1 9.7204 -3.1328 0.4448
41 1 9.8850 -3.0128 -2.4956
42 1 10.7800 -1.9428 -1.3901
43 1 12.5305 -3.3212 -2.9065
44 1 15.3715 -4.0522 -4.4984
45 1 1.8020 -2.1452 -0.0073
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001674661670.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:18:38
Heat of formation + Delta-G solvation = -68.790544 kcal
Electronic energy + Delta-G solvation = -26055.820995 eV
Core-core repulsion = 22198.681099 eV
Total energy + Delta-G solvation = -3857.139896 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-41.17614 -40.20094 -39.24178 -38.37911 -36.06270 -35.41726 -33.28536 -32.68114
-31.44433 -30.06421 -28.68741 -27.99133 -26.25964 -25.89362 -24.49151 -21.86503
-21.15797 -20.93764 -19.94782 -19.89488 -19.50690 -17.81785 -17.26927 -17.09767
-16.84289 -16.43116 -16.25755 -16.14085 -15.65862 -15.57202 -15.18180 -14.79078
-14.72037 -14.68404 -14.15278 -14.05701 -13.90242 -13.50416 -13.35356 -13.22488
-13.14102 -13.06277 -12.89963 -12.88397 -12.79645 -12.57832 -12.40963 -12.11799
-11.95663 -11.88299 -11.85245 -11.50021 -11.23922 -10.39162 -10.27257 -10.00478
-9.83667 -9.34606 -9.31722 -8.46124 -5.94534 -0.52451 0.47260 0.90742
1.33421 1.38427 1.42306 1.54752 1.93238 2.06630 2.11007 2.30402
2.97475 3.21462 3.53818 3.65434 3.79440 3.88531 4.06646 4.18196
4.20524 4.29832 4.39006 4.42349 4.46755 4.52520 4.62297 4.68730
4.69846 4.81657 4.84904 4.87827 4.94677 5.00716 5.05626 5.18470
5.37562 5.39709 5.40897 5.42121 5.46991 5.88442 6.09353 6.37607
6.40505 6.61123 7.06019 7.13663 7.57466 8.13012 8.71182
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.032145 B = 0.001745 C = 0.001716
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 870.838662 B =16041.848053 C =16316.376653
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.094 4.094
2 C -0.131 4.131
3 C -0.226 4.226
4 S 0.244 5.756
5 C -0.298 4.298
6 C 0.587 3.413
7 O -0.574 6.574
8 N -0.706 5.706
9 C 0.160 3.840
10 H 0.067 0.933
11 C -0.156 4.156
12 C 0.084 3.916
13 H 0.091 0.909
14 C -0.186 4.186
15 N -0.675 5.675
16 C 0.067 3.933
17 C 0.437 3.563
18 O -0.623 6.623
19 N -0.573 5.573
20 C -0.334 4.334
21 H 0.078 0.922
22 C -0.012 4.012
23 N -0.919 5.919
24 Si 0.992 3.008
25 H -0.273 1.273
26 H -0.270 1.270
27 H -0.273 1.273
28 C -0.060 4.060
29 H 0.077 0.923
30 H 0.068 0.932
31 H 0.083 0.917
32 H 0.198 0.802
33 H 0.408 0.592
34 H 0.075 0.925
35 H 0.042 0.958
36 H 0.067 0.933
37 H 0.066 0.934
38 H 0.081 0.919
39 H 0.068 0.932
40 H 0.350 0.650
41 H 0.102 0.898
42 H 0.074 0.926
43 H 0.397 0.603
44 H 0.277 0.723
45 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.869 19.144 6.555 32.061
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.143 4.143
3 C -0.363 4.363
4 S 0.513 5.487
5 C -0.418 4.418
6 C 0.375 3.625
7 O -0.455 6.455
8 N -0.360 5.360
9 C 0.055 3.945
10 H 0.085 0.915
11 C -0.215 4.215
12 C -0.027 4.027
13 H 0.109 0.891
14 C -0.244 4.244
15 N -0.308 5.308
16 C -0.065 4.065
17 C 0.225 3.775
18 O -0.510 6.510
19 N -0.210 5.210
20 C -0.464 4.464
21 H 0.096 0.904
22 C -0.212 4.212
23 N -0.560 5.560
24 Si 0.816 3.184
25 H -0.198 1.198
26 H -0.195 1.195
27 H -0.198 1.198
28 C -0.094 4.094
29 H 0.095 0.905
30 H 0.087 0.913
31 H 0.102 0.898
32 H 0.215 0.785
33 H 0.246 0.754
34 H 0.093 0.907
35 H 0.062 0.938
36 H 0.086 0.914
37 H 0.085 0.915
38 H 0.100 0.900
39 H 0.087 0.913
40 H 0.170 0.830
41 H 0.120 0.880
42 H 0.092 0.908
43 H 0.231 0.769
44 H 0.087 0.913
45 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges -23.958 18.252 6.624 30.839
hybrid contribution 0.040 -0.416 -0.108 0.432
sum -23.918 17.836 6.516 30.539
Atomic orbital electron populations
1.20573 0.87732 1.03763 1.03179 1.18970 0.99257 0.90933 1.05155
1.25580 0.98275 1.04459 1.08017 1.82713 1.04327 0.94879 1.66765
1.24535 0.97662 0.98857 1.20782 1.17310 0.82440 0.87341 0.75443
1.90822 1.82351 1.20292 1.52028 1.45892 1.04596 1.10707 1.74756
1.20724 0.86503 0.89851 0.97455 0.91455 1.22099 1.01519 1.02215
0.95640 1.21702 0.90088 0.90121 1.00781 0.89076 1.22581 1.02823
0.97571 1.01462 1.59932 1.12634 1.50519 1.07683 1.21548 0.91228
0.95933 0.97780 1.20904 0.84353 0.88513 0.83766 1.90500 1.79363
1.43207 1.37889 1.41916 1.19870 1.29189 1.30045 1.19667 1.01177
1.09774 1.15786 0.90389 1.26016 1.00270 0.99945 0.94960 1.69667
1.32568 1.35504 1.18293 0.84941 0.77208 0.77772 0.78494 1.19839
1.19456 1.19796 1.20842 0.91267 1.00612 0.96719 0.90464 0.91284
0.89834 0.78475 0.75373 0.90663 0.93847 0.91385 0.91470 0.90044
0.91310 0.82989 0.87973 0.90846 0.76931 0.91321 0.84002
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -0.75 10.13 71.23 0.72 -0.03 16
2 C -0.13 -1.68 5.78 -21.05 -0.12 -1.81 16
3 C -0.23 -2.19 10.67 66.81 0.71 -1.48 16
4 S 0.24 2.69 22.16 -56.49 -1.25 1.44 16
5 C -0.30 -5.79 6.45 24.08 0.16 -5.64 16
6 C 0.59 14.78 7.75 86.42 0.67 15.45 16
7 O -0.57 -19.55 16.50 -4.35 -0.07 -19.62 16
8 N -0.71 -14.24 4.98 -446.59 -2.23 -16.47 16
9 C 0.16 3.86 2.63 44.99 0.12 3.98 16
10 H 0.07 2.09 7.58 -2.39 -0.02 2.07 16
11 C -0.16 -3.81 8.86 71.98 0.64 -3.18 16
12 C 0.08 1.82 2.64 44.92 0.12 1.94 16
13 H 0.09 1.88 7.80 -2.38 -0.02 1.86 16
14 C -0.19 -2.91 8.68 71.98 0.62 -2.28 16
15 N -0.67 -20.31 5.23 -495.58 -2.59 -22.90 16
16 C 0.07 2.21 5.97 85.56 0.51 2.72 16
17 C 0.44 20.58 7.82 87.66 0.69 21.27 16
18 O -0.62 -34.49 15.78 -3.07 -0.05 -34.54 16
19 N -0.57 -29.22 5.29 -306.98 -1.62 -30.85 16
20 C -0.33 -19.05 9.68 84.04 0.81 -18.23 16
21 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16
22 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16
23 N -0.92 -49.43 13.05 21.67 0.28 -49.15 16
24 Si 0.99 43.10 29.55 68.60 2.03 45.13 16
25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16
26 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16
27 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16
28 C -0.06 -1.10 9.80 21.72 0.21 -0.89 16
29 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16
30 H 0.07 0.56 8.13 -2.38 -0.02 0.54 16
31 H 0.08 0.40 8.12 -2.39 -0.02 0.38 16
32 H 0.20 0.71 8.06 -2.91 -0.02 0.69 16
33 H 0.41 5.73 5.69 -92.71 -0.53 5.20 16
34 H 0.07 1.48 6.57 -2.39 -0.02 1.46 16
35 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16
36 H 0.07 1.88 7.13 -2.38 -0.02 1.86 16
37 H 0.07 1.07 7.45 -2.39 -0.02 1.05 16
38 H 0.08 0.85 6.29 -2.39 -0.02 0.84 16
39 H 0.07 1.09 6.55 -2.38 -0.02 1.07 16
40 H 0.35 10.95 7.39 -89.70 -0.66 10.28 16
41 H 0.10 3.07 8.05 -2.39 -0.02 3.05 16
42 H 0.07 2.02 7.44 -2.39 -0.02 2.00 16
43 H 0.40 19.10 7.90 -92.70 -0.73 18.37 16
44 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16
45 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16
Total: -1.00 -74.60 386.16 -0.05 -74.65
By element:
Atomic # 1 Polarization: 41.54 SS G_CDS: -0.87 Total: 40.66 kcal
Atomic # 6 Polarization: 5.32 SS G_CDS: 6.33 Total: 11.64 kcal
Atomic # 7 Polarization: -113.21 SS G_CDS: -6.16 Total: -119.36 kcal
Atomic # 8 Polarization: -54.04 SS G_CDS: -0.12 Total: -54.16 kcal
Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal
Atomic # 16 Polarization: 2.69 SS G_CDS: -1.25 Total: 1.44 kcal
Total: -74.60 -0.05 -74.65 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001674661670.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.861 kcal
(2) G-P(sol) polarization free energy of solvation -74.604 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.743 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.651 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.791 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds