Wall clock time and date at job start Tue Mar 31 2020 22:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34484 * 126.83637 * 2 1 4 4 N 1.36441 * 108.86107 * 180.24886 * 3 2 1 5 5 H 0.97007 * 124.85733 * 179.72435 * 4 3 2 6 6 C 1.34657 * 110.29503 * 359.75214 * 4 3 2 7 7 C 1.36769 * 108.39803 * 359.97438 * 6 4 3 8 8 C 1.47267 * 126.94283 * 179.97438 * 7 6 4 9 9 O 1.21627 * 119.99776 * 180.02562 * 8 7 6 10 10 N 1.34773 * 119.99933 * 0.02871 * 8 7 6 11 11 C 1.46501 * 119.99786 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47084 * 180.02562 * 11 10 8 13 13 H 1.08996 * 109.46884 * 295.00891 * 12 11 10 14 14 C 1.52997 * 109.47127 * 175.00139 * 12 11 10 15 15 N 1.46497 * 109.46631 * 55.00356 * 12 11 10 16 16 C 1.46505 * 120.00341 * 60.00014 * 15 12 11 17 17 C 1.34779 * 119.99848 * 239.99844 * 15 12 11 18 18 O 1.21282 * 120.00232 * 0.02562 * 17 15 12 19 19 C 1.50702 * 120.00153 * 180.02562 * 17 15 12 20 20 S 1.80995 * 109.47490 * 180.02562 * 19 17 15 21 21 C 1.76192 * 100.00289 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00046 * 0.02562 * 21 20 19 23 23 C 1.38801 * 120.00483 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99429 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00566 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46656 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47329 * 119.99977 * 25 23 21 28 28 H 1.48498 * 109.47064 * 240.00141 * 25 23 21 29 29 H 1.08996 * 109.47118 * 270.15386 * 1 2 3 30 30 H 1.09001 * 109.47126 * 30.15020 * 1 2 3 31 31 H 1.09000 * 109.47242 * 150.14496 * 1 2 3 32 32 H 1.08008 * 125.56926 * 0.03744 * 3 2 1 33 33 H 1.08001 * 125.80117 * 180.02562 * 6 4 3 34 34 H 0.96999 * 120.00431 * 0.02562 * 10 8 7 35 35 H 1.08995 * 109.46848 * 60.00720 * 11 10 8 36 36 H 1.09001 * 109.47209 * 300.00353 * 11 10 8 37 37 H 1.09002 * 109.47153 * 180.02562 * 14 12 11 38 38 H 1.09001 * 109.46832 * 60.00321 * 14 12 11 39 39 H 1.09004 * 109.47261 * 300.00303 * 14 12 11 40 40 H 1.09005 * 109.46851 * 89.99998 * 16 15 12 41 41 H 1.08997 * 109.47129 * 209.99273 * 16 15 12 42 42 H 1.08993 * 109.46804 * 329.99912 * 16 15 12 43 43 H 1.09009 * 109.47061 * 300.00107 * 19 17 15 44 44 H 1.08996 * 109.47578 * 59.99511 * 19 17 15 45 45 H 0.97002 * 120.00046 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6553 -0.0056 5 1 4.3841 1.2413 -0.0106 6 6 3.6656 -0.6902 -0.0038 7 6 2.3864 -1.1740 0.0036 8 6 1.9749 -2.5880 0.0074 9 8 0.7936 -2.8776 0.0137 10 7 2.9073 -3.5612 0.0040 11 6 2.4980 -4.9678 0.0084 12 6 3.7405 -5.8606 0.0039 13 1 4.2846 -5.7213 -0.9303 14 6 3.3169 -7.3250 0.1341 15 7 4.6047 -5.5002 1.1306 16 6 4.1006 -5.6022 2.5024 17 6 5.8636 -5.0749 0.9052 18 8 6.2809 -4.9901 -0.2304 19 6 6.7528 -4.7047 2.0642 20 16 8.3677 -4.1760 1.4410 21 6 9.1790 -3.8130 2.9623 22 1 8.6563 -3.9457 3.8981 23 6 10.4902 -3.3577 2.9584 24 7 11.1274 -3.1965 1.8178 25 14 11.3506 -2.9735 4.5713 26 1 10.4234 -3.2353 5.7014 27 1 12.5534 -3.8335 4.7078 28 1 11.7585 -1.5458 4.5869 29 1 -0.3633 0.0028 1.0276 30 1 -0.3633 0.8886 -0.5162 31 1 -0.3634 -0.8913 -0.5116 32 1 1.9868 2.1059 0.0006 33 1 4.5664 -1.2860 -0.0069 34 1 3.8494 -3.3303 -0.0005 35 1 1.8985 -5.1745 -0.8782 36 1 1.9077 -5.1717 0.9018 37 1 4.2021 -7.9610 0.1313 38 1 2.6738 -7.5930 -0.7042 39 1 2.7728 -7.4642 1.0683 40 1 4.3124 -6.5970 2.8943 41 1 4.5902 -4.8543 3.1260 42 1 3.0241 -5.4313 2.5075 43 1 6.2964 -3.8901 2.6267 44 1 6.8797 -5.5694 2.7156 45 1 12.0438 -2.8787 1.8150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001678173207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:21 Heat of formation + Delta-G solvation = -55.466686 kcal Electronic energy + Delta-G solvation = -27129.595878 eV Core-core repulsion = 23273.033747 eV Total energy + Delta-G solvation = -3856.562131 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.11715 -41.18726 -39.93718 -37.63632 -35.26908 -34.57450 -33.33346 -33.21476 -30.91230 -30.13345 -27.83529 -27.64326 -27.43071 -27.21412 -23.77847 -22.77562 -20.89901 -20.62178 -19.99489 -19.55847 -19.19471 -18.30527 -17.40641 -17.20934 -16.87399 -16.77780 -16.42057 -16.24290 -15.83535 -15.13479 -14.97845 -14.65525 -14.58108 -14.46554 -14.39982 -14.11458 -13.83627 -13.71164 -13.56489 -13.43639 -13.28126 -13.26727 -13.13773 -13.01908 -12.92534 -12.77805 -12.57541 -12.32471 -11.96268 -11.68401 -11.15271 -10.93131 -10.85865 -10.24197 -10.14952 -9.73095 -9.55815 -9.19632 -8.64204 -8.34357 -6.10907 0.74555 1.26553 1.40631 1.46169 1.49745 1.56372 1.57378 2.04699 2.25441 2.28345 2.46845 2.56191 3.00143 3.27466 3.59028 3.80416 3.96515 4.04037 4.09395 4.16866 4.25291 4.28635 4.29479 4.43437 4.50655 4.59481 4.65185 4.69282 4.76176 4.80521 4.87423 4.93671 4.95085 5.05014 5.16670 5.25176 5.33346 5.43330 5.44362 5.59357 5.83155 5.95881 6.20533 6.25529 6.53731 6.64842 7.07967 7.13569 7.30284 8.74550 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009932 B = 0.003291 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.622810 B = 8507.038280 C =10578.587948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.146 4.146 3 C -0.010 4.010 4 N -0.535 5.535 5 H 0.435 0.565 6 C 0.056 3.944 7 C -0.266 4.266 8 C 0.587 3.413 9 O -0.582 6.582 10 N -0.722 5.722 11 C 0.118 3.882 12 C 0.127 3.873 13 H 0.087 0.913 14 C -0.150 4.150 15 N -0.602 5.602 16 C 0.071 3.929 17 C 0.534 3.466 18 O -0.559 6.559 19 C -0.126 4.126 20 S -0.141 6.141 21 C -0.545 4.545 22 H 0.080 0.920 23 C 0.017 3.983 24 N -0.909 5.909 25 Si 0.993 3.007 26 H -0.258 1.258 27 H -0.276 1.276 28 H -0.274 1.274 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.204 0.796 33 H 0.177 0.823 34 H 0.400 0.600 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.103 0.897 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.705 2.805 0.107 19.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.152 4.152 3 C -0.138 4.138 4 N -0.130 5.130 5 H 0.275 0.725 6 C -0.082 4.082 7 C -0.277 4.277 8 C 0.378 3.622 9 O -0.463 6.463 10 N -0.372 5.372 11 C -0.007 4.007 12 C 0.023 3.977 13 H 0.105 0.895 14 C -0.208 4.208 15 N -0.337 5.337 16 C -0.071 4.071 17 C 0.322 3.678 18 O -0.437 6.437 19 C -0.277 4.277 20 S 0.086 5.914 21 C -0.692 4.692 22 H 0.098 0.902 23 C -0.188 4.188 24 N -0.546 5.546 25 Si 0.816 3.184 26 H -0.182 1.182 27 H -0.202 1.202 28 H -0.199 1.199 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.221 0.779 33 H 0.194 0.806 34 H 0.235 0.765 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.125 0.875 44 H 0.121 0.879 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.704 2.854 -1.637 19.977 hybrid contribution 1.281 0.293 1.917 2.324 sum -18.423 3.147 0.280 18.692 Atomic orbital electron populations 1.20097 0.89125 1.02282 1.01709 1.20823 0.96233 0.90819 1.07370 1.22084 0.81977 1.00155 1.09581 1.41605 1.09165 1.06266 1.55968 0.72538 1.22112 0.98221 0.85031 1.02859 1.20477 0.93945 0.92602 1.20645 1.17649 0.84884 0.84879 0.74803 1.90687 1.18310 1.84423 1.52916 1.45811 1.09658 1.06242 1.75538 1.21746 0.96164 0.79436 1.03323 1.21378 0.89915 0.95881 0.90499 0.89494 1.22005 1.02226 0.92229 1.04328 1.47889 1.11460 1.65690 1.08622 1.22013 1.01213 1.03233 0.80670 1.20089 0.82142 0.76153 0.89421 1.90696 1.74106 1.54181 1.24703 1.23395 0.98920 1.05235 1.00181 1.85494 1.06604 1.85690 1.13563 1.23218 1.01398 1.51359 0.93273 0.90188 1.26037 0.97108 0.94474 1.01224 1.70176 1.12316 1.44396 1.27703 0.84978 0.77992 0.78008 0.77449 1.18186 1.20161 1.19926 0.92073 0.90126 0.92982 0.77901 0.80614 0.76531 0.90123 0.90270 0.92463 0.89432 0.90265 0.90711 0.90688 0.89337 0.87488 0.87895 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.60 9.97 71.24 0.71 -0.89 16 2 C -0.15 -3.43 6.35 -18.52 -0.12 -3.54 16 3 C -0.01 -0.17 11.82 83.12 0.98 0.82 16 4 N -0.54 -8.84 5.90 -194.56 -1.15 -9.99 16 5 H 0.43 4.50 8.96 -92.70 -0.83 3.67 16 6 C 0.06 1.24 11.40 83.92 0.96 2.20 16 7 C -0.27 -7.04 6.29 -19.04 -0.12 -7.16 16 8 C 0.59 17.10 7.81 86.62 0.68 17.78 16 9 O -0.58 -19.87 15.32 -4.12 -0.06 -19.93 16 10 N -0.72 -18.01 5.38 -466.52 -2.51 -20.52 16 11 C 0.12 2.46 4.92 86.38 0.42 2.88 16 12 C 0.13 2.68 2.80 44.99 0.13 2.81 16 13 H 0.09 2.29 6.90 -2.39 -0.02 2.28 16 14 C -0.15 -2.32 9.19 71.98 0.66 -1.66 16 15 N -0.60 -14.36 2.24 -822.58 -1.85 -16.20 16 16 C 0.07 1.23 9.30 127.77 1.19 2.42 16 17 C 0.53 18.06 7.40 87.66 0.65 18.71 16 18 O -0.56 -23.45 15.19 -3.04 -0.05 -23.49 16 19 C -0.13 -4.68 4.71 71.24 0.34 -4.34 16 20 S -0.14 -7.36 20.57 -56.49 -1.16 -8.53 16 21 C -0.54 -29.82 9.50 67.95 0.65 -29.17 16 22 H 0.08 4.10 7.80 -2.91 -0.02 4.08 16 23 C 0.02 0.91 5.49 84.86 0.47 1.37 16 24 N -0.91 -53.92 13.22 21.65 0.29 -53.63 16 25 Si 0.99 42.21 29.55 68.60 2.03 44.24 16 26 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 27 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.37 6.86 -2.39 -0.02 1.35 16 32 H 0.20 1.83 8.06 -2.91 -0.02 1.80 16 33 H 0.18 3.66 7.45 -2.91 -0.02 3.63 16 34 H 0.40 10.29 6.81 -92.71 -0.63 9.66 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 1.54 6.88 -2.39 -0.02 1.52 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 0.97 7.67 -2.38 -0.02 0.95 16 40 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.07 1.35 6.44 -2.39 -0.02 1.33 16 42 H 0.09 1.27 6.53 -2.39 -0.02 1.25 16 43 H 0.11 3.57 7.40 -2.39 -0.02 3.55 16 44 H 0.10 3.54 8.11 -2.40 -0.02 3.52 16 45 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -79.45 388.70 2.69 -76.76 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: -0.43 Total: 29.08 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 7.58 Total: 2.22 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -5.22 Total: -100.35 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -0.11 Total: -43.42 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: -7.36 SS G_CDS: -1.16 Total: -8.53 kcal Total: -79.45 2.69 -76.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678173207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.290 kcal (2) G-P(sol) polarization free energy of solvation -79.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds