Wall clock time and date at job start Tue Mar 31 2020 22:15:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 C 1.41382 * 126.80211 * 2 1
4 4 C 1.35448 * 103.98992 * 179.97438 * 3 2 1
5 5 C 1.50700 * 126.78125 * 179.97438 * 4 3 2
6 6 N 1.46898 * 109.47030 * 90.00323 * 5 4 3
7 7 C 1.46900 * 110.99765 * 180.02562 * 6 5 4
8 8 H 1.08996 * 110.78204 * 38.13667 * 7 6 5
9 9 C 1.55159 * 110.72223 * 274.89596 * 7 6 5
10 10 C 1.54908 * 101.58149 * 206.13846 * 9 7 6
11 11 N 1.47417 * 104.83466 * 37.00695 * 10 9 7
12 12 C 1.34780 * 125.64832 * 155.91588 * 11 10 9
13 13 O 1.21279 * 120.00097 * 179.97438 * 12 11 10
14 14 C 1.50693 * 120.00035 * 359.95122 * 12 11 10
15 15 S 1.81004 * 109.47288 * 179.97438 * 14 12 11
16 16 C 1.76199 * 99.99818 * 179.97438 * 15 14 12
17 17 H 1.07995 * 120.00402 * 0.02562 * 16 15 14
18 18 C 1.38803 * 119.99589 * 179.97438 * 16 15 14
19 19 N 1.31629 * 120.00500 * 0.02562 * 18 16 15
20 20 Si 1.86803 * 119.99920 * 180.02562 * 18 16 15
21 21 H 1.48500 * 109.47272 * 0.02562 * 20 18 16
22 22 H 1.48498 * 109.47144 * 120.00181 * 20 18 16
23 23 H 1.48506 * 109.47076 * 240.00262 * 20 18 16
24 24 C 1.47027 * 108.70627 * 335.87259 * 11 10 9
25 25 H 1.08994 * 109.88085 * 241.64498 * 24 11 10
26 26 C 1.52999 * 110.00967 * 120.54726 * 24 11 10
27 27 O 1.34048 * 106.44330 * 0.24425 * 4 3 2
28 28 N 1.20917 * 111.56312 * 359.55998 * 27 4 3
29 29 H 1.09002 * 109.46892 * 89.99864 * 1 2 3
30 30 H 1.08999 * 109.46838 * 210.00225 * 1 2 3
31 31 H 1.08997 * 109.47355 * 330.00049 * 1 2 3
32 32 H 1.07998 * 128.00769 * 359.97075 * 3 2 1
33 33 H 1.09006 * 109.46894 * 330.00093 * 5 4 3
34 34 H 1.09002 * 109.46916 * 210.00468 * 5 4 3
35 35 H 1.00903 * 110.99774 * 303.95286 * 6 5 4
36 36 H 1.09004 * 111.00069 * 324.21067 * 9 7 6
37 37 H 1.08994 * 111.00155 * 88.02090 * 9 7 6
38 38 H 1.09000 * 110.36915 * 155.84981 * 10 9 7
39 39 H 1.09004 * 110.36393 * 278.16804 * 10 9 7
40 40 H 1.09004 * 109.47317 * 299.99765 * 14 12 11
41 41 H 1.08999 * 109.47277 * 59.99796 * 14 12 11
42 42 H 0.96997 * 120.00555 * 179.97438 * 19 18 16
43 43 H 1.09003 * 109.47102 * 295.52083 * 26 24 11
44 44 H 1.08993 * 109.47260 * 55.52384 * 26 24 11
45 45 H 1.09003 * 109.46863 * 175.52128 * 26 24 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3539 1.1321 0.0000
4 6 3.6024 0.6069 0.0006
5 6 4.9022 1.3697 0.0003
6 7 5.3242 1.6184 1.3852
7 6 6.5904 2.3622 1.4241
8 1 6.6235 3.1110 0.6328
9 6 7.7988 1.3950 1.3155
10 6 8.9087 2.2021 2.0342
11 7 8.2201 2.8840 3.1452
12 6 8.8003 3.3139 4.2832
13 8 8.1335 3.8653 5.1330
14 6 10.2774 3.1090 4.4999
15 16 10.7515 3.7901 6.1085
16 6 12.4748 3.4233 6.1002
17 1 12.9157 2.9196 5.2527
18 6 13.2661 3.7829 7.1825
19 7 12.7289 4.3973 8.2152
20 14 15.0933 3.3947 7.1734
21 1 15.4467 2.7057 5.9063
22 1 15.8680 4.6568 7.2828
23 1 15.4178 2.5134 8.3238
24 6 6.7959 3.0184 2.8057
25 1 6.5238 4.0728 2.7594
26 6 5.9385 2.3053 3.8532
27 8 3.4538 -0.7253 -0.0046
28 7 2.2869 -1.0422 0.0005
29 1 -0.3633 0.0000 -1.0277
30 1 -0.3633 -0.8900 0.5139
31 1 -0.3634 0.8899 0.5138
32 1 2.0709 2.1743 -0.0004
33 1 4.7651 2.3208 -0.5142
34 1 5.6660 0.7856 -0.5131
35 1 4.6048 2.1025 1.9010
36 1 7.5976 0.4585 1.8357
37 1 8.0605 1.2122 0.2733
38 1 9.6770 1.5313 2.4187
39 1 9.3473 2.9325 1.3543
40 1 10.5038 2.0430 4.4754
41 1 10.8341 3.6168 3.7124
42 1 13.2818 4.6482 8.9717
43 1 6.1454 1.2354 3.8249
44 1 6.1752 2.6952 4.8431
45 1 4.8839 2.4772 3.6376
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001676627572.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:15:41
Heat of formation + Delta-G solvation = 10.526383 kcal
Electronic energy + Delta-G solvation = -26288.727367 eV
Core-core repulsion = 22435.026911 eV
Total energy + Delta-G solvation = -3853.700456 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-45.86432 -41.32099 -39.07995 -36.56218 -35.65523 -34.58909 -33.60903 -32.23229
-31.58696 -29.78644 -29.54606 -27.66814 -27.01971 -25.65526 -24.04631 -23.95111
-21.29672 -21.07120 -20.28013 -19.54675 -18.57461 -18.37439 -18.00049 -17.25392
-16.89151 -16.82603 -16.38893 -16.13889 -15.79492 -15.50681 -15.02671 -14.80869
-14.52862 -14.45893 -14.18519 -14.13552 -13.90585 -13.71253 -13.50319 -13.43541
-13.15106 -13.11679 -13.07278 -12.91358 -12.70358 -12.56478 -12.33238 -12.08838
-11.80808 -11.71201 -11.61088 -11.15994 -10.92272 -10.83873 -10.45440 -10.27593
-9.69484 -9.45800 -8.67653 -8.34993 -6.13359 0.48644 1.24095 1.28768
1.41542 1.45293 1.57154 1.60027 2.06398 2.21993 2.27310 2.99259
3.16028 3.22146 3.32655 3.41168 3.56335 3.67673 3.89629 4.07447
4.10929 4.20965 4.24798 4.32251 4.35594 4.39293 4.44685 4.50992
4.59673 4.64422 4.65521 4.69555 4.71889 4.80918 4.93147 4.99005
5.04504 5.07611 5.26857 5.28738 5.34225 5.41785 5.52735 5.93217
6.19778 6.26703 6.43651 7.06308 7.16231 7.35152 8.74551
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.033014 B = 0.001812 C = 0.001773
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 847.928798 B =15447.881655 C =15792.558300
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C 0.003 3.997
3 C -0.228 4.228
4 C -0.021 4.021
5 C 0.140 3.860
6 N -0.682 5.682
7 C 0.096 3.904
8 H 0.093 0.907
9 C -0.113 4.113
10 C 0.088 3.912
11 N -0.612 5.612
12 C 0.547 3.453
13 O -0.563 6.563
14 C -0.120 4.120
15 S -0.151 6.151
16 C -0.545 4.545
17 H 0.083 0.917
18 C 0.013 3.987
19 N -0.911 5.911
20 Si 0.999 3.001
21 H -0.256 1.256
22 H -0.273 1.273
23 H -0.274 1.274
24 C 0.132 3.868
25 H 0.069 0.931
26 C -0.148 4.148
27 O 0.085 5.915
28 N -0.405 5.405
29 H 0.092 0.908
30 H 0.070 0.930
31 H 0.101 0.899
32 H 0.198 0.802
33 H 0.097 0.903
34 H 0.109 0.891
35 H 0.352 0.648
36 H 0.076 0.924
37 H 0.115 0.885
38 H 0.079 0.921
39 H 0.090 0.910
40 H 0.103 0.897
41 H 0.106 0.894
42 H 0.271 0.729
43 H 0.059 0.941
44 H 0.031 0.969
45 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.646 -6.309 -25.155 32.536
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.155 4.155
3 C -0.249 4.249
4 C -0.085 4.085
5 C 0.011 3.989
6 N -0.317 5.317
7 C -0.014 4.014
8 H 0.111 0.889
9 C -0.151 4.151
10 C -0.034 4.034
11 N -0.347 5.347
12 C 0.335 3.665
13 O -0.441 6.441
14 C -0.271 4.271
15 S 0.076 5.924
16 C -0.693 4.693
17 H 0.101 0.899
18 C -0.191 4.191
19 N -0.548 5.548
20 Si 0.821 3.179
21 H -0.180 1.180
22 H -0.198 1.198
23 H -0.200 1.200
24 C 0.028 3.972
25 H 0.087 0.913
26 C -0.206 4.206
27 O 0.021 5.979
28 N -0.113 5.113
29 H 0.110 0.890
30 H 0.089 0.911
31 H 0.120 0.880
32 H 0.215 0.785
33 H 0.115 0.885
34 H 0.127 0.873
35 H 0.174 0.826
36 H 0.094 0.906
37 H 0.133 0.867
38 H 0.098 0.902
39 H 0.108 0.892
40 H 0.121 0.879
41 H 0.125 0.875
42 H 0.080 0.920
43 H 0.078 0.922
44 H 0.050 0.950
45 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -20.499 -7.331 -23.622 32.124
hybrid contribution 1.318 0.896 -0.380 1.639
sum -19.181 -6.435 -24.002 31.391
Atomic orbital electron populations
1.20304 0.84211 1.04583 1.04328 1.24228 1.00478 0.88980 1.01824
1.22837 0.90693 1.02042 1.09370 1.24775 0.98926 0.83186 1.01641
1.20509 0.89449 0.98185 0.90726 1.60571 1.05562 1.52736 1.12860
1.22459 0.90123 0.94641 0.94201 0.88931 1.22862 0.91971 0.97834
1.02425 1.22689 0.96639 0.96333 0.87754 1.48446 1.09845 1.58955
1.17472 1.19713 0.88650 0.77543 0.80608 1.90673 1.65357 1.43868
1.44199 1.23310 0.95218 1.05527 1.03059 1.85573 1.09780 1.77808
1.19216 1.23230 0.93405 1.45002 1.07691 0.89920 1.26135 1.05005
0.94077 0.93906 1.70188 1.38333 1.38839 1.07441 0.84898 0.75868
0.78252 0.78880 1.17951 1.19850 1.19971 1.21698 0.80636 0.99432
0.95440 0.91314 1.21902 1.00002 1.00653 0.98087 1.84794 1.21312
1.24194 1.67601 1.73878 0.90023 1.25790 1.21594 0.88984 0.91103
0.88008 0.78496 0.88532 0.87316 0.82625 0.90572 0.86687 0.90237
0.89154 0.87879 0.87540 0.91982 0.92192 0.95018 0.89796
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.69 10.47 71.23 0.75 0.05 16
2 C 0.00 0.05 7.33 43.58 0.32 0.37 16
3 C -0.23 -2.52 11.06 22.40 0.25 -2.27 16
4 C -0.02 -0.26 7.00 25.04 0.18 -0.09 16
5 C 0.14 0.93 6.10 85.56 0.52 1.45 16
6 N -0.68 -7.00 5.51 -489.44 -2.70 -9.69 16
7 C 0.10 1.07 3.10 46.11 0.14 1.21 16
8 H 0.09 0.62 7.92 -2.39 -0.02 0.60 16
9 C -0.11 -1.29 6.64 31.99 0.21 -1.08 16
10 C 0.09 1.51 6.69 86.86 0.58 2.09 16
11 N -0.61 -16.25 3.08 -788.07 -2.43 -18.68 16
12 C 0.55 20.99 7.65 87.65 0.67 21.66 16
13 O -0.56 -26.66 14.69 -3.03 -0.04 -26.71 16
14 C -0.12 -4.90 5.16 71.23 0.37 -4.53 16
15 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16
16 C -0.55 -31.37 9.50 67.96 0.65 -30.73 16
17 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16
18 C 0.01 0.77 5.49 84.86 0.47 1.24 16
19 N -0.91 -56.30 13.22 21.65 0.29 -56.01 16
20 Si 1.00 43.69 29.55 68.60 2.03 45.72 16
21 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16
22 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16
23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16
24 C 0.13 2.74 3.40 45.34 0.15 2.90 16
25 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16
26 C -0.15 -3.51 8.31 71.98 0.60 -2.92 16
27 O 0.08 1.66 11.20 71.57 0.80 2.46 16
28 N -0.41 -8.68 12.07 -49.55 -0.60 -9.28 16
29 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16
30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16
31 H 0.10 0.48 8.14 -2.39 -0.02 0.47 16
32 H 0.20 0.89 8.06 -2.91 -0.02 0.87 16
33 H 0.10 0.16 8.09 -2.38 -0.02 0.14 16
34 H 0.11 0.57 8.08 -2.39 -0.02 0.55 16
35 H 0.35 3.55 6.65 -89.69 -0.60 2.95 16
36 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16
37 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16
38 H 0.08 1.43 7.48 -2.39 -0.02 1.41 16
39 H 0.09 1.23 8.14 -2.38 -0.02 1.22 16
40 H 0.10 3.88 7.85 -2.39 -0.02 3.86 16
41 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16
42 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16
43 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16
44 H 0.03 1.03 6.58 -2.39 -0.02 1.01 16
45 H 0.08 1.49 6.62 -2.39 -0.02 1.47 16
Total: -1.00 -82.95 385.82 2.44 -80.52
By element:
Atomic # 1 Polarization: 11.58 SS G_CDS: 0.41 Total: 11.99 kcal
Atomic # 6 Polarization: -16.49 SS G_CDS: 5.85 Total: -10.64 kcal
Atomic # 7 Polarization: -88.22 SS G_CDS: -5.44 Total: -93.66 kcal
Atomic # 8 Polarization: -25.00 SS G_CDS: 0.76 Total: -24.25 kcal
Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal
Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal
Total: -82.95 2.44 -80.52 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001676627572.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 91.043 kcal
(2) G-P(sol) polarization free energy of solvation -82.954 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.089 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.517 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.526 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds