Wall clock time and date at job start Tue Mar 31 2020 22:15:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 C 1.41382 * 126.80211 * 2 1
4 4 C 1.35448 * 103.98992 * 179.97438 * 3 2 1
5 5 C 1.50700 * 126.78125 * 179.97438 * 4 3 2
6 6 N 1.46898 * 109.47030 * 90.00323 * 5 4 3
7 7 C 1.46900 * 110.99765 * 180.02562 * 6 5 4
8 8 H 1.08996 * 110.78204 * 38.13667 * 7 6 5
9 9 C 1.55159 * 110.72223 * 274.89596 * 7 6 5
10 10 C 1.54908 * 101.58149 * 206.13846 * 9 7 6
11 11 N 1.47417 * 104.83466 * 37.00695 * 10 9 7
12 12 C 1.34780 * 125.64832 * 155.91588 * 11 10 9
13 13 O 1.21279 * 120.00097 * 179.97438 * 12 11 10
14 14 C 1.50693 * 120.00035 * 359.95122 * 12 11 10
15 15 S 1.81004 * 109.47288 * 179.97438 * 14 12 11
16 16 C 1.76199 * 99.99818 * 179.97438 * 15 14 12
17 17 H 1.07995 * 120.00402 * 0.02562 * 16 15 14
18 18 C 1.38803 * 119.99589 * 179.97438 * 16 15 14
19 19 N 1.31629 * 120.00500 * 0.02562 * 18 16 15
20 20 Si 1.86803 * 119.99920 * 180.02562 * 18 16 15
21 21 H 1.48500 * 109.47272 * 0.02562 * 20 18 16
22 22 H 1.48498 * 109.47144 * 120.00181 * 20 18 16
23 23 H 1.48506 * 109.47076 * 240.00262 * 20 18 16
24 24 C 1.47027 * 108.70627 * 335.87259 * 11 10 9
25 25 H 1.08994 * 109.88085 * 241.64498 * 24 11 10
26 26 C 1.52999 * 110.00967 * 120.54726 * 24 11 10
27 27 O 1.34048 * 106.44330 * 0.24425 * 4 3 2
28 28 N 1.20917 * 111.56312 * 359.55998 * 27 4 3
29 29 H 1.09002 * 109.46892 * 89.99864 * 1 2 3
30 30 H 1.08999 * 109.46838 * 210.00225 * 1 2 3
31 31 H 1.08997 * 109.47355 * 330.00049 * 1 2 3
32 32 H 1.07998 * 128.00769 * 359.97075 * 3 2 1
33 33 H 1.09006 * 109.46894 * 330.00093 * 5 4 3
34 34 H 1.09002 * 109.46916 * 210.00468 * 5 4 3
35 35 H 1.00903 * 110.99774 * 303.95286 * 6 5 4
36 36 H 1.09004 * 111.00069 * 324.21067 * 9 7 6
37 37 H 1.08994 * 111.00155 * 88.02090 * 9 7 6
38 38 H 1.09000 * 110.36915 * 155.84981 * 10 9 7
39 39 H 1.09004 * 110.36393 * 278.16804 * 10 9 7
40 40 H 1.09004 * 109.47317 * 299.99765 * 14 12 11
41 41 H 1.08999 * 109.47277 * 59.99796 * 14 12 11
42 42 H 0.96997 * 120.00555 * 179.97438 * 19 18 16
43 43 H 1.09003 * 109.47102 * 295.52083 * 26 24 11
44 44 H 1.08993 * 109.47260 * 55.52384 * 26 24 11
45 45 H 1.09003 * 109.46863 * 175.52128 * 26 24 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3539 1.1321 0.0000
4 6 3.6024 0.6069 0.0006
5 6 4.9022 1.3697 0.0003
6 7 5.3242 1.6184 1.3852
7 6 6.5904 2.3622 1.4241
8 1 6.6235 3.1110 0.6328
9 6 7.7988 1.3950 1.3155
10 6 8.9087 2.2021 2.0342
11 7 8.2201 2.8840 3.1452
12 6 8.8003 3.3139 4.2832
13 8 8.1335 3.8653 5.1330
14 6 10.2774 3.1090 4.4999
15 16 10.7515 3.7901 6.1085
16 6 12.4748 3.4233 6.1002
17 1 12.9157 2.9196 5.2527
18 6 13.2661 3.7829 7.1825
19 7 12.7289 4.3973 8.2152
20 14 15.0933 3.3947 7.1734
21 1 15.4467 2.7057 5.9063
22 1 15.8680 4.6568 7.2828
23 1 15.4178 2.5134 8.3238
24 6 6.7959 3.0184 2.8057
25 1 6.5238 4.0728 2.7594
26 6 5.9385 2.3053 3.8532
27 8 3.4538 -0.7253 -0.0046
28 7 2.2869 -1.0422 0.0005
29 1 -0.3633 0.0000 -1.0277
30 1 -0.3633 -0.8900 0.5139
31 1 -0.3634 0.8899 0.5138
32 1 2.0709 2.1743 -0.0004
33 1 4.7651 2.3208 -0.5142
34 1 5.6660 0.7856 -0.5131
35 1 4.6048 2.1025 1.9010
36 1 7.5976 0.4585 1.8357
37 1 8.0605 1.2122 0.2733
38 1 9.6770 1.5313 2.4187
39 1 9.3473 2.9325 1.3543
40 1 10.5038 2.0430 4.4754
41 1 10.8341 3.6168 3.7124
42 1 13.2818 4.6482 8.9717
43 1 6.1454 1.2354 3.8249
44 1 6.1752 2.6952 4.8431
45 1 4.8839 2.4772 3.6376
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001676627572.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:15:41
Heat of formation + Delta-G solvation = 35.025351 kcal
Electronic energy + Delta-G solvation = -26287.665012 eV
Core-core repulsion = 22435.026911 eV
Total energy + Delta-G solvation = -3852.638101 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-45.26655 -40.25589 -37.94496 -35.78848 -35.09832 -32.78229 -32.42858 -31.37453
-30.55287 -29.08108 -28.48818 -26.33037 -25.49553 -24.95874 -23.39700 -23.03338
-20.56929 -20.39720 -19.05350 -17.94263 -17.82652 -17.66060 -16.65816 -16.35794
-16.04726 -15.31458 -15.08747 -14.88206 -14.80099 -14.46010 -14.06105 -13.88112
-13.76548 -13.54074 -13.41430 -13.26812 -12.96546 -12.59916 -12.53844 -12.52199
-12.39731 -11.89874 -11.68018 -11.65268 -11.49807 -11.11835 -11.06764 -11.01286
-10.83289 -10.75180 -10.39003 -9.87524 -9.80248 -9.33383 -9.07305 -9.00872
-8.51987 -8.22653 -6.49939 -6.21715 -3.92166 1.03962 1.82290 2.65512
2.87850 3.06869 3.21641 3.25717 3.31081 3.57188 3.73895 3.80399
4.01937 4.13349 4.20873 4.39520 4.57261 4.63861 4.75763 4.77852
4.96935 5.01342 5.02504 5.03738 5.08147 5.13587 5.19505 5.32728
5.33490 5.37993 5.41029 5.48798 5.55327 5.64793 5.68815 5.69588
5.87047 5.95585 6.05717 6.14397 6.34078 6.43638 6.56566 6.77754
7.59944 7.67780 7.92258 8.35526 8.57172 9.23765 10.85772
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.033014 B = 0.001812 C = 0.001773
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 847.928798 B =15447.881655 C =15792.558300
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C 0.013 3.987
3 C -0.229 4.229
4 C -0.018 4.018
5 C 0.136 3.864
6 N -0.671 5.671
7 C 0.078 3.922
8 H 0.065 0.935
9 C -0.122 4.122
10 C 0.100 3.900
11 N -0.620 5.620
12 C 0.551 3.449
13 O -0.513 6.513
14 C -0.147 4.147
15 S -0.061 6.061
16 C -0.534 4.534
17 H 0.073 0.927
18 C 0.073 3.927
19 N -0.867 5.867
20 Si 0.919 3.081
21 H -0.272 1.272
22 H -0.280 1.280
23 H -0.280 1.280
24 C 0.139 3.861
25 H 0.072 0.928
26 C -0.157 4.157
27 O 0.110 5.890
28 N -0.365 5.365
29 H 0.079 0.921
30 H 0.076 0.924
31 H 0.081 0.919
32 H 0.170 0.830
33 H 0.068 0.932
34 H 0.100 0.900
35 H 0.351 0.649
36 H 0.089 0.911
37 H 0.080 0.920
38 H 0.081 0.919
39 H 0.068 0.932
40 H 0.089 0.911
41 H 0.088 0.912
42 H 0.268 0.732
43 H 0.065 0.935
44 H 0.074 0.926
45 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.943 -6.097 -21.869 30.219
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.145 4.145
3 C -0.252 4.252
4 C -0.083 4.083
5 C 0.006 3.994
6 N -0.306 5.306
7 C -0.032 4.032
8 H 0.082 0.918
9 C -0.160 4.160
10 C -0.024 4.024
11 N -0.358 5.358
12 C 0.339 3.661
13 O -0.387 6.387
14 C -0.297 4.297
15 S 0.166 5.834
16 C -0.683 4.683
17 H 0.091 0.909
18 C -0.136 4.136
19 N -0.503 5.503
20 Si 0.745 3.255
21 H -0.196 1.196
22 H -0.206 1.206
23 H -0.206 1.206
24 C 0.035 3.965
25 H 0.090 0.910
26 C -0.215 4.215
27 O 0.043 5.957
28 N -0.068 5.068
29 H 0.098 0.902
30 H 0.095 0.905
31 H 0.100 0.900
32 H 0.188 0.812
33 H 0.086 0.914
34 H 0.118 0.882
35 H 0.172 0.828
36 H 0.108 0.892
37 H 0.099 0.901
38 H 0.100 0.900
39 H 0.086 0.914
40 H 0.107 0.893
41 H 0.106 0.894
42 H 0.078 0.922
43 H 0.085 0.915
44 H 0.093 0.907
45 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -20.796 -7.094 -20.269 29.894
hybrid contribution 1.553 0.852 -1.305 2.200
sum -19.243 -6.242 -21.575 29.576
Atomic orbital electron populations
1.20168 0.85944 1.03906 1.03342 1.23605 0.99107 0.88798 1.03035
1.22458 0.91301 1.01178 1.10232 1.24289 0.97663 0.83999 1.02308
1.20374 0.90266 0.97168 0.91564 1.60642 1.05753 1.52658 1.11540
1.22582 0.89800 0.94406 0.96454 0.91760 1.22868 0.93087 0.99035
1.01046 1.22304 0.95787 0.95681 0.88641 1.48500 1.08172 1.60746
1.18405 1.20001 0.89393 0.77222 0.79462 1.90691 1.64740 1.41252
1.42049 1.23513 0.93591 1.05269 1.07359 1.85395 1.08651 1.76309
1.13064 1.22903 0.93366 1.44897 1.07108 0.90875 1.24992 0.99411
0.94601 0.94572 1.70025 1.36154 1.37569 1.06530 0.86120 0.82949
0.78208 0.78233 1.19608 1.20578 1.20555 1.21449 0.82633 0.99106
0.93305 0.91004 1.22013 0.98082 1.01408 1.00005 1.84850 1.21403
1.22655 1.66819 1.73879 0.89395 1.24187 1.19387 0.90202 0.90499
0.89975 0.81244 0.91383 0.88212 0.82782 0.89221 0.90124 0.90031
0.91384 0.89286 0.89353 0.92238 0.91548 0.90728 0.92425
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.40 10.47 36.00 0.38 -0.02 16
2 C 0.01 0.11 7.33 -82.10 -0.60 -0.49 16
3 C -0.23 -1.55 11.06 -39.38 -0.44 -1.99 16
4 C -0.02 -0.13 7.00 -35.30 -0.25 -0.38 16
5 C 0.14 0.71 6.10 -4.98 -0.03 0.68 16
6 N -0.67 -4.53 5.51 -106.05 -0.58 -5.12 16
7 C 0.08 0.58 3.10 -65.88 -0.20 0.37 16
8 H 0.06 0.39 7.92 -51.93 -0.41 -0.02 16
9 C -0.12 -0.93 6.64 -24.58 -0.16 -1.09 16
10 C 0.10 1.00 6.69 -2.53 -0.02 0.98 16
11 N -0.62 -8.59 3.08 -163.02 -0.50 -9.09 16
12 C 0.55 10.42 7.65 -10.99 -0.08 10.34 16
13 O -0.51 -11.60 14.69 5.56 0.08 -11.52 16
14 C -0.15 -2.99 5.16 36.00 0.19 -2.80 16
15 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16
16 C -0.53 -15.21 9.50 30.94 0.29 -14.91 16
17 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16
18 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16
19 N -0.87 -26.15 13.22 55.49 0.73 -25.41 16
20 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16
21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16
22 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16
23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
24 C 0.14 1.56 3.40 -66.95 -0.23 1.34 16
25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
26 C -0.16 -1.87 8.31 37.16 0.31 -1.56 16
27 O 0.11 1.11 11.20 17.16 0.19 1.30 16
28 N -0.36 -3.95 12.07 33.42 0.40 -3.54 16
29 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16
30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16
31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16
32 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16
33 H 0.07 0.23 8.09 -51.93 -0.42 -0.19 16
34 H 0.10 0.47 8.08 -51.93 -0.42 0.05 16
35 H 0.35 2.30 6.65 -39.29 -0.26 2.03 16
36 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16
37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16
38 H 0.08 0.83 7.48 -51.93 -0.39 0.45 16
39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
40 H 0.09 1.69 7.85 -51.91 -0.41 1.28 16
41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16
42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16
43 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16
44 H 0.07 1.16 6.58 -51.93 -0.34 0.82 16
45 H 0.06 0.54 6.62 -51.93 -0.34 0.20 16
LS Contribution 385.82 15.07 5.81 5.81
Total: -1.00 -35.55 385.82 -8.80 -44.36
By element:
Atomic # 1 Polarization: 5.04 SS G_CDS: -6.76 Total: -1.73 kcal
Atomic # 6 Polarization: -6.60 SS G_CDS: -0.94 Total: -7.54 kcal
Atomic # 7 Polarization: -43.21 SS G_CDS: 0.05 Total: -43.16 kcal
Atomic # 8 Polarization: -10.49 SS G_CDS: 0.27 Total: -10.22 kcal
Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal
Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal
Total LS contribution 5.81 Total: 5.81 kcal
Total: -35.55 -8.80 -44.36 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001676627572.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.380 kcal
(2) G-P(sol) polarization free energy of solvation -35.552 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.828 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.355 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.025 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds