Wall clock time and date at job start Tue Mar 31 2020 22:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33816 * 122.44779 * 2 1 4 4 S 1.70622 * 110.95079 * 179.74591 * 3 2 1 5 5 C 1.75835 * 91.56388 * 0.35466 * 4 3 2 6 6 C 1.46583 * 125.45761 * 179.91676 * 5 4 3 7 7 O 1.21700 * 120.00055 * 179.69789 * 6 5 4 8 8 N 1.34780 * 120.00088 * 359.69148 * 6 5 4 9 9 C 1.46492 * 119.99930 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47696 * 325.00239 * 9 8 6 11 11 C 1.53006 * 109.47457 * 85.00142 * 9 8 6 12 12 C 1.53002 * 109.47204 * 204.99895 * 9 8 6 13 13 H 1.09002 * 109.47070 * 300.00167 * 12 9 8 14 14 C 1.52997 * 109.46817 * 59.99987 * 12 9 8 15 15 N 1.46899 * 109.47394 * 180.02562 * 12 9 8 16 16 C 1.46894 * 111.00220 * 155.00114 * 15 12 9 17 17 C 1.50694 * 109.47381 * 179.97438 * 16 15 12 18 18 O 1.21293 * 120.00187 * 359.97438 * 17 16 15 19 19 N 1.34776 * 120.00497 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00594 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99599 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00381 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99555 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00086 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47318 * 59.99945 * 24 22 20 26 26 H 1.48499 * 109.47235 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47089 * 299.99911 * 24 22 20 28 28 C 1.36645 * 109.08128 * 359.64901 * 5 4 3 29 29 H 1.08999 * 109.47260 * 269.97831 * 1 2 3 30 30 H 1.09002 * 109.46590 * 29.97989 * 1 2 3 31 31 H 1.08999 * 109.47224 * 149.97197 * 1 2 3 32 32 H 1.07998 * 124.52517 * 0.05611 * 3 2 1 33 33 H 0.96998 * 119.99716 * 0.02562 * 8 6 5 34 34 H 1.08996 * 109.47165 * 179.97438 * 11 9 8 35 35 H 1.09001 * 109.46726 * 300.00014 * 11 9 8 36 36 H 1.09002 * 109.46589 * 59.99419 * 11 9 8 37 37 H 1.08998 * 109.47533 * 179.97438 * 14 12 9 38 38 H 1.08996 * 109.47853 * 300.00202 * 14 12 9 39 39 H 1.09002 * 109.47153 * 60.00231 * 14 12 9 40 40 H 1.00900 * 110.99934 * 278.95621 * 15 12 9 41 41 H 1.08998 * 109.47346 * 299.99916 * 16 15 12 42 42 H 1.09007 * 109.47035 * 60.00148 * 16 15 12 43 43 H 0.97005 * 119.99767 * 359.97438 * 19 17 16 44 44 H 0.97002 * 119.99638 * 180.02562 * 23 22 20 45 45 H 1.08002 * 123.34839 * 180.28639 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8970 0.7892 0.0071 5 6 3.5937 -0.9428 -0.0008 6 6 4.6231 -1.9863 -0.0013 7 8 4.3002 -3.1597 -0.0015 8 7 5.9273 -1.6464 -0.0016 9 6 6.9561 -2.6893 -0.0026 10 1 6.6123 -3.5395 0.5864 11 6 7.2243 -3.1398 -1.4400 12 6 8.2453 -2.1346 0.6068 13 1 8.5891 -1.2844 0.0177 14 6 7.9771 -1.6841 2.0441 15 7 9.2771 -3.1802 0.6052 16 6 10.6230 -2.5917 0.6050 17 6 11.6525 -3.6921 0.6040 18 8 11.2998 -4.8526 0.6040 19 7 12.9652 -3.3870 0.6042 20 6 13.9019 -4.3881 0.6028 21 1 13.5877 -5.4214 0.6020 22 6 15.2553 -4.0734 0.6025 23 7 15.6374 -2.8161 0.6030 24 14 16.5314 -5.4375 0.6013 25 1 16.3579 -6.2766 -0.6116 26 1 17.8920 -4.8426 0.6005 27 1 16.3588 -6.2779 1.8134 28 6 2.2446 -1.1601 -0.0004 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3632 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5143 32 1 1.8025 2.1232 0.0009 33 1 6.1847 -0.7112 -0.0012 34 1 7.9900 -3.9155 -1.4408 35 1 6.3058 -3.5350 -1.8742 36 1 7.5681 -2.2896 -2.0291 37 1 8.8956 -1.2894 2.4785 38 1 7.2117 -0.9082 2.0450 39 1 7.6332 -2.5343 2.6332 40 1 9.1570 -3.8079 1.3860 41 1 10.7496 -1.9745 -0.2844 42 1 10.7505 -1.9762 1.4956 43 1 13.2474 -2.4589 0.6046 44 1 16.5822 -2.5964 0.6024 45 1 1.8019 -2.1452 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674661671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:41 Heat of formation + Delta-G solvation = -47.978933 kcal Electronic energy + Delta-G solvation = -26043.198657 eV Core-core repulsion = 22186.961219 eV Total energy + Delta-G solvation = -3856.237437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.18840 -38.71450 -38.27136 -37.11218 -34.55074 -33.81426 -31.81948 -31.23629 -30.45597 -29.57904 -28.20578 -26.34460 -25.09614 -24.18846 -23.00327 -20.89984 -20.81007 -19.41647 -19.22826 -18.65795 -17.90397 -16.64918 -16.33575 -15.89111 -15.40584 -15.24938 -15.05013 -14.57345 -14.30369 -14.20320 -13.88624 -13.85360 -13.76005 -13.56565 -13.49464 -13.06557 -12.64194 -12.47184 -12.41741 -12.30663 -12.19193 -12.08797 -11.59538 -11.55266 -11.46365 -11.35012 -11.28191 -11.01532 -10.70023 -10.44068 -10.24583 -10.20729 -9.50021 -9.39356 -9.17457 -8.82110 -8.47347 -8.07303 -7.96017 -6.41842 -3.82593 0.13419 1.07384 1.47438 1.97426 2.83973 2.96969 3.20520 3.26162 3.30822 3.90579 4.10810 4.33371 4.42717 4.52588 4.63877 4.77427 4.88792 4.90760 5.11521 5.13416 5.17515 5.18415 5.26362 5.41961 5.44985 5.49068 5.53424 5.64536 5.68199 5.82032 5.87960 5.89184 5.98081 5.98775 6.04390 6.08775 6.23832 6.35868 6.55419 7.14533 7.24537 7.55112 7.61130 7.95115 8.05971 8.61036 9.17828 9.53989 10.05500 10.75776 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036417 B = 0.001741 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.691168 B =16074.237673 C =16499.550145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.116 4.116 3 C -0.236 4.236 4 S 0.198 5.802 5 C -0.260 4.260 6 C 0.591 3.409 7 O -0.525 6.525 8 N -0.719 5.719 9 C 0.154 3.846 10 H 0.092 0.908 11 C -0.153 4.153 12 C 0.077 3.923 13 H 0.082 0.918 14 C -0.185 4.185 15 N -0.657 5.657 16 C 0.053 3.947 17 C 0.440 3.560 18 O -0.582 6.582 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.274 1.274 28 C -0.054 4.054 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.168 0.832 33 H 0.394 0.606 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.353 0.647 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.289 13.824 -0.436 29.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C -0.373 4.373 4 S 0.466 5.534 5 C -0.381 4.381 6 C 0.376 3.624 7 O -0.403 6.403 8 N -0.370 5.370 9 C 0.050 3.950 10 H 0.110 0.890 11 C -0.211 4.211 12 C -0.034 4.034 13 H 0.100 0.900 14 C -0.244 4.244 15 N -0.289 5.289 16 C -0.080 4.080 17 C 0.226 3.774 18 O -0.466 6.466 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.087 4.087 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.186 0.814 33 H 0.228 0.772 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.173 0.827 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -25.189 13.086 -1.108 28.407 hybrid contribution -0.254 0.168 0.922 0.972 sum -25.444 13.254 -0.186 28.689 Atomic orbital electron populations 1.20525 0.89305 1.02986 1.02530 1.18807 0.98040 0.91494 1.04627 1.25136 0.98457 1.03402 1.10340 1.82995 1.04174 0.98265 1.67960 1.24669 0.98088 0.97178 1.18125 1.16891 0.81629 0.87366 0.76477 1.90852 1.81567 1.18113 1.49785 1.45952 1.05419 1.10285 1.75346 1.20941 0.85757 0.90020 0.98280 0.88989 1.22049 1.02223 1.02298 0.94551 1.21752 0.91897 0.94565 0.95225 0.90020 1.22547 1.02020 1.02087 0.97750 1.59991 1.00396 1.16990 1.51547 1.21690 0.88749 0.96372 1.01187 1.19790 0.83342 0.89748 0.84556 1.90534 1.80325 1.20434 1.55310 1.41850 1.04066 1.09698 1.64394 1.19662 0.85636 0.89979 1.47678 0.87956 1.25256 0.98091 0.97256 0.97297 1.69605 1.17383 1.16789 1.50576 0.85914 0.78910 0.80286 0.79089 1.19879 1.20997 1.19926 1.20687 0.91029 1.00050 0.96979 0.91054 0.91461 0.91172 0.81437 0.77171 0.89295 0.93005 0.93112 0.92092 0.92317 0.92068 0.82651 0.89571 0.93767 0.77491 0.91844 0.82860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.46 10.13 36.01 0.36 -0.10 16 2 C -0.12 -0.84 5.78 -106.45 -0.62 -1.46 16 3 C -0.24 -1.50 10.67 29.18 0.31 -1.19 16 4 S 0.20 1.34 22.16 -107.50 -2.38 -1.05 16 5 C -0.26 -2.55 6.45 -36.79 -0.24 -2.79 16 6 C 0.59 7.16 7.75 -12.89 -0.10 7.06 16 7 O -0.53 -8.29 16.50 5.19 0.09 -8.21 16 8 N -0.72 -7.37 4.38 -55.14 -0.24 -7.61 16 9 C 0.15 1.85 2.34 -67.93 -0.16 1.69 16 10 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 11 C -0.15 -1.97 9.33 37.16 0.35 -1.62 16 12 C 0.08 0.88 2.22 -67.71 -0.15 0.73 16 13 H 0.08 0.86 7.80 -51.93 -0.40 0.46 16 14 C -0.19 -1.89 9.01 37.16 0.33 -1.55 16 15 N -0.66 -9.98 5.11 -108.00 -0.55 -10.54 16 16 C 0.05 0.88 5.96 -4.98 -0.03 0.85 16 17 C 0.44 10.19 7.82 -10.99 -0.09 10.10 16 18 O -0.58 -15.62 15.78 5.55 0.09 -15.53 16 19 N -0.56 -14.10 5.29 -10.96 -0.06 -14.16 16 20 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 21 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 24 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 C -0.05 -0.49 9.80 -40.44 -0.40 -0.89 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.25 8.12 -51.93 -0.42 -0.17 16 31 H 0.07 0.32 8.13 -51.93 -0.42 -0.11 16 32 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.39 3.12 7.50 -40.82 -0.31 2.81 16 34 H 0.09 1.31 7.60 -51.93 -0.39 0.92 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 38 H 0.06 0.51 7.45 -51.93 -0.39 0.12 16 39 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 40 H 0.35 5.71 8.17 -39.29 -0.32 5.39 16 41 H 0.09 1.32 8.05 -51.93 -0.42 0.91 16 42 H 0.04 0.67 7.44 -51.93 -0.39 0.28 16 43 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 392.89 15.07 5.92 5.92 Total: -1.00 -32.82 392.89 -8.71 -41.53 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -6.61 Total: 14.42 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -0.66 Total: 2.86 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.13 Total: -55.95 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.17 Total: -23.74 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.38 Total: -1.05 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.82 -8.71 -41.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674661671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.454 kcal (2) G-P(sol) polarization free energy of solvation -32.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds