Wall clock time and date at job start Tue Mar 31 2020 22:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35451 * 126.77433 * 2 1 4 4 C 1.41381 * 103.98389 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.80264 * 180.02562 * 4 3 2 6 6 N 1.46904 * 109.47221 * 94.99821 * 5 4 3 7 7 C 1.46901 * 111.00043 * 180.02562 * 6 5 4 8 8 H 1.08997 * 110.77763 * 31.75771 * 7 6 5 9 9 C 1.55154 * 110.72208 * 154.99628 * 7 6 5 10 10 C 1.54908 * 101.58289 * 153.86260 * 9 7 6 11 11 H 1.09002 * 110.36632 * 81.83114 * 10 9 7 12 12 C 1.53000 * 110.36604 * 204.04410 * 10 9 7 13 13 N 1.47425 * 104.92961 * 322.93718 * 10 9 7 14 14 C 1.34774 * 125.65138 * 204.15299 * 13 10 9 15 15 O 1.21284 * 119.99787 * 0.02562 * 14 13 10 16 16 C 1.50700 * 120.00339 * 179.97438 * 14 13 10 17 17 S 1.81001 * 109.47158 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99837 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00340 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00216 * 180.02562 * 18 17 16 21 21 N 1.31635 * 119.99790 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00322 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46951 * 59.99968 * 22 20 18 24 24 H 1.48498 * 109.47061 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.46905 * 299.99940 * 22 20 18 26 26 C 1.47290 * 108.55742 * 24.15407 * 13 10 9 27 27 N 1.30179 * 106.39436 * 0.25456 * 4 3 2 28 28 O 1.20920 * 111.60518 * 359.54430 * 27 4 3 29 29 H 1.09006 * 109.46961 * 90.00432 * 1 2 3 30 30 H 1.08994 * 109.47268 * 210.00282 * 1 2 3 31 31 H 1.08998 * 109.46921 * 330.00363 * 1 2 3 32 32 H 1.08001 * 128.00938 * 0.02562 * 3 2 1 33 33 H 1.08996 * 109.47445 * 334.99668 * 5 4 3 34 34 H 1.08998 * 109.47082 * 214.99058 * 5 4 3 35 35 H 1.00893 * 111.00284 * 56.04357 * 6 5 4 36 36 H 1.09008 * 111.00345 * 35.78730 * 9 7 6 37 37 H 1.09000 * 111.03743 * 271.95697 * 9 7 6 38 38 H 1.09000 * 109.47320 * 58.46943 * 12 10 9 39 39 H 1.09008 * 109.46775 * 178.46314 * 12 10 9 40 40 H 1.08999 * 109.47379 * 298.46262 * 12 10 9 41 41 H 1.09001 * 109.47139 * 300.00399 * 16 14 13 42 42 H 1.09007 * 109.46778 * 60.00102 * 16 14 13 43 43 H 0.97001 * 119.99663 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.85762 * 239.50064 * 26 13 10 45 45 H 1.08995 * 110.00297 * 118.43011 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5373 0.0006 5 6 4.9210 1.3000 0.0014 6 7 5.4037 1.4436 1.3814 7 6 6.6716 2.1845 1.4213 8 1 6.7168 2.9172 0.6156 9 6 6.8631 2.8713 2.7993 10 6 8.4066 2.9699 2.8859 11 1 8.7631 3.8369 2.3299 12 6 8.8536 3.0547 4.3467 13 7 8.9018 1.7257 2.2693 14 6 10.0972 1.1515 2.5099 15 8 10.8687 1.6627 3.2937 16 6 10.4746 -0.1264 1.8060 17 16 12.1263 -0.6425 2.3367 18 6 12.3069 -2.1151 1.3863 19 1 11.5123 -2.4338 0.7278 20 6 13.4698 -2.8663 1.4845 21 7 14.4381 -2.4783 2.2874 22 14 13.6610 -4.4279 0.4774 23 1 13.5671 -4.0995 -0.9678 24 1 14.9838 -5.0406 0.7603 25 1 12.5844 -5.3847 0.8386 26 6 7.8718 1.2171 1.3475 27 7 3.4763 -0.7564 -0.0046 28 8 2.3095 -1.0736 0.0007 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 2.0345 2.1271 0.0004 33 1 4.7633 2.2872 -0.4329 34 1 5.6608 0.7579 -0.5876 35 1 5.4964 0.5435 1.8276 36 1 6.4654 2.2517 3.6032 37 1 6.4071 3.8612 2.8098 38 1 8.5007 2.1759 4.8863 39 1 9.9419 3.0960 4.3918 40 1 8.4367 3.9527 4.8027 41 1 9.7535 -0.9050 2.0549 42 1 10.4738 0.0384 0.7284 43 1 15.2507 -3.0035 2.3563 44 1 7.5618 0.2178 1.6536 45 1 8.2628 1.1884 0.3305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676709004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:14 Heat of formation + Delta-G solvation = 30.935826 kcal Electronic energy + Delta-G solvation = -26294.631679 eV Core-core repulsion = 22441.816242 eV Total energy + Delta-G solvation = -3852.815437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.25472 -40.16377 -37.89267 -36.01871 -34.16539 -33.40589 -32.42445 -32.17691 -29.99732 -28.66354 -28.21141 -26.20453 -25.67922 -25.43909 -23.38255 -22.24529 -21.20897 -20.36586 -18.97025 -17.98223 -17.64841 -17.59759 -16.95653 -16.26771 -15.76311 -15.12013 -15.08577 -14.90888 -14.79744 -14.24790 -14.19361 -13.76742 -13.73551 -13.57206 -13.30898 -13.08527 -12.86030 -12.78480 -12.68043 -12.59103 -12.15750 -12.10433 -11.82206 -11.63159 -11.40088 -11.13895 -11.03626 -11.02474 -10.91393 -10.76091 -10.52311 -9.81798 -9.68755 -9.24222 -9.05445 -8.87826 -8.48513 -8.23989 -6.49832 -6.21108 -3.91788 1.11893 1.82829 2.75178 2.88447 3.06614 3.24009 3.25632 3.29325 3.54530 3.68721 3.92922 4.05414 4.20760 4.31706 4.36969 4.60927 4.70649 4.77979 4.85231 4.90073 4.99621 5.03838 5.07539 5.13666 5.13826 5.18547 5.28695 5.36512 5.43764 5.45904 5.50807 5.63386 5.67733 5.68208 5.74243 5.82273 5.89286 6.13139 6.17185 6.33718 6.50437 6.67218 6.82741 7.59611 7.68641 7.93712 8.35459 8.58490 9.24019 10.86234 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010454 B = 0.002461 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.790158 B =11373.067761 C =13769.545762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.037 4.037 3 C -0.218 4.218 4 C 0.021 3.979 5 C 0.135 3.865 6 N -0.670 5.670 7 C 0.077 3.923 8 H 0.097 0.903 9 C -0.114 4.114 10 C 0.134 3.866 11 H 0.073 0.927 12 C -0.164 4.164 13 N -0.621 5.621 14 C 0.551 3.449 15 O -0.510 6.510 16 C -0.148 4.148 17 S -0.058 6.058 18 C -0.536 4.536 19 H 0.071 0.929 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.274 1.274 26 C 0.076 3.924 27 N -0.359 5.359 28 O 0.101 5.899 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.171 0.829 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.350 0.650 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.269 0.731 44 H 0.067 0.933 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.382 11.321 -5.002 31.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.100 4.100 3 C -0.240 4.240 4 C -0.138 4.138 5 C 0.005 3.995 6 N -0.302 5.302 7 C -0.033 4.033 8 H 0.115 0.885 9 C -0.153 4.153 10 C 0.031 3.969 11 H 0.091 0.909 12 C -0.221 4.221 13 N -0.359 5.359 14 C 0.339 3.661 15 O -0.384 6.384 16 C -0.299 4.299 17 S 0.168 5.832 18 C -0.684 4.684 19 H 0.089 0.911 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.050 4.050 27 N -0.063 5.063 28 O 0.033 5.967 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.189 0.811 33 H 0.116 0.884 34 H 0.072 0.928 35 H 0.170 0.830 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -27.489 11.516 -3.635 30.025 hybrid contribution -0.567 -1.604 -2.025 2.645 sum -28.056 9.912 -5.660 30.289 Atomic orbital electron populations 1.20338 0.84024 1.04724 1.04080 1.24535 0.96444 0.86206 1.02849 1.22375 0.91147 1.00954 1.09546 1.23401 0.97313 0.89844 1.03211 1.20267 0.89559 0.98891 0.90735 1.60613 1.28649 1.25148 1.15790 1.22657 0.85916 0.95369 0.99383 0.88464 1.22874 0.94255 1.01577 0.96582 1.21880 0.92651 0.87188 0.95199 0.90942 1.22150 1.04843 1.01281 0.93862 1.48552 1.16385 1.26118 1.44860 1.19968 0.79161 0.85231 0.81706 1.90650 1.49108 1.63705 1.34965 1.23528 1.06857 0.96523 1.02947 1.85356 1.09261 1.29998 1.58550 1.22816 1.05634 1.10208 1.29742 0.91069 1.24988 0.94786 0.98178 0.95599 1.70010 1.06196 1.38592 1.35464 0.86228 0.77572 0.81691 0.80048 1.19950 1.20765 1.19924 1.22798 0.89671 0.98075 0.94435 1.73895 0.97055 1.16402 1.18931 1.84837 1.11252 1.33228 1.67341 0.89433 0.89793 0.89008 0.81149 0.88416 0.92782 0.83032 0.90017 0.89631 0.92641 0.89233 0.92381 0.89547 0.89533 0.92125 0.91448 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.21 10.45 36.01 0.38 0.17 16 2 C -0.04 -0.26 7.49 -35.30 -0.26 -0.52 16 3 C -0.22 -1.57 11.06 -39.38 -0.44 -2.01 16 4 C 0.02 0.20 6.84 -82.10 -0.56 -0.36 16 5 C 0.13 1.05 6.14 -4.97 -0.03 1.02 16 6 N -0.67 -5.59 6.37 -106.06 -0.68 -6.27 16 7 C 0.08 0.65 3.28 -65.88 -0.22 0.44 16 8 H 0.10 0.70 7.83 -51.93 -0.41 0.29 16 9 C -0.11 -1.02 6.19 -24.58 -0.15 -1.17 16 10 C 0.13 1.62 3.76 -66.42 -0.25 1.37 16 11 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 12 C -0.16 -2.16 8.65 37.16 0.32 -1.84 16 13 N -0.62 -9.11 3.25 -162.83 -0.53 -9.64 16 14 C 0.55 10.79 7.65 -10.99 -0.08 10.70 16 15 O -0.51 -11.65 13.54 5.55 0.08 -11.57 16 16 C -0.15 -3.14 5.36 36.01 0.19 -2.94 16 17 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 18 C -0.54 -15.56 9.50 30.94 0.29 -15.26 16 19 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 20 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 21 N -0.87 -26.46 13.22 55.49 0.73 -25.73 16 22 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 C 0.08 0.86 6.23 -2.92 -0.02 0.84 16 27 N -0.36 -4.09 12.07 33.42 0.40 -3.68 16 28 O 0.10 1.01 11.20 17.18 0.19 1.20 16 29 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.10 0.58 8.08 -51.93 -0.42 0.16 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.35 3.30 8.04 -39.30 -0.32 2.99 16 36 H 0.08 0.79 8.06 -51.92 -0.42 0.37 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.48 5.99 -51.92 -0.31 1.17 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 42 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 43 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.07 0.78 7.49 -51.93 -0.39 0.39 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 388.40 15.07 5.85 5.85 Total: -1.00 -35.59 388.40 -8.98 -44.58 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.88 Total: -0.13 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -0.92 Total: -7.54 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.07 Total: -45.32 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.27 Total: -10.37 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.59 -8.98 -44.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676709004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.511 kcal (2) G-P(sol) polarization free energy of solvation -35.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds