Wall clock time and date at job start Tue Mar 31 2020 22:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33816 * 122.44779 * 2 1 4 4 S 1.70622 * 110.95079 * 179.74591 * 3 2 1 5 5 C 1.75835 * 91.56388 * 0.35466 * 4 3 2 6 6 C 1.46583 * 125.45761 * 179.91676 * 5 4 3 7 7 O 1.21700 * 120.00055 * 179.69789 * 6 5 4 8 8 N 1.34780 * 120.00088 * 359.69148 * 6 5 4 9 9 C 1.46492 * 119.99930 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47696 * 325.00239 * 9 8 6 11 11 C 1.53006 * 109.47457 * 85.00142 * 9 8 6 12 12 C 1.53002 * 109.47204 * 204.99895 * 9 8 6 13 13 H 1.09002 * 109.47070 * 300.00167 * 12 9 8 14 14 C 1.52997 * 109.46817 * 59.99987 * 12 9 8 15 15 N 1.46899 * 109.47394 * 180.02562 * 12 9 8 16 16 C 1.46894 * 111.00220 * 155.00114 * 15 12 9 17 17 C 1.50694 * 109.47381 * 179.97438 * 16 15 12 18 18 O 1.21293 * 120.00187 * 359.97438 * 17 16 15 19 19 N 1.34776 * 120.00497 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00594 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99599 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00381 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99555 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00086 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47318 * 59.99945 * 24 22 20 26 26 H 1.48499 * 109.47235 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47089 * 299.99911 * 24 22 20 28 28 C 1.36645 * 109.08128 * 359.64901 * 5 4 3 29 29 H 1.08999 * 109.47260 * 269.97831 * 1 2 3 30 30 H 1.09002 * 109.46590 * 29.97989 * 1 2 3 31 31 H 1.08999 * 109.47224 * 149.97197 * 1 2 3 32 32 H 1.07998 * 124.52517 * 0.05611 * 3 2 1 33 33 H 0.96998 * 119.99716 * 0.02562 * 8 6 5 34 34 H 1.08996 * 109.47165 * 179.97438 * 11 9 8 35 35 H 1.09001 * 109.46726 * 300.00014 * 11 9 8 36 36 H 1.09002 * 109.46589 * 59.99419 * 11 9 8 37 37 H 1.08998 * 109.47533 * 179.97438 * 14 12 9 38 38 H 1.08996 * 109.47853 * 300.00202 * 14 12 9 39 39 H 1.09002 * 109.47153 * 60.00231 * 14 12 9 40 40 H 1.00900 * 110.99934 * 278.95621 * 15 12 9 41 41 H 1.08998 * 109.47346 * 299.99916 * 16 15 12 42 42 H 1.09007 * 109.47035 * 60.00148 * 16 15 12 43 43 H 0.97005 * 119.99767 * 359.97438 * 19 17 16 44 44 H 0.97002 * 119.99638 * 180.02562 * 23 22 20 45 45 H 1.08002 * 123.34839 * 180.28639 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8970 0.7892 0.0071 5 6 3.5937 -0.9428 -0.0008 6 6 4.6231 -1.9863 -0.0013 7 8 4.3002 -3.1597 -0.0015 8 7 5.9273 -1.6464 -0.0016 9 6 6.9561 -2.6893 -0.0026 10 1 6.6123 -3.5395 0.5864 11 6 7.2243 -3.1398 -1.4400 12 6 8.2453 -2.1346 0.6068 13 1 8.5891 -1.2844 0.0177 14 6 7.9771 -1.6841 2.0441 15 7 9.2771 -3.1802 0.6052 16 6 10.6230 -2.5917 0.6050 17 6 11.6525 -3.6921 0.6040 18 8 11.2998 -4.8526 0.6040 19 7 12.9652 -3.3870 0.6042 20 6 13.9019 -4.3881 0.6028 21 1 13.5877 -5.4214 0.6020 22 6 15.2553 -4.0734 0.6025 23 7 15.6374 -2.8161 0.6030 24 14 16.5314 -5.4375 0.6013 25 1 16.3579 -6.2766 -0.6116 26 1 17.8920 -4.8426 0.6005 27 1 16.3588 -6.2779 1.8134 28 6 2.2446 -1.1601 -0.0004 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3632 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5143 32 1 1.8025 2.1232 0.0009 33 1 6.1847 -0.7112 -0.0012 34 1 7.9900 -3.9155 -1.4408 35 1 6.3058 -3.5350 -1.8742 36 1 7.5681 -2.2896 -2.0291 37 1 8.8956 -1.2894 2.4785 38 1 7.2117 -0.9082 2.0450 39 1 7.6332 -2.5343 2.6332 40 1 9.1570 -3.8079 1.3860 41 1 10.7496 -1.9745 -0.2844 42 1 10.7505 -1.9762 1.4956 43 1 13.2474 -2.4589 0.6046 44 1 16.5822 -2.5964 0.6024 45 1 1.8019 -2.1452 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674661671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:41 Heat of formation + Delta-G solvation = -71.609847 kcal Electronic energy + Delta-G solvation = -26044.223370 eV Core-core repulsion = 22186.961219 eV Total energy + Delta-G solvation = -3857.262151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.12404 -40.18066 -39.19128 -38.26902 -36.05206 -35.43971 -33.27030 -32.63120 -31.36586 -30.56274 -28.68540 -27.93823 -25.89148 -25.83969 -24.00344 -21.83847 -21.71563 -21.05943 -19.97232 -19.87468 -19.42048 -17.79158 -17.49214 -16.99002 -16.71008 -16.37271 -16.25717 -16.03500 -15.65653 -15.23966 -15.13306 -14.83359 -14.72911 -14.54917 -14.27152 -14.06593 -13.96277 -13.52558 -13.39899 -13.28144 -13.08617 -12.98670 -12.89935 -12.79032 -12.71721 -12.57142 -12.41804 -12.26273 -12.11848 -11.90362 -11.69487 -11.48847 -11.23105 -10.38982 -10.27717 -9.99626 -9.83173 -9.33860 -9.29144 -8.45334 -5.93641 -0.51526 0.48415 0.91741 1.34182 1.40561 1.42580 1.53075 1.92844 2.08050 2.12187 2.31005 2.99919 3.22283 3.55389 3.58586 3.79368 4.00928 4.07193 4.18404 4.20873 4.32653 4.39410 4.45943 4.48866 4.55490 4.63166 4.69394 4.77569 4.82459 4.84777 4.88172 4.94611 5.04275 5.06269 5.20753 5.32377 5.39929 5.42282 5.46267 5.47438 5.90168 6.10883 6.34652 6.40437 6.62224 7.07272 7.14579 7.58646 8.14517 8.71656 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036417 B = 0.001741 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.691168 B =16074.237673 C =16499.550145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.131 4.131 3 C -0.227 4.227 4 S 0.246 5.754 5 C -0.297 4.297 6 C 0.589 3.411 7 O -0.574 6.574 8 N -0.704 5.704 9 C 0.161 3.839 10 H 0.067 0.933 11 C -0.146 4.146 12 C 0.085 3.915 13 H 0.104 0.896 14 C -0.180 4.180 15 N -0.672 5.672 16 C 0.069 3.931 17 C 0.437 3.563 18 O -0.624 6.624 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.274 1.274 26 H -0.270 1.270 27 H -0.273 1.273 28 C -0.060 4.060 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.197 0.803 33 H 0.409 0.591 34 H 0.067 0.933 35 H 0.038 0.962 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.049 0.951 40 H 0.345 0.655 41 H 0.109 0.891 42 H 0.071 0.929 43 H 0.397 0.603 44 H 0.277 0.723 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.759 16.889 -0.371 31.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.143 4.143 3 C -0.365 4.365 4 S 0.515 5.485 5 C -0.417 4.417 6 C 0.377 3.623 7 O -0.455 6.455 8 N -0.356 5.356 9 C 0.056 3.944 10 H 0.085 0.915 11 C -0.205 4.205 12 C -0.026 4.026 13 H 0.122 0.878 14 C -0.239 4.239 15 N -0.303 5.303 16 C -0.063 4.063 17 C 0.224 3.776 18 O -0.511 6.511 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.199 1.199 26 H -0.194 1.194 27 H -0.198 1.198 28 C -0.095 4.095 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.214 0.786 33 H 0.246 0.754 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.164 0.836 41 H 0.127 0.873 42 H 0.089 0.911 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -25.653 16.225 -1.045 30.371 hybrid contribution -0.207 -0.724 0.887 1.163 sum -25.860 15.501 -0.158 30.150 Atomic orbital electron populations 1.20572 0.87779 1.03732 1.03166 1.18967 0.99235 0.90956 1.05179 1.25579 0.98367 1.04434 1.08078 1.82749 1.04192 0.94889 1.66677 1.24534 0.97642 0.98852 1.20697 1.17257 0.82332 0.87304 0.75439 1.90820 1.82318 1.20281 1.52114 1.45729 1.04590 1.10634 1.74648 1.20714 0.86432 0.89956 0.97294 0.91474 1.21952 1.00894 1.02194 0.95412 1.21749 0.90322 0.93955 0.96565 0.87837 1.22487 1.02853 1.02230 0.96302 1.59938 1.00527 1.18313 1.51570 1.21544 0.87350 0.94017 1.03389 1.20931 0.83723 0.90782 0.82116 1.90507 1.81037 1.22941 1.56583 1.41907 1.04596 1.09377 1.65126 1.19621 0.87092 0.89745 1.50018 0.90465 1.25993 0.99250 0.99560 0.96312 1.69660 1.18088 1.17923 1.50288 0.85018 0.76953 0.77681 0.78861 1.19887 1.19437 1.19804 1.20830 0.91290 1.00567 0.96815 0.90443 0.89895 0.91308 0.78562 0.75427 0.91449 0.94249 0.91506 0.91613 0.90298 0.93157 0.83554 0.87348 0.91147 0.76902 0.91322 0.84025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 10.13 71.24 0.72 -0.02 16 2 C -0.13 -1.67 5.78 -21.05 -0.12 -1.79 16 3 C -0.23 -2.19 10.67 66.81 0.71 -1.48 16 4 S 0.25 2.67 22.16 -56.49 -1.25 1.41 16 5 C -0.30 -5.65 6.45 24.08 0.16 -5.49 16 6 C 0.59 14.45 7.75 86.42 0.67 15.12 16 7 O -0.57 -19.15 16.50 -4.35 -0.07 -19.22 16 8 N -0.70 -13.81 4.38 -446.59 -1.96 -15.76 16 9 C 0.16 3.82 2.34 45.00 0.11 3.93 16 10 H 0.07 1.97 7.58 -2.39 -0.02 1.95 16 11 C -0.15 -3.79 9.33 71.98 0.67 -3.12 16 12 C 0.08 1.80 2.22 44.92 0.10 1.90 16 13 H 0.10 1.81 7.80 -2.39 -0.02 1.79 16 14 C -0.18 -3.29 9.01 71.98 0.65 -2.64 16 15 N -0.67 -19.97 5.11 -495.59 -2.53 -22.50 16 16 C 0.07 2.21 5.96 85.56 0.51 2.72 16 17 C 0.44 20.35 7.82 87.66 0.69 21.03 16 18 O -0.62 -34.46 15.78 -3.07 -0.05 -34.51 16 19 N -0.57 -28.93 5.29 -306.99 -1.62 -30.55 16 20 C -0.34 -18.99 9.68 84.04 0.81 -18.17 16 21 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 23 N -0.92 -49.06 13.05 21.66 0.28 -48.78 16 24 Si 0.99 42.94 29.55 68.60 2.03 44.97 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 28 C -0.06 -1.10 9.80 21.72 0.21 -0.88 16 29 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.08 0.40 8.12 -2.39 -0.02 0.38 16 31 H 0.07 0.56 8.13 -2.39 -0.02 0.54 16 32 H 0.20 0.72 8.06 -2.91 -0.02 0.70 16 33 H 0.41 5.52 7.50 -92.71 -0.70 4.82 16 34 H 0.07 2.05 7.60 -2.39 -0.02 2.03 16 35 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.06 1.17 7.45 -2.39 -0.02 1.15 16 38 H 0.08 1.13 7.45 -2.39 -0.02 1.11 16 39 H 0.05 1.04 8.13 -2.39 -0.02 1.02 16 40 H 0.35 11.27 8.17 -89.69 -0.73 10.53 16 41 H 0.11 3.03 8.05 -2.39 -0.02 3.01 16 42 H 0.07 1.92 7.44 -2.38 -0.02 1.90 16 43 H 0.40 18.87 7.90 -92.70 -0.73 18.13 16 44 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 45 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -73.72 392.89 0.06 -73.66 By element: Atomic # 1 Polarization: 41.44 SS G_CDS: -1.12 Total: 40.32 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 6.35 Total: 10.96 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -5.83 Total: -117.59 kcal Atomic # 8 Polarization: -53.61 SS G_CDS: -0.12 Total: -53.73 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -1.25 Total: 1.41 kcal Total: -73.72 0.06 -73.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674661671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.052 kcal (2) G-P(sol) polarization free energy of solvation -73.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds